Wed Apr 24 20:41:26 EDT 2013 /autofs/homes/010/ayendiki /usr/local/freesurfer/dev/bin/trac-all -prep -c tract/dmrirc.tutorial Subject elmo.2012 SUBJECTS_DIR /space/freesurfer/subjects/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/dev Actual FREESURFER_HOME /autofs/cluster/freesurfer/centos6_x86_64/dev build-stamp.txt: freesurfer-Linux-centos6_x86_64-dev-20130423 ayendiki launchpad Linux launchpad 2.6.32-279.22.1.el6.x86_64 #1 SMP Wed Feb 6 03:10:46 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 8192 memorylocked 64 kbytes maxproc 256703 total used free shared buffers cached Mem: 32877832 14633620 18244212 0 619880 9100676 -/+ buffers/cache: 4913064 27964768 Swap: 67108848 22796 67086052 ######################################## Program versions: $Id: trac-all,v 1.47 2013/02/23 01:59:42 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-00:41:26-GMT BuildTimeStamp: Apr 23 2013 20:04:55 CVS: $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 FLIRT version 5.5 $Id: bbregister,v 1.56 2013/03/25 18:04:29 greve Exp $ $Id: mri_cvs_register,v 1.45 2013/02/07 22:48:48 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-00:41:26-GMT BuildTimeStamp: Apr 23 2013 20:04:55 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-00:41:26-GMT BuildTimeStamp: Apr 23 2013 20:04:55 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-00:41:26-GMT BuildTimeStamp: Apr 23 2013 20:04:55 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-00:41:26-GMT BuildTimeStamp: Apr 23 2013 20:04:55 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 New invocation of trac-preproc ayendiki compute-0-3 Linux compute-0-3 2.6.32-279.22.1.el6.x86_64 #1 SMP Wed Feb 6 03:10:46 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 10240 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 7340032 kbytes descriptors 32768 memorylocked 64 kbytes maxproc 256703 total used free shared buffers cached Mem: 32877836 6017312 26860524 0 183812 1415748 -/+ buffers/cache: 4417752 28460084 Swap: 67108856 91260 67017596 #------------------------------------- /usr/local/freesurfer/dev/bin/trac-preproc #------------------------------------- #@# Image corrections Wed Apr 24 20:42:34 EDT 2013 mri_convert /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/orig/MR.1.3.12.2.1107.5.2.32.35006.2012121819455034689828982 /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_orig.nii.gz mri_convert /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/orig/MR.1.3.12.2.1107.5.2.32.35006.2012121819455034689828982 /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_orig.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/orig/MR.1.3.12.2.1107.5.2.32.35006.2012121819455034689828982... Getting Series No INFO: Found 5148 files in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/orig INFO: Scanning for Series Number 54 Scanning Directory INFO: found 70 files in series INFO: loading series header info. RunNo = 53 WARNING: Run 1 appears to be truncated Files Found: 70, Files Expected (lRep+1): 120 FileName /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/orig/MR.1.3.12.2.1107.5.2.32.35006.2012121819455034689828982 Identification NumarisVer syngo MR B17 ScannerModel TrioTim PatientName mtl_fcMRI_032 Date and time StudyDate 20121218 StudyTime 182115.144000 SeriesTime 194825.545000 AcqTime 194545.060000 Acquisition parameters PulseSeq ep_b0#1 Protocol DIFFUSION_DistCor PhEncDir COL EchoNo 1 FlipAngle 90 EchoTime 83 InversionTime -1 RepetitionTime 8020 PhEncFOV 256 ReadoutFOV 256 Image information RunNo 53 SeriesNo 54 ImageNo 1 NImageRows 1024 NImageCols 1024 NFrames 70 SliceArraylSize 64 IsMosaic 1 ImgPos 983.2478 1022.0060 359.8839 VolRes 2.0000 2.0000 2.0000 VolDim 128 128 64 Vc -0.9993 -0.0376 -0.0056 Vr 0.0367 -0.9178 -0.3954 Vs 0.0097 -0.3953 0.9185 VolCenter 0.0000 0.0000 0.0000 TransferSyntaxUID 1.2.840.10008.1.2.1 INFO: sorting. INFO: (128 128 64), nframes = 70, ismosaic=1 Could not parse NUMARIS version string syngo MR B17 found in dicom tag 18,1020 (len = 3 != 6) Repetition Time = 8020, TR = 8020 ms PE Dir COL COL AutoAlign matrix detected AutoAlign Matrix --------------------- 0.999 -0.036 0.005 4.666; 0.036 0.999 -0.002 -17.249; -0.005 0.002 1.000 -2.665; 0.000 0.000 0.000 1.000; This looks like an MGH DTI volume MGH DTI SeqPack Info 0 ep_b0#1 0.000000 1 1 ep_b0#2 0.000000 2 2 ep_b0#3 0.000000 3 3 ep_b0#4 0.000000 4 4 ep_b0#5 0.000000 5 5 ep_b0#6 0.000000 6 6 ep_b0#7 0.000000 7 7 ep_b0#8 0.000000 8 8 ep_b0#9 0.000000 9 9 ep_b0#10 0.000000 10 10 ep_b700#1 700.000000 1 11 ep_b700#2 700.000000 2 12 ep_b700#3 700.000000 3 13 ep_b700#4 700.000000 4 14 ep_b700#5 700.000000 5 15 ep_b700#6 700.000000 6 16 ep_b700#7 700.000000 7 17 ep_b700#8 700.000000 8 18 ep_b700#9 700.000000 9 19 ep_b700#10 700.000000 10 20 ep_b700#11 700.000000 11 21 ep_b700#12 700.000000 12 22 ep_b700#13 700.000000 13 23 ep_b700#14 700.000000 14 24 ep_b700#15 700.000000 15 25 ep_b700#16 700.000000 16 26 ep_b700#17 700.000000 17 27 ep_b700#18 700.000000 18 28 ep_b700#19 700.000000 19 29 ep_b700#20 700.000000 20 30 ep_b700#21 700.000000 21 31 ep_b700#22 700.000000 22 32 ep_b700#23 700.000000 23 33 ep_b700#24 700.000000 24 34 ep_b700#25 700.000000 25 35 ep_b700#26 700.000000 26 36 ep_b700#27 700.000000 27 37 ep_b700#28 700.000000 28 38 ep_b700#29 700.000000 29 39 ep_b700#30 700.000000 30 40 ep_b700#31 700.000000 31 41 ep_b700#32 700.000000 32 42 ep_b700#33 700.000000 33 43 ep_b700#34 700.000000 34 44 ep_b700#35 700.000000 35 45 ep_b700#36 700.000000 36 46 ep_b700#37 700.000000 37 47 ep_b700#38 700.000000 38 48 ep_b700#39 700.000000 39 49 ep_b700#40 700.000000 40 50 ep_b700#41 700.000000 41 51 ep_b700#42 700.000000 42 52 ep_b700#43 700.000000 43 53 ep_b700#44 700.000000 44 54 ep_b700#45 700.000000 45 55 ep_b700#46 700.000000 46 56 ep_b700#47 700.000000 47 57 ep_b700#48 700.000000 48 58 ep_b700#49 700.000000 49 59 ep_b700#50 700.000000 50 60 ep_b700#51 700.000000 51 61 ep_b700#52 700.000000 52 62 ep_b700#53 700.000000 53 63 ep_b700#54 700.000000 54 64 ep_b700#55 700.000000 55 65 ep_b700#56 700.000000 56 66 ep_b700#57 700.000000 57 67 ep_b700#58 700.000000 58 68 ep_b700#59 700.000000 59 69 ep_b700#60 700.000000 60 bValue = 700 nB0 = 10 nDir = 60 GradFile /usr/local/freesurfer/dev/diffusion/mgh-dti-seqpack/gradient_mgh_dti60.gdt FileName /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/orig/MR.1.3.12.2.1107.5.2.32.35006.2012121819550822326160025 Identification NumarisVer syngo MR B17 ScannerModel