$Id: make_average_surface,v 1.45 2008/02/21 20:39:49 greve Exp $ Tue Sep 9 09:30:06 EDT 2008 /autofs/space/rock_004/users/hires/recons/scripts setenv SUBJECTS_DIR /space/rock/4/users/hires/recons output ddir is /space/rock/4/users/hires/recons uid=5499(fischl) gid=5499(fischl) groups=160(fsdev),1005(cma),1013(p41),1021(stroke),1031(daragp),1046(recon),1048(seq),1050(blackrgp),1055(cagn),1071(birn),1085(reconx),1098(retinopy),1102(ellengp),1446(nandgp),1467(cardstr),3048(acqp41),5499(fischl) ==================== make_average_surface ==================== Tue Sep 9 09:30:06 EDT 2008 /autofs/space/rock_004/users/hires/recons/scripts /homes/4/fischl/dev/freesurfer/bin/make_average_surface --subjects I7_ras_recon I9_recon I14 I15 G1 I20_lh_recon I21_lh_recon I23_LH I25_lh_recon --out lh.EC_average --sdir /space/rock/4/users/hires/recons --surf-reg sphere.new.reg input subjects: I7_ras_recon I9_recon I14 I15 G1 I20_lh_recon I21_lh_recon I23_LH I25_lh_recon output subject: lh.EC_average mri_add_xform_to_header -c auto /space/rock/4/users/hires/recons/lh.EC_average/mri/mni305.cor.mgz /space/rock/4/users/hires/recons/lh.EC_average/mri/mni305.cor.mgz INFO: extension is mgz #@# Making lh registration template --------- /autofs/space/rock_004/users/hires/recons/lh.EC_average mris_make_template -norot -annot aparc lh sphere.new.reg I7_ras_recon I9_recon I14 I15 G1 I20_lh_recon I21_lh_recon I23_LH I25_lh_recon lh.reg.template.tif not aligning hemispheres before averaging. zeroing medial wall in aparc creating new parameterization... processing subject I7_ras_recon (1 of 9) reading spherical surface /space/rock/4/users/hires/recons/I7_ras_recon/surf/lh.sphere.new.reg... reading colortable from annotation file... colortable with 35 entries read (originally /autofs/space/birn_044/users/buckner_surf_atlas_rebuild/scripts/colortable_final.txt) ripping medial wall... computing parameterization for surface /space/rock/4/users/hires/recons/I7_ras_recon/surf/lh.inflated.H... curvature mean = -0.118, std = 0.848 computing parameterization for surface /space/rock/4/users/hires/recons/I7_ras_recon/surf/lh.sulc... computing parameterization for surface /space/rock/4/users/hires/recons/I7_ras_recon/surf/lh.smoothwm... processing subject I9_recon (2 of 9) reading spherical surface /space/rock/4/users/hires/recons/I9_recon/surf/lh.sphere.new.reg... reading colortable from annotation file... colortable with 35 entries read (originally /autofs/space/birn_044/users/buckner_surf_atlas_rebuild/scripts/colortable_final.txt) curvature mean = -0.022, std = 0.551 curvature mean = -0.140, std = 1.929 ripping medial wall... computing parameterization for surface /space/rock/4/users/hires/recons/I9_recon/surf/lh.inflated.H... curvature mean = -0.083, std = 0.936 computing parameterization for surface /space/rock/4/users/hires/recons/I9_recon/surf/lh.sulc... computing parameterization for surface /space/rock/4/users/hires/recons/I9_recon/surf/lh.smoothwm... processing subject I14 (3 of 9) reading spherical surface /space/rock/4/users/hires/recons/I14/surf/lh.sphere.new.reg... reading colortable from annotation file... colortable with 35 entries read (originally /autofs/space/birn_044/users/buckner_surf_atlas_rebuild/scripts/colortable_final.txt) curvature mean = -0.014, std = 0.562 curvature mean = -0.158, std = 2.640 ripping medial wall... computing parameterization for surface /space/rock/4/users/hires/recons/I14/surf/lh.inflated.H... curvature mean = -0.092, std = 0.906 computing parameterization for surface /space/rock/4/users/hires/recons/I14/surf/lh.sulc... computing parameterization for surface /space/rock/4/users/hires/recons/I14/surf/lh.smoothwm... processing subject I15 (4 of 9) reading spherical surface /space/rock/4/users/hires/recons/I15/surf/lh.sphere.new.reg... reading colortable from annotation file... colortable with 35 entries read (originally /autofs/space/birn_044/users/buckner_surf_atlas_rebuild/scripts/colortable_final.txt) curvature mean = -0.016, std = 0.541 curvature mean = -0.158, std = 2.105 ripping medial wall... computing parameterization for surface /space/rock/4/users/hires/recons/I15/surf/lh.inflated.H... curvature mean = -0.096, std = 0.884 computing parameterization for surface /space/rock/4/users/hires/recons/I15/surf/lh.sulc... computing parameterization for surface /space/rock/4/users/hires/recons/I15/surf/lh.smoothwm... processing subject G1 (5 of 9) reading spherical surface /space/rock/4/users/hires/recons/G1/surf/lh.sphere.new.reg... reading colortable from annotation file... colortable with 35 entries read (originally /autofs/space/birn_044/users/buckner_surf_atlas_rebuild/scripts/colortable_final.txt) curvature mean = -0.019, std = 0.560 curvature mean = -0.151, std = 2.822 ripping medial wall... computing parameterization for surface /space/rock/4/users/hires/recons/G1/surf/lh.inflated.H... curvature mean = -0.091, std = 0.919 computing parameterization for surface /space/rock/4/users/hires/recons/G1/surf/lh.sulc... computing parameterization for surface /space/rock/4/users/hires/recons/G1/surf/lh.smoothwm... processing subject I20_lh_recon (6 of 9) reading spherical surface /space/rock/4/users/hires/recons/I20_lh_recon/surf/lh.sphere.new.reg... reading colortable from annotation file... colortable with 35 entries read (originally /autofs/space/birn_044/users/buckner_surf_atlas_rebuild/scripts/colortable_final.txt) curvature mean = -0.016, std = 0.520 curvature mean = -0.106, std = 7.065 ripping medial wall... computing parameterization for surface /space/rock/4/users/hires/recons/I20_lh_recon/surf/lh.inflated.H... curvature mean = -0.092, std = 0.883 computing parameterization for surface /space/rock/4/users/hires/recons/I20_lh_recon/surf/lh.sulc... computing parameterization for surface /space/rock/4/users/hires/recons/I20_lh_recon/surf/lh.smoothwm... processing subject I21_lh_recon (7 of 9) reading spherical surface /space/rock/4/users/hires/recons/I21_lh_recon/surf/lh.sphere.new.reg... reading colortable from annotation file... colortable with 35 entries read (originally /autofs/space/birn_044/users/buckner_surf_atlas_rebuild/scripts/colortable_final.txt) curvature mean = -0.018, std = 0.543 curvature mean = -0.166, std = 3.183 ripping medial wall... computing parameterization for surface /space/rock/4/users/hires/recons/I21_lh_recon/surf/lh.inflated.H... curvature mean = -0.070, std = 0.918 computing parameterization for surface /space/rock/4/users/hires/recons/I21_lh_recon/surf/lh.sulc... computing parameterization for surface /space/rock/4/users/hires/recons/I21_lh_recon/surf/lh.smoothwm... processing subject I23_LH (8 of 9) reading spherical surface /space/rock/4/users/hires/recons/I23_LH/surf/lh.sphere.new.reg... reading colortable from annotation file... colortable with 35 entries read (originally /autofs/space/birn_044/users/buckner_surf_atlas_rebuild/scripts/colortable_final.txt) curvature mean = -0.010, std = 0.571 curvature mean = -0.026, std = 7.618 ripping medial wall... computing parameterization for surface /space/rock/4/users/hires/recons/I23_LH/surf/lh.inflated.H... curvature mean = 0.004, std = 0.912 computing parameterization for surface /space/rock/4/users/hires/recons/I23_LH/surf/lh.sulc... computing parameterization for surface /space/rock/4/users/hires/recons/I23_LH/surf/lh.smoothwm... processing subject I25_lh_recon (9 of 9) reading spherical surface /space/rock/4/users/hires/recons/I25_lh_recon/surf/lh.sphere.new.reg... reading colortable from annotation file... colortable with 35 entries read (originally /space/amaebi/26/users/buckner_cortical_atlas/scripts/colortable_final.txt) curvature mean = 0.014, std = 0.560 curvature mean = -0.153, std = 3.106 ripping medial wall... computing parameterization for surface /space/rock/4/users/hires/recons/I25_lh_recon/surf/lh.inflated.H... curvature mean = -0.063, std = 0.966 computing parameterization for surface /space/rock/4/users/hires/recons/I25_lh_recon/surf/lh.sulc... computing parameterization for surface /space/rock/4/users/hires/recons/I25_lh_recon/surf/lh.smoothwm... writing updated template with 9 subjects to lh.reg.template.tif... curvature mean = -0.009, std = 0.556 curvature mean = -0.087, std = 1.254 #@# Making lh annotation --------------------- Tue Sep 9 09:32:11 EDT 2008 mris_ca_label -ml-annot lh.curvature.buckner40.filled.desikan_killiany.2007-06-20.gcs 7 label/lh.aparc.annot /autofs/space/rock_004/users/hires/recons/lh.EC_average ML Label: lh.curvature.buckner40.filled.desikan_killiany.2007-06-20.gcs 7 label/lh.aparc.annot Reading icosahedron /homes/4/fischl/dev/freesurfer/lib/bem/ic7.tri Reading gcsa from /homes/4/fischl/dev/freesurfer/average/lh.curvature.buckner40.filled.desikan_killiany.2007-06-20.gcs reading color table from GCSA file.... average std = 2.1 using min determinant for regularization = 0.044 0 singular and 372 ill-conditioned covariance matrices regularized Building most likely labels Filtering labels 2 filter iterations complete (2 requested, 378 changed) writing colortable into annotation file... mris_ca_label -ml-annot lh.atlas2005_simple.gcs 7 label/lh.aparc.a2005s.annot /autofs/space/rock_004/users/hires/recons/lh.EC_average ML Label: lh.atlas2005_simple.gcs 7 label/lh.aparc.a2005s.annot Reading icosahedron /homes/4/fischl/dev/freesurfer/lib/bem/ic7.tri Reading gcsa from /homes/4/fischl/dev/freesurfer/average/lh.atlas2005_simple.gcs reading color table from GCSA file.... average std = 4.5 0.2 using min determinant for regularization = 0.000 0 singular and 1215 ill-conditioned covariance matrices regularized Building most likely labels Filtering labels 2 filter iterations complete (2 requested, 1804 changed) writing colortable into annotation file... #@# Making average lh.orig surface --------------------- Tue Sep 9 09:32:33 EDT 2008 /autofs/space/rock_004/users/hires/recons/lh.EC_average mris_make_average_surface -i 7 -o orig -sdir-out /space/rock/4/users/hires/recons lh orig_avg sphere.new.reg lh.EC_average I7_ras_recon I9_recon I14 I15 G1 I20_lh_recon I21_lh_recon I23_LH I25_lh_recon reading vertex positions from orig... --------------------------------------------------- hemi = lh avg_surf_name = orig_avg canon_surf_name = sphere.new.reg out_sname = lh.EC_average xform = talairach.xfm --------------------------------------------------- --------------------------------------------------- #@# processing subject 1/9 I7_ras_recon... Reading /space/rock/4/users/hires/recons/I7_ras_recon/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/I7_ras_recon/mri/T1.mgz Surface area: 728.2 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 2/9 I9_recon... Reading /space/rock/4/users/hires/recons/I9_recon/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/I9_recon/mri/T1 Surface area: 812.7 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 3/9 I14... Reading /space/rock/4/users/hires/recons/I14/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/I14/mri/T1 Surface area: 759.9 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 4/9 I15... Reading /space/rock/4/users/hires/recons/I15/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/I15/mri/T1.mgz Surface area: 706.8 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 5/9 G1... Reading /space/rock/4/users/hires/recons/G1/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/G1/mri/T1.mgz Surface area: 914.5 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 6/9 I20_lh_recon... Reading /space/rock/4/users/hires/recons/I20_lh_recon/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/I20_lh_recon/mri/T1.mgz Surface area: 794.3 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 7/9 I21_lh_recon... Reading /space/rock/4/users/hires/recons/I21_lh_recon/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/I21_lh_recon/mri/T1.mgz Surface area: 1008.5 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 8/9 I23_LH... Reading /space/rock/4/users/hires/recons/I23_LH/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/I23_LH/mri/T1.mgz Surface area: 913.3 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 9/9 I25_lh_recon... Reading /space/rock/4/users/hires/recons/I25_lh_recon/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/I25_lh_recon/mri/T1.mgz Surface area: 942.6 cm^2 Applying linear transform Finished loading all data Avg surf area = 842.308 cm Reading icosahedron from /homes/4/fischl/dev/freesurfer/lib/bem/ic7.tri... writing average canonical surface to /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.sphere.new.reg setting group surface area to be 842.3 cm^2 (scale=1.20) writing average orig_avg surface to /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.orig_avg writing group avg surface area 842 cm^2 into surface file mris_make_average_surface done #@# Making average lh.white surface --------------------- Tue Sep 9 09:34:31 EDT 2008 /autofs/space/rock_004/users/hires/recons/lh.EC_average mris_make_average_surface -i 7 -o white -sdir-out /space/rock/4/users/hires/recons lh white_avg sphere.new.reg lh.EC_average I7_ras_recon I9_recon I14 I15 G1 I20_lh_recon I21_lh_recon I23_LH I25_lh_recon reading vertex positions from white... --------------------------------------------------- hemi = lh avg_surf_name = white_avg canon_surf_name = sphere.new.reg out_sname = lh.EC_average xform = talairach.xfm --------------------------------------------------- --------------------------------------------------- #@# processing subject 1/9 I7_ras_recon... Reading /space/rock/4/users/hires/recons/I7_ras_recon/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/I7_ras_recon/mri/T1.mgz Surface area: 678.5 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 2/9 I9_recon... Reading /space/rock/4/users/hires/recons/I9_recon/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/I9_recon/mri/T1 Surface area: 783.6 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 3/9 I14... Reading /space/rock/4/users/hires/recons/I14/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/I14/mri/T1 Surface area: 759.9 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 4/9 I15... Reading /space/rock/4/users/hires/recons/I15/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/I15/mri/T1.mgz Surface area: 706.8 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 5/9 G1... Reading /space/rock/4/users/hires/recons/G1/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/G1/mri/T1.mgz Surface area: 914.5 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 6/9 I20_lh_recon... Reading /space/rock/4/users/hires/recons/I20_lh_recon/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/I20_lh_recon/mri/T1.mgz Surface area: 700.3 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 7/9 I21_lh_recon... Reading /space/rock/4/users/hires/recons/I21_lh_recon/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/I21_lh_recon/mri/T1.mgz Surface area: 869.5 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 8/9 I23_LH... Reading /space/rock/4/users/hires/recons/I23_LH/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/I23_LH/mri/T1.mgz Surface area: 774.1 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 9/9 I25_lh_recon... Reading /space/rock/4/users/hires/recons/I25_lh_recon/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/I25_lh_recon/mri/T1.mgz Surface area: 446.0 cm^2 Applying linear transform Finished loading all data Avg