#!/usr/bin/env bash

# parse command line arguments
for i in "$@"; do
case $i in
  -h|--help)
    echo $helptext
    exit 0
  ;;
esac
done

# make sure FREESURFER_HOME is set
if [[ -z "$FREESURFER_HOME" ]]; then
  echo "error: FREESURFER_HOME must be set"
  exit 1
fi

# get any course-specific freesurfer patches 
rsync -rtv rsync://surfer.nmr.mgh.harvard.edu/pub/data/course_data/freesurfer-patch/$(uname)/ $FREESURFER_HOME

# get the course-laptop bashrc file
rsync -tv rsync://surfer.nmr.mgh.harvard.edu/pub/data/course_data/bashrc ~/.bashrc

# get the tutorial scripts
rsync -tv rsync://surfer.nmr.mgh.harvard.edu/pub/data/course_data/fs_tutorial_data $FREESURFER_HOME/bin/
rsync -tv rsync://surfer.nmr.mgh.harvard.edu/pub/data/course_data/fs_run_tutorials $FREESURFER_HOME/bin/

# finally, update this script (make sure this command is run last just to be safe)
rsync -tv rsync://surfer.nmr.mgh.harvard.edu/pub/data/course_data/fs_update $FREESURFER_HOME/bin/