TrioTim PatientName mtl_fcMRI_032 Date and time StudyDate 20121218 StudyTime 182115.144000 SeriesTime 194825.545000 AcqTime 195500.662500 Acquisition parameters PulseSeq ep_b700#60 Protocol DIFFUSION_DistCor PhEncDir COL EchoNo 1 FlipAngle 90 EchoTime 83 InversionTime -1 RepetitionTime 8020 PhEncFOV 256 ReadoutFOV 256 Image information RunNo 53 SeriesNo 54 ImageNo 70 NImageRows 1024 NImageCols 1024 NFrames 70 SliceArraylSize 64 IsMosaic 1 ImgPos 983.2478 1022.0060 359.8839 VolRes 2.0000 2.0000 2.0000 VolDim 128 128 64 Vc -0.9993 -0.0376 -0.0056 Vr 0.0367 -0.9178 -0.3954 Vs 0.0097 -0.3953 0.9185 VolCenter 0.0000 0.0000 0.0000 TransferSyntaxUID 1.2.840.10008.1.2.1 UseSliceScaleFactor 0 (slice 0: 1) sagrev = 0, correv =0, trarev = 0 Vs = 0.00968205 -0.395289 0.918506 INFO: no Siemens slice order reversal detected (good!). TR=8020.00, TE=83.00, TI=-1.00, flip angle=90.00 i_ras = (-0.999278, -0.0375823, -0.00564044) j_ras = (0.0367492, -0.917788, -0.395367) k_ras = (0.00968205, -0.395289, 0.918506) writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_orig.nii.gz... Saving bvals and bvecs mri_probedicom --i /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/orig/MR.1.3.12.2.1107.5.2.32.35006.2012121819455034689828982 > /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dcminfo.dat flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_orig.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_orig_flip.nii.gz INFO: input image orientation is LPS INFO: input image determinant is 8 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_orig.nii.gz x -y z /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_orig_flip.nii.gz INFO: left-right orientation was flipped by fslswapdim fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_orig_flip.nii.gz INFO: found /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_orig.mghdti.bvals, converting to FSL format INFO: found /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_orig.mghdti.bvecs, converting to FSL format mv -f /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_orig_flip.mghdti.bvecs /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/bvecs mv -f /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_orig_flip.mghdti.bvals /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/bvals eddy_correct /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_orig_flip.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz 0 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0000 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0001 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0002 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0003 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0004 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0005 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0006 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0007 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0008 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0009 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0010 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0011 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0012 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0013 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0014 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0015 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0016 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0017 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0018 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0019 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0020 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0021 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0022 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0023 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0024 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0025 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0026 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0027 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0028 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0029 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0030 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0031 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0032 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0033 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0034 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0035 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0036 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0037 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0038 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0039 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0040 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0041 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0042 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0043 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0044 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0045 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0046 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0047 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0048 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0049 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0050 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0051 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0052 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0053 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0054 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0055 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0056 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0057 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0058 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0059 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0060 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0061 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0062 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0063 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0064 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0065 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0066 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0067 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0068 processing /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_tmp0069 mv -f /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/bvecs /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/bvecs.norot xfmrot /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.ecclog /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/bvecs.norot /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/bvecs ln -sf /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/data.nii.gz mri_convert --frame 0 /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame0.nii.gz mri_convert --frame 0 /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame0.