surf area = 737.013 cm Reading icosahedron from /homes/4/fischl/dev/freesurfer/lib/bem/ic7.tri... writing average canonical surface to /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.sphere.new.reg setting group surface area to be 737.0 cm^2 (scale=1.16) writing average white_avg surface to /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.white_avg writing group avg surface area 737 cm^2 into surface file mris_make_average_surface done #@# Making average lh.pial surface --------------------- Tue Sep 9 09:36:32 EDT 2008 /autofs/space/rock_004/users/hires/recons/lh.EC_average mris_make_average_surface -i 7 -o pial -sdir-out /space/rock/4/users/hires/recons lh pial_avg sphere.new.reg lh.EC_average I7_ras_recon I9_recon I14 I15 G1 I20_lh_recon I21_lh_recon I23_LH I25_lh_recon reading vertex positions from pial... --------------------------------------------------- hemi = lh avg_surf_name = pial_avg canon_surf_name = sphere.new.reg out_sname = lh.EC_average xform = talairach.xfm --------------------------------------------------- --------------------------------------------------- #@# processing subject 1/9 I7_ras_recon... Reading /space/rock/4/users/hires/recons/I7_ras_recon/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/I7_ras_recon/mri/T1.mgz Surface area: 897.6 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 2/9 I9_recon... Reading /space/rock/4/users/hires/recons/I9_recon/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/I9_recon/mri/T1 Surface area: 783.6 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 3/9 I14... Reading /space/rock/4/users/hires/recons/I14/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/I14/mri/T1 Surface area: 722.6 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 4/9 I15... Reading /space/rock/4/users/hires/recons/I15/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/I15/mri/T1.mgz Surface area: 668.9 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 5/9 G1... Reading /space/rock/4/users/hires/recons/G1/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/G1/mri/T1.mgz Surface area: 735.3 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 6/9 I20_lh_recon... Reading /space/rock/4/users/hires/recons/I20_lh_recon/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/I20_lh_recon/mri/T1.mgz Surface area: 700.3 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 7/9 I21_lh_recon... Reading /space/rock/4/users/hires/recons/I21_lh_recon/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/I21_lh_recon/mri/T1.mgz Surface area: 869.5 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 8/9 I23_LH... Reading /space/rock/4/users/hires/recons/I23_LH/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/I23_LH/mri/T1.mgz Surface area: 774.1 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 9/9 I25_lh_recon... Reading /space/rock/4/users/hires/recons/I25_lh_recon/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/I25_lh_recon/mri/T1.mgz Surface area: 433.6 cm^2 Applying linear transform Finished loading all data Avg surf area = 731.7 cm Reading icosahedron from /homes/4/fischl/dev/freesurfer/lib/bem/ic7.tri... writing average canonical surface to /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.sphere.new.reg setting group surface area to be 731.7 cm^2 (scale=1.16) writing average pial_avg surface to /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.pial_avg writing group avg surface area 732 cm^2 into surface file mris_make_average_surface done #@# Making average lh.inflated surface --------------------- Tue Sep 9 09:38:37 EDT 2008 /autofs/space/rock_004/users/hires/recons/lh.EC_average mris_make_average_surface -i 7 -o inflated -sdir-out /space/rock/4/users/hires/recons lh inflated_avg sphere.new.reg lh.EC_average I7_ras_recon I9_recon I14 I15 G1 I20_lh_recon I21_lh_recon I23_LH I25_lh_recon reading vertex positions from inflated... --------------------------------------------------- hemi = lh avg_surf_name = inflated_avg canon_surf_name = sphere.new.reg out_sname = lh.EC_average xform = talairach.xfm --------------------------------------------------- --------------------------------------------------- #@# processing subject 1/9 I7_ras_recon... Reading /space/rock/4/users/hires/recons/I7_ras_recon/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/I7_ras_recon/mri/T1.mgz Surface area: 580.0 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 2/9 I9_recon... Reading /space/rock/4/users/hires/recons/I9_recon/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/I9_recon/mri/T1 Surface area: 653.2 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 3/9 I14... Reading /space/rock/4/users/hires/recons/I14/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/I14/mri/T1 Surface area: 612.2 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 4/9 I15... Reading /space/rock/4/users/hires/recons/I15/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/I15/mri/T1.mgz Surface area: 564.3 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 5/9 G1... Reading /space/rock/4/users/hires/recons/G1/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/G1/mri/T1.mgz