register-sess log file
$Id: register-sess,v 1.19 2015/12/10 22:51:30 zkaufman Exp $
Sun Sep 30 01:10:19 EDT 2018

setenv SUBJECTS_DIR /media/sda1/nmrclass/tutorial_data/fsfast-tutorial.subjects
cd /media/sda1/nmrclass/tutorial_data/fsfast-functional
/media/sda1/nmrclass/freesurfer/fsfast/bin/register-sess -s sess01 -d /media/sda1/nmrclass/tutorial_data/fsfast-functional -fsd bold -delete-dat -dof 6 -bold -per-run -update -init-coreg

freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-tutorial-2beb96c
Linux fsuser3-G5-5587 4.15.0-34-generic #37-Ubuntu SMP Mon Aug 27 15:21:48 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux
 
Session: /media/sda1/nmrclass/tutorial_data/fsfast-functional/sess01 ----------------
Sun Sep 30 01:10:19 EDT 2018
--------------------------------------
/media/sda1/nmrclass/tutorial_data/fsfast-functional/sess01
bbregister --s fsf01anat --init-coreg --6 --bold --mov bold/template.nii.gz --reg bold/register.dof6.dat --lta bold/register.dof6.lta --init-reg-out bold/init.register.dof6.dat
tmp bold/tmp.bbregister.27741
Log file is bold/register.dof6.dat.log
Sun Sep 30 01:10:19 EDT 2018

setenv SUBJECTS_DIR /media/sda1/nmrclass/tutorial_data/fsfast-tutorial.subjects
cd /media/sda1/nmrclass/tutorial_data/fsfast-functional/sess01
/media/sda1/nmrclass/freesurfer/bin/bbregister --s fsf01anat --init-coreg --6 --bold --mov bold/template.nii.gz --reg bold/register.dof6.dat --lta bold/register.dof6.lta --init-reg-out bold/init.register.dof6.dat

$Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $
Linux fsuser3-G5-5587 4.15.0-34-generic #37-Ubuntu SMP Mon Aug 27 15:21:48 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux
FREESURFER_HOME /media/sda1/nmrclass/freesurfer
mri_convert bold/template.nii.gz bold/tmp.bbregister.27741/template.nii
mri_convert.bin bold/template.nii.gz bold/tmp.bbregister.27741/template.nii 
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from bold/template.nii.gz...
TR=2000.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, -0, 0)
j_ras = (-0, -0.973976, -0.226651)
k_ras = (-2.36491e-18, -0.226651, 0.973976)
writing to bold/tmp.bbregister.27741/template.nii...
mri_coreg --s fsf01anat --mov bold/tmp.bbregister.27741/template.nii --regdat bold/tmp.bbregister.27741/reg.init.dat --reg bold/tmp.bbregister.27741/mri_coreg.lta --nthreads 1 --dof 6 --sep 4 --ftol .0001 --linmintol .01