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999278, -0.0375823, -0.00564044) j_ras = (-0.0367492, 0.917788, 0.395367) k_ras = (0.00968205, -0.395289, 0.918506) keeping frame 0 writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame0.nii.gz... mri_convert --frame 1 /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame1.nii.gz mri_convert --frame 1 /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame1.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999278, -0.0375823, -0.00564044) j_ras = (-0.0367492, 0.917788, 0.395367) k_ras = (0.00968205, -0.395289, 0.918506) keeping frame 1 writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame1.nii.gz... mri_convert --frame 2 /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame2.nii.gz mri_convert --frame 2 /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame2.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999278, -0.0375823, -0.00564044) j_ras = (-0.0367492, 0.917788, 0.395367) k_ras = (0.00968205, -0.395289, 0.918506) keeping frame 2 writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame2.nii.gz... mri_convert --frame 3 /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame3.nii.gz mri_convert --frame 3 /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame3.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999278, -0.0375823, -0.00564044) j_ras = (-0.0367492, 0.917788, 0.395367) k_ras = (0.00968205, -0.395289, 0.918506) keeping frame 3 writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame3.nii.gz... mri_convert --frame 4 /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame4.nii.gz mri_convert --frame 4 /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame4.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999278, -0.0375823, -0.00564044) j_ras = (-0.0367492, 0.917788, 0.395367) k_ras = (0.00968205, -0.395289, 0.918506) keeping frame 4 writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame4.nii.gz... mri_convert --frame 5 /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame5.nii.gz mri_convert --frame 5 /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame5.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999278, -0.0375823, -0.00564044) j_ras = (-0.0367492, 0.917788, 0.395367) k_ras = (0.00968205, -0.395289, 0.918506) keeping frame 5 writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame5.nii.gz... mri_convert --frame 6 /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame6.nii.gz mri_convert --frame 6 /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame6.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999278, -0.0375823, -0.00564044) j_ras = (-0.0367492, 0.917788, 0.395367) k_ras = (0.00968205, -0.395289, 0.918506) keeping frame 6 writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame6.nii.gz... mri_convert --frame 7 /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame7.nii.gz mri_convert --frame 7 /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame7.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999278, -0.0375823, -0.00564044) j_ras = (-0.0367492, 0.917788, 0.395367) k_ras = (0.00968205, -0.395289, 0.918506) keeping frame 7 writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame7.nii.gz... mri_convert --frame 8 /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame8.nii.gz mri_convert --frame 8 /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame8.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999278, -0.0375823, -0.00564044) j_ras = (-0.0367492, 0.917788, 0.395367) k_ras = (0.00968205, -0.395289, 0.918506) keeping frame 8 writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame8.nii.gz... mri_convert --frame 9 /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame9.nii.gz mri_convert --frame 9 /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame9.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999278, -0.0375823, -0.00564044) j_ras = (-0.0367492, 0.917788, 0.395367) k_ras = (0.00968205, -0.395289, 0.918506) keeping frame 9 writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame9.nii.gz... mri_concat --i /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame0.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame1.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame2.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame3.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame4.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame5.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame6.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame7.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame8.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_frame9.nii.gz --mean --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/lowb.nii.gz ninputs = 10 Checking inputs nframestot = 10 Allocing output Done allocing nframes = 10 Computing mean across frames Writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/lowb.nii.gz bet /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/lowb.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/lowb_brain.nii.gz -m -f 0.3 mv -f /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/lowb_brain_mask.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff #------------------------------------- #@# Intra-subject registration Wed Apr 24 21:24:05 EDT 2013 mri_convert /space/freesurfer/subjects/diffusion_recons/elmo.2012/mri/brain.mgz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/brain_anat_orig.nii.gz mri_convert /space/freesurfer/subjects/diffusion_recons/elmo.2012/mri/brain.mgz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_recons/elmo.2012/mri/brain.mgz... TR=2530.00, TE=1.74, TI=-1.00, flip angle=7.00 i_ras = (-1, -1.30385e-07, 8.9407e-08) j_ras = (1.08499e-07, 2.22353e-08, -1) k_ras = (-5.96046e-08, 1, -1.39989e-08) writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/brain_anat_orig.nii.gz... flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/brain_anat_orig.