Surface area: 722.2 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 6/9 I20_lh_recon... Reading /space/rock/4/users/hires/recons/I20_lh_recon/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/I20_lh_recon/mri/T1.mgz Surface area: 630.5 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 7/9 I21_lh_recon... Reading /space/rock/4/users/hires/recons/I21_lh_recon/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/I21_lh_recon/mri/T1.mgz Surface area: 783.4 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 8/9 I23_LH... Reading /space/rock/4/users/hires/recons/I23_LH/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/I23_LH/mri/T1.mgz Surface area: 724.2 cm^2 Applying linear transform --------------------------------------------------- #@# processing subject 9/9 I25_lh_recon... Reading /space/rock/4/users/hires/recons/I25_lh_recon/surf/lh.sphere.new.reg Read /space/rock/4/users/hires/recons/I25_lh_recon/mri/T1.mgz Surface area: 760.6 cm^2 Applying linear transform Finished loading all data Avg surf area = 670.058 cm Reading icosahedron from /homes/4/fischl/dev/freesurfer/lib/bem/ic7.tri... writing average canonical surface to /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.sphere.new.reg setting group surface area to be 670.1 cm^2 (scale=0.95) writing average inflated_avg surface to /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.inflated_avg writing group avg surface area 670 cm^2 into surface file mris_make_average_surface done --------------------------------------------------- #@# Making average lh.sulc ---------------------- /autofs/space/rock_004/users/hires/recons/lh.EC_average mris_average_curvature -o lh.EC_average sulc lh sphere.new.reg I7_ras_recon I9_recon I14 I15 G1 I20_lh_recon I21_lh_recon I23_LH I25_lh_recon /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.avg_sulc painting output onto subject lh.EC_average. processing subject I7_ras_recon... processing subject I9_recon... processing subject I14... processing subject I15... processing subject G1... processing subject I20_lh_recon... processing subject I21_lh_recon... processing subject I23_LH... processing subject I25_lh_recon... reading output surface /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.sphere.new.reg... writing blurred pattern to surface to /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.avg_sulc writing curvature file /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.avg_sulc #@# Making average lh.curv ---------------------- /autofs/space/rock_004/users/hires/recons/lh.EC_average mris_average_curvature -o lh.EC_average curv lh sphere.new.reg I7_ras_recon I9_recon I14 I15 G1 I20_lh_recon I21_lh_recon I23_LH I25_lh_recon /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.avg_curv painting output onto subject lh.EC_average. processing subject I7_ras_recon... processing subject I9_recon... processing subject I14... processing subject I15... processing subject G1... processing subject I20_lh_recon... processing subject I21_lh_recon... processing subject I23_LH... processing subject I25_lh_recon... reading output surface /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.sphere.new.reg... writing blurred pattern to surface to /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.avg_curv writing curvature file /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.avg_curv #@# Making average lh.thickness ---------------------- /autofs/space/rock_004/users/hires/recons/lh.EC_average mris_average_curvature -o lh.EC_average thickness lh sphere.new.reg I7_ras_recon I9_recon I14 I15 G1 I20_lh_recon I21_lh_recon I23_LH I25_lh_recon /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.avg_thickness painting output onto subject lh.EC_average. processing subject I7_ras_recon... processing subject I9_recon... processing subject I14... processing subject I15... processing subject G1... processing subject I20_lh_recon... processing subject I21_lh_recon... processing subject I23_LH... processing subject I25_lh_recon... reading output surface /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.sphere.new.reg... writing blurred pattern to surface to /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.avg_thickness writing curvature file /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.avg_thickness --------------------------------------------------- #@# Smoothing, inflating, etc lh ---------------- /autofs/space/rock_004/users/hires/recons/lh.EC_average/surf mris_smooth smoothing for 5 iterations reading group avg surface area 737 cm^2 from file smoothing surface tessellation for 5 iterations... smoothing complete - recomputing first and second fundamental forms... writing smoothed curvature to ./lh.curv writing curvature file ./lh.curv writing smoothed area to ./lh.area writing curvature file ./lh.area writing smoothed surface to ./lh.smoothwm writing group avg surface area 737 cm^2 into surface file mris_inflate reading group avg surface area 737 cm^2 from file avg radius = 44.1 mm, total surface area = 52155 mm^2 tol=1.0e-04, sigma=0.0, host=jupit, nav=16, nbrs=2, l_spring_norm=1.000, l_dist=0.100 