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/brain_anat_orig.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/brain_anat.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/brain_anat.nii.gz tkregister2 --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/brain_anat_orig.nii.gz --targ /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anatorig2anat.mat --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/dev/tktools/tkregister2.tcl target volume /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/brain_anat.nii.gz movable volume /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/brain_anat_orig.nii.gz reg file /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.126 2012/01/20 21:00:37 greve Exp $ Diagnostic Level -1 INFO: loading target /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.000 0.000 0.000 0.000; -0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 1.000 0.000 0.000 0.000; -0.000 1.000 0.000 0.000; 0.000 0.000 1.000 1.000; 0.000 0.000 0.000 1.000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.000 0.000 0.000 0.000; -0.000 0.000 -1.000 0.000; 0.000 1.000 0.000 1.000; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anat2anatorig.mat -inverse /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anatorig2anat.mat Log file is /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anatorig2diff.bbr.dat.log Wed Apr 24 21:24:18 EDT 2013 setenv SUBJECTS_DIR /space/freesurfer/subjects/diffusion_recons cd /homes/10/ayendiki /usr/local/freesurfer/dev/bin/bbregister --s elmo.2012 --init-fsl --dti --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anatorig2diff.bbr.dat --fslmat /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/diff2anatorig.bbr.mat $Id: bbregister,v 1.56 2013/03/25 18:04:29 greve Exp $ Linux compute-0-3 2.6.32-279.22.1.el6.x86_64 #1 SMP Wed Feb 6 03:10:46 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /usr/local/freesurfer/dev mri_convert /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/template.nii mri_convert /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/template.nii $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999278, -0.0375823, -0.00564044) j_ras = (-0.0367492, 0.917788, 0.395367) k_ras = (0.00968205, -0.395289, 0.918506) writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/template.nii... fslregister --s elmo.2012 --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/template.nii --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/reg.init.dat --niters 1 --maxangle 90 --tmp /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/fslregister --dof 6 --fsvol brainmask.mgz --nobetmov Log file is /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/reg.init.dat.fslregister.log Wed Apr 24 21:25:16 EDT 2013 --s elmo.2012 --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/template.nii --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/reg.init.dat --niters 1 --maxangle 90 --tmp /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/fslregister --dof 6 --fsvol brainmask.mgz --nobetmov $Id: fslregister,v 1.36 2012/11/08 16:18:43 greve Exp $ compute-0-3 Linux compute-0-3 2.6.32-279.22.1.el6.x86_64 #1 SMP Wed Feb 6 03:10:46 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux nIters 1 -------------------------------------- /homes/10/ayendiki mri_convert /space/freesurfer/subjects/diffusion_recons/elmo.2012/mri/brainmask.mgz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/fslregister/refvol.fslregister.nii mri_convert /space/freesurfer/subjects/diffusion_recons/elmo.2012/mri/brainmask.mgz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/fslregister/refvol.fslregister.nii $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_recons/elmo.2012/mri/brainmask.mgz... TR=2530.00, TE=1.74, TI=-1.00, flip angle=7.00 i_ras = (-1, -1.30385e-07, 8.9407e-08) j_ras = (1.08499e-07, 2.22353e-08, -1) k_ras = (-5.96046e-08, 1, -1.39989e-08) writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/fslregister/refvol.fslregister.nii... -------------------------------------- /homes/10/ayendiki mri_convert /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/template.nii /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/fslregister/movvol.fslregister.nii --frame 0 mri_convert /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/template.nii /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/fslregister/movvol.fslregister.nii --frame 0 $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/template.nii... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999278, -0.0375823, -0.00564044) j_ras = (-0.0367492, 0.917788, 0.395367) k_ras = (0.00968205, -0.395289, 0.918506) keeping frame 0 writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/fslregister/movvol.fslregister.nii... Mov determinant is -8 /homes/10/ayendiki tkregister2_cmdl --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/fslregister/movvol.fslregister.nii --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/fslregister/reg0.14966.dat --regheader --fslregout /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/reg.init.dat.fsl.mat0 --s elmo.2012 --noedit tkregister_tcl /usr/local/freesurfer/dev/tktools/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/fslregister/movvol.fslregister.nii reg file /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/fslregister/reg0.14966.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.126 2012/01/20 21:00:37 greve Exp $ Diagnostic Level -1 INFO: loading target /space/freesurfer/subjects/diffusion_recons/elmo.2012/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/fslregister/movvol.fslregister.nii Tmov: -------------------- -2.000 0.000 0.000 128.000; 0.000 0.000 2.000 -64.000; 0.000 -2.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 0.999 0.038 0.006 -0.502; 0.010 -0.395 0.919 -30.684; 0.037 -0.918 -0.395 3.327; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 0.999 0.038 0.006 -0.502; 0.010 -0.395 0.919 -30.684; 0.037 -0.918 -0.395 3.327; 0.000 0.000 0.000 1.000; Determinant 1 subject = elmo.2012 RegMat --------------------------- 0.999 0.038 0.006 -0.502; 0.010 -0.395 0.919 -30.684; 0.037 -0.918 -0.395 3.327; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI tkreg2FSL: mov det = -8, ref det = -1 Wed Apr 24 21:25:29 EDT 2013 /homes/10/ayendiki flirt.fsl -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/fslregister/refvol.fslregister.nii -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/fslregister/fslmat0.trans.mat -schedule /usr/pubsw/packages/fsl/current/etc/flirtsch/xyztrans.sch -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/reg.init.dat.fsl.mat0 Wed Apr 24 21:25:50 EDT 2013 /homes/10/ayendiki flirt.fsl -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/fslregister/refvol.fslregister.nii -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/reg.init.dat.fsl.mat -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/fslregister/fslmat0.trans.mat -schedule /usr/local/freesurfer/dev/bin/flirt.newdefault.20080811.sch tkregister2_cmdl --s elmo.2012 --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/template.nii --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/reg.init.dat --fslreg /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/reg.init.dat.fsl.mat --noedit tkregister_tcl /usr/local/freesurfer/dev/tktools/tkregister2.tcl ---- FSL registration matrix -------- 0.999 0.040 -0.004 -4.896; 0.011 -0.367 -0.930 202.198; -0.038 0.930 -0.367 27.370; 0.000 0.000 0.000 1.000; --------------------------------------- INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/template.nii reg file /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/reg.init.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.126 2012/01/20 21:00:37 greve Exp $ Diagnostic Level -1 INFO: loading target /space/freesurfer/subjects/diffusion_recons/elmo.2012/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/template.nii Tmov: -------------------- -2.000 0.000 0.000 128.000; 0.000 0.000 2.000 -64.000; 0.000 -2.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 FSLOUTPUTTYPE NIFTI fsl2TkReg: mov det = -8, ref det = -1 ---- Input registration matrix (computed) -------- 0.999 0.038 0.011 -0.135; 0.004 -0.367 0.930 -32.387; 0.040 -0.930 -0.367 2.004; 0.000 0.000 0.000 1.000; --------------------------------------- ---- Input registration matrix -------- 0.999 0.038 0.011 -0.135; 0.004 -0.367 0.930 -32.387; 0.040 -0.930 -0.367 2.004; 0.000 0.000 0.000 1.000; Determinant 1 subject = elmo.2012 RegMat --------------------------- 0.999 0.038 0.011 -0.135; 0.004 -0.367 0.930 -32.387; 0.040 -0.930 -0.367 2.004; 0.000 0.000 0.000 1.000; Started at Wed Apr 24 21:25:17 EDT 2013 Ended at Wed Apr 24 21:26:26 EDT 2013 fslregister Done To check results, run: tkregister2 --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/template.nii --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/reg.init.dat --surf orig mri_segreg --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/template.nii --init-reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/reg.init.dat --out-reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.105 2011/10/27 18:36:43 greve Exp $ setenv SUBJECTS_DIR /space/freesurfer/subjects/diffusion_recons cd /autofs/homes/010/ayendiki mri_segreg --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/template.nii --init-reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/reg.init.dat --out-reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 sysname Linux hostname compute-0-3 machine x86_64 user ayendiki movvol /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/template.nii regfile /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/reg.init.dat subject elmo.2012 dof 6 outregfile /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/bbr.pass1.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 100 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000100 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1367295083 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 0.999 0.038 0.011 -0.135; 0.004 -0.367 0.930 -32.387; 0.040 -0.930 -0.367 2.004; 0.000 0.000 0.000 1.000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Using lh.cortex.label Using rh.cortex.label Computing relative cost 0 -25.0 -25.0 -25.0 1.002704 1 -25.0 -25.0 25.0 1.017829 2 -25.0 25.0 -25.0 1.003894 3 -25.0 25.0 25.0 0.977542 4 25.0 -25.0 -25.0 1.002915 5 25.0 -25.0 25.0 0.996731 6 25.0 25.0 -25.0 1.027332 7 25.0 25.0 25.0 1.045094 REL: 8 0.311583 8.074042 1.009255 rel = 0.308726 Initial costs ---------------- Number of surface hits 2735 WM Intensity 238.5029 +/- 66.1667 Ctx Intensity 314.0423 +/- 95.9477 Pct Contrast 25.8692 +/- 27.7436 Cost 0.3116 RelCost 0.3087 ------------------------------------ Brute force preopt -4 4 4, n = 729 0 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.9622 0.9622 0.0 2 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 0.9576 0.9576 0.0 3 -4.0000 -4.0000 -4.0000 -4.0000 0.0000 -4.0000 0.9540 0.9540 0.0 4 -4.0000 -4.0000 -4.0000 -4.0000 0.0000 0.0000 0.9308 0.9308 0.0 5 -4.0000 -4.0000 -4.0000 -4.0000 0.0000 4.0000 0.9215 0.9215 0.0 7 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 0.0000 0.8949 0.8949 0.0 33 -4.0000 -4.0000 0.0000 -4.0000 4.0000 -4.0000 0.8657 0.8657 0.0 46 -4.0000 -4.0000 0.0000 4.0000 -4.0000 0.0000 0.8568 0.8568 0.0 111 -4.0000 0.0000 0.0000 -4.0000 0.0000 -4.0000 0.8473 0.8473 0.0 117 -4.0000 0.0000 0.0000 0.0000 -4.0000 -4.0000 0.8268 0.8268 0.0 118 -4.0000 0.0000 0.0000 0.0000 -4.0000 0.0000 0.7840 0.7840 0.0 120 -4.0000 0.0000 0.0000 0.0000 0.0000 -4.0000 0.7734 0.7734 0.0 274 0.0000 -4.0000 0.0000 -4.0000 0.0000 0.0000 0.7421 0.7421 0.0 354 0.0000 0.0000 0.0000 -4.0000 0.0000 -4.0000 0.7047 0.7047 0.0 355 0.0000 0.0000 0.0000 -4.0000 0.0000 0.0000 0.5658 0.5658 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.3116 0.3116 0.0 Brute Force -------------------------- Min cost was 0.311583 Number of iterations 729 Search time 1.617000 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 0 4 0 5 0 fs_powell::minimize nparams 6 maxfev 36 ftol 0.000100 linmin_xtol_ 0.001000 powell nthiter 0 7 -0.071 0.000 0.000 0.000 0.000 0.000 0.3091508141 10 -0.085 0.000 0.000 0.000 0.000 0.000 0.3089316637 11 -0.088 0.000 0.000 0.000 0.000 0.000 0.3089306297 13 -0.087 0.000 0.000 0.000 0.000 0.000 0.3089290344 14 -0.086 0.000 0.000 0.000 0.000 0.000 0.3089289007 16 -0.086 1.000 0.000 0.000 0.000 0.000 0.3053513078 20 -0.086 0.618 0.000 0.000 0.000 0.000 0.2939906912 21 -0.086 0.554 0.000 0.000 0.000 0.000 0.2907241836 22 -0.086 0.342 0.000 0.000 0.000 0.000 0.2892137256 23 -0.086 0.425 0.000 0.000 0.000 0.000 0.2855514415 24 -0.086 0.439 0.000 0.000 0.000 0.000 0.2853602182 26 -0.086 0.445 0.000 0.000 