mom=0.90, dt=0.90 desired rms height=0.015 writing inflated surface to ./lh.inflated writing sulcal depths to ./lh.sulc 000: dt: 0.0000, rms height=0.049, avgs=16 005: dt: 0.9000, rms height=0.040, avgs=16, l_dist=0.40 010: dt: 0.9000, rms height=0.032, avgs=16, l_dist=0.40 015: dt: 0.9000, rms height=0.027, avgs=8, l_dist=0.28 020: dt: 0.9000, rms height=0.023, avgs=8, l_dist=0.28 025: dt: 0.9000, rms height=0.019, avgs=4, l_dist=0.20 030: dt: 0.9000, rms height=0.017, avgs=4, l_dist=0.20 035: dt: 0.9000, rms height=0.015, avgs=2, l_dist=0.14 inflation complete. writing group avg surface area 737 cm^2 into surface file writing curvature file ./lh.sulc inflation took 2.4 minutes mris_curvature averaging curvature patterns 10 times. reading group avg surface area 737 cm^2 from file total integrated curvature = 40.384*4pi (507.479) --> -39 handles ICI = 151.0, FI = 1533.4, variation=23665.182 writing Gaussian curvature to ./lh.white_avg.K...writing curvature file ./lh.white_avg.K done. writing mean curvature to ./lh.white_avg.H...writing curvature file ./lh.white_avg.H done. mri_annotation2label --subject lh.EC_average --hemi lh --outdir /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487 --annotation aparc.a2005s reading group avg surface area 737 cm^2 from file reading colortable from annotation file... colortable with 82 entries read (originally /autofs/space/birn_044/users/christophe_atlas_rebuild/Simple_surface_labels2005.txt) subject = lh.EC_average annotation = aparc.a2005s hemi = lh outdir = (null) surface = white Reading surface /space/rock/4/users/hires/recons/lh.EC_average/surf/lh.white Loading annotations from /space/rock/4/users/hires/recons/lh.EC_average/label/lh.aparc.a2005s.annot max index = 81 3 395 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_cingulate-Isthmus.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_cingulate-Isthmus.label 4 2861 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_cingulate-Main_part.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_cingulate-Main_part.label 5 1479 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_cuneus.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_cuneus.label 6 1838 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontal_inf-Opercular_part.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontal_inf-Opercular_part.label 7 462 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontal_inf-Orbital_part.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontal_inf-Orbital_part.label 8 1048 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontal_inf-Triangular_part.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontal_inf-Triangular_part.label 9 3827 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontal_middle.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontal_middle.label 10 8507 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontal_superior.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontal_superior.label 11 342 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontomarginal.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_frontomarginal.label 12 569 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_insular_long.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_insular_long.label 13 949 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_insular_short.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_insular_short.label 14 1373 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_and_S_occipital_inferior.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_and_S_occipital_inferior.label 15 2060 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_occipital_middle.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_occipital_middle.label 16 1316 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_occipital_superior.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_occipital_superior.label 17 1745 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_occipit-temp_lat-Or_fusiform.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_occipit-temp_lat-Or_fusiform.label 18 2469 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_occipit-temp_med-Lingual_part.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_occipit-temp_med-Lingual_part.label 19 2288 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_occipit-temp_med-Parahippocampal_part.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_occipit-temp_med-Parahippocampal_part.label 20 2488 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_orbital.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_orbital.label 21 2208 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_paracentral.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_paracentral.label 22 2982 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_parietal_inferior-Angular_part.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_parietal_inferior-Angular_part.label 23 4614 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_parietal_inferior-Supramarginal_part.