0.000 0.000 0.2853419820 30 -0.086 0.445 1.000 0.000 0.000 0.000 0.2756816100 34 -0.086 0.445 0.618 0.000 0.000 0.000 0.2679578337 37 -0.086 0.445 0.616 0.000 0.000 0.000 0.2679524226 38 -0.086 0.445 0.612 0.000 0.000 0.000 0.2679510357 40 -0.086 0.445 0.614 0.000 0.000 0.000 0.2679487636 44 -0.086 0.445 0.614 -1.618 0.000 0.000 0.2078583969 45 -0.086 0.445 0.614 -1.297 0.000 0.000 0.1945119891 48 -0.086 0.445 0.614 -1.108 0.000 0.000 0.1883502408 49 -0.086 0.445 0.614 -1.074 0.000 0.000 0.1877724148 51 -0.086 0.445 0.614 -1.035 0.000 0.000 0.1872842160 52 -0.086 0.445 0.614 -1.030 0.000 0.000 0.1872623722 53 -0.086 0.445 0.614 -1.022 0.000 0.000 0.1872466007 54 -0.086 0.445 0.614 -1.020 0.000 0.000 0.1872464578 64 -0.086 0.445 0.614 -1.020 0.041 0.000 0.1872098794 65 -0.086 0.445 0.614 -1.020 0.025 0.000 0.1871496326 66 -0.086 0.445 0.614 -1.020 0.023 0.000 0.1871468708 67 -0.086 0.445 0.614 -1.020 0.019 0.000 0.1871423925 69 -0.086 0.445 0.614 -1.020 0.017 0.000 0.1871414031 79 -0.086 0.445 0.614 -1.020 0.017 0.036 0.1867480779 81 -0.086 0.445 0.614 -1.020 0.017 0.035 0.1867462376 82 -0.086 0.445 0.614 -1.020 0.017 0.032 0.1867462116 85 -0.086 0.445 0.614 -1.020 0.017 0.033 0.1867457250 powell nthiter 1 96 -0.078 0.445 0.614 -1.020 0.017 0.033 0.1866909445 106 -0.078 0.505 0.614 -1.020 0.017 0.033 0.1862647398 107 -0.078 0.492 0.614 -1.020 0.017 0.033 0.1862085549 108 -0.078 0.489 0.614 -1.020 0.017 0.033 0.1862047173 109 -0.078 0.487 0.614 -1.020 0.017 0.033 0.1862031300 111 -0.078 0.486 0.614 -1.020 0.017 0.033 0.1862030009 119 -0.078 0.486 0.784 -1.020 0.017 0.033 0.1819760411 120 -0.078 0.486 0.791 -1.020 0.017 0.033 0.1819271995 122 -0.078 0.486 0.805 -1.020 0.017 0.033 0.1818652626 124 -0.078 0.486 0.806 -1.020 0.017 0.033 0.1818651711 132 -0.078 0.486 0.806 -1.123 0.017 0.033 0.1781938006 134 -0.078 0.486 0.806 -1.153 0.017 0.033 0.1781048646 135 -0.078 0.486 0.806 -1.144 0.017 0.033 0.1780425205 136 -0.078 0.486 0.806 -1.141 0.017 0.033 0.1780339401 137 -0.078 0.486 0.806 -1.139 0.017 0.033 0.1780336877 145 -0.078 0.486 0.806 -1.139 0.025 0.033 0.1779821088 146 -0.078 0.486 0.806 -1.139 0.046 0.033 0.1779154964 148 -0.078 0.486 0.806 -1.139 0.044 0.033 0.1779150025 150 -0.078 0.486 0.806 -1.139 0.045 0.033 0.1779148906 157 -0.078 0.486 0.806 -1.139 0.045 0.069 0.1778049251 158 -0.078 0.486 0.806 -1.139 0.045 0.076 0.1777683092 160 -0.078 0.486 0.806 -1.139 0.045 0.125 0.1774629380 162 -0.078 0.486 0.806 -1.139 0.045 0.116 0.1774128827 164 -0.078 0.486 0.806 -1.139 0.045 0.114 0.1774091665 powell nthiter 2 174 -0.121 0.486 0.806 -1.139 0.045 0.114 0.1772122669 175 -0.119 0.486 0.806 -1.139 0.045 0.114 0.1772099577 177 -0.120 0.486 0.806 -1.139 0.045 0.114 0.1772096874 189 -0.120 0.485 0.806 -1.139 0.045 0.114 0.1772089640 199 -0.120 0.485 0.812 -1.139 0.045 0.114 0.1771960601 201 -0.120 0.485 0.813 -1.139 0.045 0.114 0.1771960214 212 -0.120 0.485 0.813 -1.134 0.045 0.114 0.1771890758 213 -0.120 0.485 0.813 -1.135 0.045 0.114 0.1771887648 223 -0.120 0.485 0.813 -1.135 0.047 0.114 0.1771806189 224 -0.120 0.485 0.813 -1.135 0.051 0.114 0.1771789689 226 -0.120 0.485 0.813 -1.135 0.050 0.114 0.1771778564 235 -0.120 0.485 0.813 -1.135 0.050 0.174 0.1770022312 237 -0.120 0.485 0.813 -1.135 0.050 0.155 0.1767898461 239 -0.120 0.485 0.813 -1.135 0.050 0.156 0.1767882015 powell nthiter 3 251 -0.114 0.485 0.813 -1.135 0.050 0.156 0.1767448541 264 -0.114 0.481 0.813 -1.135 0.050 0.156 0.1767220265 266 -0.114 0.479 0.813 -1.135 0.050 0.156 0.1767199192 276 -0.114 0.479 0.815 -1.135 0.050 0.156 0.1767174343 285 -0.114 0.479 0.815 -1.152 0.050 0.156 0.1766299380 287 -0.114 0.479 0.815 -1.151 0.050 0.156 0.1766279014 288 -0.114 0.479 0.815 -1.149 0.050 0.156 0.1766261266 297 -0.114 0.479 0.815 -1.149 0.032 0.156 0.1765540494 299 -0.114 0.479 0.815 -1.149 0.036 0.156 0.1765454660 300 -0.114 0.479 0.815 -1.149 0.037 0.156 0.1765446344 310 -0.114 0.479 0.815 -1.149 0.037 0.151 0.1765362926 311 -0.114 0.479 0.815 -1.149 0.037 0.152 0.1765357610 powell nthiter 4 323 -0.109 0.479 0.815 -1.149 0.037 0.152 0.1765274019 324 -0.110 0.479 0.815 -1.149 0.037 0.152 0.1765255037 337 -0.110 0.482 0.815 -1.149 0.037 0.152 0.1765210375 356 -0.110 0.482 0.815 -1.157 0.037 0.152 0.1765169150 357 -0.110 0.482 0.815 -1.156 0.037 0.152 0.1765142874 358 -0.110 0.482 0.815 -1.153 0.037 0.152 0.1765125245 360 -0.110 0.482 0.815 -1.154 0.037 0.152 0.1765124893 367 -0.110 0.482 0.815 -1.154 0.026 0.152 0.1765095014 368 -0.110 0.482 0.815 -1.154 0.030 0.152 0.1765009655 369 -0.110 0.482 0.815 -1.154 0.031 0.152 0.1765004862 380 -0.110 0.482 0.815 -1.154 0.031 0.150 0.1764985912 powell nthiter 5 393 -0.109 0.482 0.815 -1.154 0.031 0.150 0.1764980196 417 -0.109 0.482 0.816 -1.154 0.031 0.150 0.1764976541 428 -0.109 0.482 0.816 -1.155 0.031 0.150 0.1764973010 438 -0.109 0.482 0.816 -1.155 0.030 0.150 0.1764968907 449 -0.109 0.482 0.816 -1.155 0.030 0.149 0.1764967636 Powell done niters = 5 Computing relative cost 0 -25.0 -25.0 -25.0 1.013736 1 -25.0 -25.0 25.0 1.001880 2 -25.0 25.0 -25.0 1.009852 3 -25.0 25.0 25.0 0.986873 4 25.0 -25.0 -25.0 0.997113 5 25.0 -25.0 25.0 1.025638 6 25.0 25.0 -25.0 0.988435 7 25.0 25.0 25.0 1.058667 REL: 8 0.176497 8.082194 1.010274 rel = 0.174702 Number of iterations 5 Min cost was 0.176497 Number of FunctionCalls 451 TolPowell 0.000100 nMaxItersPowell 36 OptimizationTime 0.808000 sec Parameters at optimum (transmm) -0.10933 0.48153 0.81627 Parameters at optimum (rotdeg) -1.15546 0.02989 0.14910 Final costs ---------------- Number of surface hits 2735 WM Intensity 234.1034 +/- 63.7311 Ctx Intensity 316.6350 +/- 88.0054 Pct Contrast 29.1835 +/- 23.6732 Cost 0.1765 RelCost 0.3087 Reg at min cost was 0.999 0.039 0.008 -0.159; 0.007 -0.385 0.923 -31.859; 0.039 -0.922 -0.385 3.473; 0.000 0.000 0.000 1.000; Writing optimal reg to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/bbr.pass1.dat, type = 14 Original Reg 0.999 0.038 0.011 -0.135; 0.004 -0.367 0.930 -32.387; 0.040 -0.930 -0.367 2.004; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg -0.000 -0.001 0.003 0.024; -0.003 0.019 0.008 -0.528; 0.001 -0.008 0.019 -1.469; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 1.317425 Computing change in rh position Surface RMS Diff (mm) 1.334809 2.565733 mri_segreg done mri_segreg --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/template.nii --init-reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/bbr.pass1.dat --out-reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anatorig2diff.bbr.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anatorig2diff.bbr.dat.param --surf white --cur-reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.105 2011/10/27 18:36:43 greve Exp $ setenv SUBJECTS_DIR /space/freesurfer/subjects/diffusion_recons cd /autofs/homes/010/ayendiki mri_segreg --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/template.nii --init-reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/bbr.pass1.dat --out-reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anatorig2diff.bbr.dat --brute -0.1 0.1 0.1 --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anatorig2diff.bbr.dat.param --surf white --cur-reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 sysname Linux hostname compute-0-3 machine x86_64 user ayendiki movvol /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/template.nii regfile /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/tmp.bbregister.14312/bbr.pass1.dat subject elmo.2012 dof 6 outregfile /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anatorig2diff.bbr.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 1 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000000 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1367695150 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 0.999 0.039 0.008 -0.159; 0.007 -0.385 0.923 -31.859; 0.039 -0.922 -0.385 3.473; 0.000 0.000 0.000 1.000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness Projecting RH Surfs Using lh.cortex.label Using rh.cortex.label Computing relative cost 0 -25.0 -25.0 -25.0 1.013427 1 -25.0 -25.0 25.0 1.011518 2 -25.0 25.0 -25.0 1.010353 3 -25.0 25.0 25.0 0.996435 4 25.0 -25.0 -25.0 1.006443 5 25.0 -25.0 25.0 1.018685 6 25.0 25.0 -25.0 0.998803 7 25.0 25.0 25.0 1.003406 REL: 8 0.180800 8.059069 1.007384 rel = 0.179475 Initial costs ---------------- Number of surface hits 271549 WM Intensity 233.3160 +/- 64.9389 Ctx Intensity 315.2570 +/- 84.0800 Pct Contrast 29.2293 +/- 23.8122 Cost 0.1808 RelCost 0.1795 ------------------------------------ Brute force preopt -0.1 0.1 0.1, n = 729 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.1855 0.1855 0.0 1 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.1848 0.1848 0.0 2 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.1000 0.1839 0.1839 0.0 4 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.0000 0.1820 0.1820 0.0 5 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.1000 0.1802 0.1802 0.0 30 -0.1000 -0.1000 0.0000 -0.1000 0.0000 -0.1000 0.1800 0.1800 0.0 33 -0.1000 -0.1000 0.0000 -0.1000 0.1000 -0.1000 0.1797 0.1797 0.0 112 -0.1000 0.0000 0.0000 -0.1000 0.0000 0.0000 0.1795 0.1795 0.0 123 -0.1000 0.0000 0.0000 0.0000 0.1000 -0.1000 0.1780 0.1780 0.0 274 0.0000 -0.1000 0.0000 -0.1000 0.0000 0.0000 0.1777 0.1777 0.0 363 0.0000 0.0000 0.0000 0.0000 0.0000 -0.1000 0.1777 0.1777 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1765 0.1765 0.0 Brute Force -------------------------- Min cost was 0.176497 Number of iterations 729 Search time 1.680000 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 0 4 0 5 0 fs_powell::minimize nparams 6 maxfev 36 ftol 0.000000 linmin_xtol_ 0.001000 powell nthiter 0 7 0.064 0.000 0.000 0.000 0.000 0.000 0.1805809895 10 0.068 0.000 0.000 0.000 0.000 0.000 0.1805792248 11 0.069 0.000 0.000 0.000 0.000 0.000 0.1805791202 19 0.069 -0.158 0.000 0.000 0.000 0.000 0.1784988092 20 0.069 -0.155 0.000 0.000 0.000 0.000 0.1784976359 30 0.069 -0.155 -0.004 0.000 0.000 0.000 0.1784974117 31 0.069 -0.155 -0.002 0.000 0.000 0.000 0.1784971982 39 0.069 -0.155 -0.002 -0.050 0.000 0.000 0.1782597576 41 0.069 -0.155 -0.002 -0.051 0.000 0.000 0.1782596857 49 0.069 -0.155 -0.002 -0.051 -0.047 0.000 0.1781793369 51 0.069 -0.155 -0.002 -0.051 -0.042 0.000 0.1781782288 52 0.069 -0.155 -0.002 -0.051 -0.043 0.000 0.1781782107 60 0.069 -0.155 -0.002 -0.051 -0.043 -0.095 0.1779820839 61 0.069 -0.155 -0.002 -0.051 -0.043 -0.067 0.1779357313 62 0.069 -0.155 -0.002 -0.051 -0.043 -0.066 0.1779356094 powell nthiter 1 72 0.067 -0.155 -0.002 -0.051 -0.043 -0.065 0.1779325109 73 0.060 -0.155 -0.002 -0.051 -0.043 -0.065 0.1779281056 75 0.059 -0.155 -0.002 -0.051 -0.043 -0.065 0.1779280319 83 0.059 -0.166 -0.002 -0.051 -0.043 -0.065 0.1779176135 93 0.059 -0.166 0.007 -0.051 -0.043 -0.065 0.1779153434 94 0.059 -0.166 0.005 -0.051 -0.043 -0.065 0.1779148942 95 0.059 -0.166 0.004 -0.051 -0.043 -0.065 0.1779148268 96 0.059 -0.166 0.003 -0.051 -0.043 -0.065 0.1779148239 105 0.059 -0.166 0.003 -0.045 -0.043 -0.065 0.1779123783 115 0.059 -0.166 0.003 -0.045 -0.042 -0.065 0.1779111942 116 0.059 -0.166 0.003 -0.045 -0.035 -0.065 0.1779039583 121 0.059 -0.166 0.003 -0.045 -0.032 -0.065 0.1779027669 132 0.059 -0.166 0.003 -0.045 -0.032 -0.066 0.1779026717 powell nthiter 2 142 0.053 -0.166 0.003 -0.045 -0.032 -0.066 0.1779010263 143 0.055 -0.166 0.003 -0.045 -0.032 -0.066 0.1779005656 151 0.055 -0.163 0.003 -0.045 -0.032 -0.066 0.1778992699 152 0.055 -0.162 0.003 -0.045 -0.032 -0.066 0.1778991549 161 0.055 -0.162 0.012 -0.045 -0.032 -0.066 0.1778963497 162 0.055 -0.162 0.011 -0.045 -0.032 -0.066 0.1778962328 171 0.055 -0.162 0.011 -0.042 -0.032 -0.066 0.1778952625 182 0.055 -0.162 0.011 -0.043 -0.028 -0.066 0.1778935461 192 0.055 -0.162 0.011 -0.043 -0.028 -0.071 0.1778931510 193 0.055 -0.162 0.011 -0.043 -0.028 -0.069 0.1778930097 powell nthiter 3 203 0.049 -0.162 0.011 -0.043 -0.028 -0.069 0.1778927878 204 0.052 -0.162 0.011 -0.043 -0.028 -0.069 0.1778918908 222 0.052 -0.162 0.014 -0.043 -0.028 -0.069 0.1778918205 223 0.052 -0.162 0.013 -0.043 -0.028 -0.069 0.1778918103 224 0.052 -0.162 0.012 -0.043 -0.028 -0.069 0.1778917536 232 0.052 -0.162 0.012 -0.041 -0.028 -0.069 0.1778913772 250 0.052 -0.162 0.012 -0.041 -0.028 -0.073 0.1778911949 253 0.049 -0.162 0.013 -0.040 -0.028 -0.074 0.1778911942 259 0.050 -0.162 0.012 -0.040 -0.028 -0.073 0.1778910086 261 0.050 -0.162 0.012 -0.041 -0.028 -0.073 0.1778909257 265 0.050 -0.162 0.012 -0.041 -0.028 -0.073 0.1778908707 powell nthiter 4 286 0.050 -0.161 0.012 -0.041 -0.028 -0.073 0.1778905914 287 0.050 -0.160 0.012 -0.041 -0.028 -0.073 0.1778905628 297 0.050 -0.160 0.015 -0.041 -0.028 -0.073 0.1778905211 299 0.050 -0.160 0.014 -0.041 -0.028 -0.073 0.1778904886 307 0.050 -0.160 0.014 -0.040 -0.028 -0.073 0.1778903978 327 0.050 -0.160 0.014 -0.040 -0.028 -0.073 0.1778903853 330 0.050 -0.160 0.014 -0.040 -0.028 -0.073 0.1778903698 