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_parietal_inferior-Supramarginal_part.label 24 4105 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_parietal_superior.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_parietal_superior.label 25 3571 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_postcentral.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_postcentral.label 26 3992 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_precentral.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_precentral.label 27 3558 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_precuneus.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_precuneus.label 28 1106 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_rectus.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_rectus.label 29 266 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_subcallosal.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_subcallosal.label 30 1746 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_subcentral.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_subcentral.label 31 2543 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temporal_inferior.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temporal_inferior.label 32 2823 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temporal_middle.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temporal_middle.label 33 749 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temp_sup-G_temp_transv_and_interm_S.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temp_sup-G_temp_transv_and_interm_S.label 34 2656 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temp_sup-Lateral_aspect.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temp_sup-Lateral_aspect.label 35 877 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temp_sup-Planum_polare.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temp_sup-Planum_polare.label 36 1351 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temp_sup-Planum_tempolare.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_temp_sup-Planum_tempolare.label 37 730 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_and_S_transverse_frontopolar.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.G_and_S_transverse_frontopolar.label 38 410 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Lat_Fissure-ant_sgt-ramus_horizontal.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Lat_Fissure-ant_sgt-ramus_horizontal.label 39 413 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Lat_Fissure-ant_sgt-ramus_vertical.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Lat_Fissure-ant_sgt-ramus_vertical.label 40 2050 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Lat_Fissure-post_sgt.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Lat_Fissure-post_sgt.label 41 13887 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Medial_wall.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Medial_wall.label 42 1795 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Pole_occipital.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Pole_occipital.label 43 1674 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Pole_temporal.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.Pole_temporal.label 44 3122 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_calcarine.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_calcarine.label 45 4802 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_central.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_central.label 46 235 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_central_insula.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_central_insula.label 47 5552 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_cingulate-Main_part_and_Intracingulate.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_cingulate-Main_part_and_Intracingulate.label 48 1553 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_cingulate-Marginalis_part.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_cingulate-Marginalis_part.label 49 843 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_circular_insula_anterior.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_circular_insula_anterior.label 50 2214 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_circular_insula_inferior.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_circular_insula_inferior.label 51 3081 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_circular_insula_superior.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_circular_insula_superior.label 52 975 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_collateral_transverse_ant.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_collateral_transverse_ant.label 53 339 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_collateral_transverse_post.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_collateral_transverse_post.label 54 2266 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_frontal_inferior.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_frontal_inferior.label 55 1421 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_frontal_middle.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_frontal_middle.label 56 3034 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_frontal_superior.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_frontal_superior.label 57 551 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_frontomarginal.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_frontomarginal.label 58 495 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_intermedius_primus-Jensen.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_intermedius_primus-Jensen.label 59 4390 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_intraparietal-and_Parietal_transverse.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_intraparietal-and_Parietal_transverse.label 60 857 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_occipital_anterior.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_occipital_anterior.label 61 1003 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_occipital_middle_and_Lunatus.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_occipital_middle_and_Lunatus.label 62 1325 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_occipital_superior_and_transversalis.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_occipital_superior_and_transversalis.label 63 946 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_occipito-temporal_lateral.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_occipito-temporal_lateral.label 64 2543 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_occipito-temporal_medial_and_S_Lingual.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_occipito-temporal_medial_and_S_Lingual.label 65 1215 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_orbital-H_shapped.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_orbital-H_shapped.label 66 325 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_orbital_lateral.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_orbital_lateral.label 67 806 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_orbital_medial-Or_olfactory.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_orbital_medial-Or_olfactory.label 68 293 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_paracentral.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_paracentral.label 69 2208 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_parieto_occipital.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_parieto_occipital.label 70 2269 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_pericallosal.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_pericallosal.label 71 4420 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_postcentral.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_postcentral.label 72 1938 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_precentral-Inferior-part.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_precentral-Inferior-part.label 73 1902 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_precentral-Superior-part.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_precentral-Superior-part.label 74 71 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_subcentral_ant.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_subcentral_ant.label 75 263 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_subcentral_post.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_subcentral_post.label 76 493 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_suborbital.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_suborbital.label 77 1446 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_subparietal.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_subparietal.label 79 1304 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_temporal_inferior.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_temporal_inferior.label 80 6746 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_temporal_superior.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_temporal_superior.label 81 474 /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_temporal_transverse.label LabelWrite: saving to /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487/lh.S_temporal_transverse.label mri_mergelabels -o /space/rock/4/users/hires/recons/lh.EC_average/label/lh.cortex.label -d /space/rock/4/users/hires/recons/lh.EC_average/make_cortex_label.tmp.17487 Done #@# Making rh registration template --------- /autofs/space/rock_004/users/hires/recons/lh.EC_average mris_make_template -norot -annot aparc rh sphere.new.reg I7_ras_recon I9_recon I14 I15 G1 I20_lh_recon I21_lh_recon I23_LH I25_lh_recon rh.reg.template.tif not aligning hemispheres before averaging. zeroing medial wall in aparc creating new parameterization... processing subject I7_ras_recon (1 of 9) reading spherical surface /space/rock/4/users/hires/recons/I7_ras_recon/surf/rh.sphere.new.reg... MRISread(/space/rock/4/users/hires/recons/I7_ras_recon/surf/rh.sphere.new.reg): could not open file No such file or directory mris_make_template: could not read surface file /space/rock/4/users/hires/recons/I7_ras_recon/surf/rh.sphere.new.reg No such file or directory