powell nthiter 5 343 0.050 -0.160 0.014 -0.040 -0.028 -0.074 0.1778902708 385 0.049 -0.160 0.014 -0.039 -0.028 -0.075 0.1778902584 387 0.050 -0.160 0.014 -0.039 -0.028 -0.075 0.1778902019 powell nthiter 6 442 0.049 -0.160 0.014 -0.039 -0.028 -0.075 0.1778901876 powell nthiter 7 Powell done niters = 7 Computing relative cost 0 -25.0 -25.0 -25.0 1.012656 1 -25.0 -25.0 25.0 1.010949 2 -25.0 25.0 -25.0 1.010052 3 -25.0 25.0 25.0 0.995599 4 25.0 -25.0 -25.0 1.005095 5 25.0 -25.0 25.0 1.018558 6 25.0 25.0 -25.0 0.999295 7 25.0 25.0 25.0 1.005249 REL: 8 0.177890 8.057452 1.007182 rel = 0.176622 Number of iterations 7 Min cost was 0.177890 Number of FunctionCalls 515 TolPowell 0.000000 nMaxItersPowell 36 OptimizationTime 77.598000 sec Parameters at optimum (transmm) 0.04907 -0.15957 0.01401 Parameters at optimum (rotdeg) -0.03893 -0.02795 -0.07505 Final costs ---------------- Number of surface hits 271549 WM Intensity 233.1620 +/- 65.3746 Ctx Intensity 314.7066 +/- 84.4015 Pct Contrast 29.1471 +/- 23.7305 Cost 0.1779 RelCost 0.1795 Reg at min cost was 0.999 0.039 0.010 -0.153; 0.006 -0.386 0.923 -32.016; 0.039 -0.922 -0.386 3.508; 0.000 0.000 0.000 1.000; Writing optimal reg to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anatorig2diff.bbr.dat, type = 14 Original Reg 0.999 0.039 0.008 -0.159; 0.007 -0.385 0.923 -31.859; 0.039 -0.922 -0.385 3.473; 0.000 0.000 0.000 1.000; Original Reg - Optimal Reg 0.000 0.000 -0.001 -0.006; 0.001 0.001 0.000 0.157; -0.000 -0.000 0.001 -0.036; 0.000 0.000 0.000 0.000; Computing change in lh position LH rmsDiffMean 0.128485 Computing change in rh position Surface RMS Diff (mm) 0.163953 0.265853 mri_segreg done tkregister2_cmdl --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anatorig2diff.bbr.dat --noedit --fslregout /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/diff2anatorig.bbr.mat tkregister_tcl /usr/local/freesurfer/dev/tktools/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz reg file /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anatorig2diff.bbr.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.126 2012/01/20 21:00:37 greve Exp $ Diagnostic Level -1 ---- Input registration matrix -------- 0.999 0.039 0.010 -0.153; 0.006 -0.386 0.923 -32.016; 0.039 -0.922 -0.386 3.508; 0.000 0.000 0.000 1.000; float2int = 0 --------------------------------------- INFO: loading target /space/freesurfer/subjects/diffusion_recons/elmo.2012/mri/orig.mgz Ttarg: -------------------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; INFO: loading movable /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz Tmov: -------------------- -2.000 0.000 0.000 128.000; 0.000 0.000 2.000 -64.000; 0.000 -2.000 0.000 128.000; 0.000 0.000 0.000 1.000; mkheaderreg = 0, float2int = 0 ---- Input registration matrix -------- 0.999 0.039 0.010 -0.153; 0.006 -0.386 0.923 -32.016; 0.039 -0.922 -0.386 3.508; 0.000 0.000 0.000 1.000; Determinant 1 subject = elmo.2012 RegMat --------------------------- 0.999 0.039 0.010 -0.153; 0.006 -0.386 0.923 -32.016; 0.039 -0.922 -0.386 3.508; 0.000 0.000 0.000 1.000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -8, ref det = -1 Cleaning up Started at Wed Apr 24 21:24:18 EDT 2013 Ended at Wed Apr 24 21:28:36 EDT 2013 BBR-Run-Time-Sec 258 bbregister Done To check results, run: tkregister2 --mov /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anatorig2diff.bbr.dat --surf convert_xfm -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anatorig2diff.bbr.mat -inverse /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/diff2anatorig.bbr.mat convert_xfm -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anat2diff.bbr.mat -concat /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anatorig2diff.bbr.mat /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anat2anatorig.mat convert_xfm -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/diff2anat.bbr.mat -inverse /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anat2diff.bbr.mat #------------------------------------- #@# Inter-subject registration Wed Apr 24 21:28:36 EDT 2013 flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/brain_anat.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/brain_anat_mni.nii.gz -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anat2mni.mat -cost mutualinfo convert_xfm -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/mni2anat.mat -inverse /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anat2mni.mat convert_xfm -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/diff2mni.bbr.mat -concat /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anat2mni.mat /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/diff2anat.bbr.mat convert_xfm -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/mni2diff.bbr.mat -inverse /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/diff2mni.bbr.mat convert_xfm -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anatorig2mni.mat -concat /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anat2mni.mat /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anatorig2anat.mat convert_xfm -omat /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/mni2anatorig.mat -inverse /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anatorig2mni.mat #------------------------------------- #@# Masks Wed Apr 24 21:32:22 EDT 2013 mri_binarize --i /space/freesurfer/subjects/diffusion_recons/elmo.2012/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/White-Matter.nii.gz $Id: mri_binarize.c,v 1.38 2012/12/06 22:26:29 greve Exp $ cwd /autofs/homes/010/ayendiki cmdline mri_binarize --i /space/freesurfer/subjects/diffusion_recons/elmo.2012/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/White-Matter.nii.gz sysname Linux hostname compute-0-3 machine x86_64 user ayendiki input /space/freesurfer/subjects/diffusion_recons/elmo.2012/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/White-Matter.nii.gz Binarizing based on matching values nMatch 5 0 2 1 7 2 41 3 46 4 77 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 470303 values in range Counting number of voxels in first frame Found 470303 voxels in final mask mri_binarize done mri_binarize --i /space/freesurfer/subjects/diffusion_recons/elmo.2012/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/White-Matter++.nii.gz $Id: mri_binarize.c,v 1.38 2012/12/06 22:26:29 greve Exp $ cwd /autofs/homes/010/ayendiki cmdline mri_binarize --i /space/freesurfer/subjects/diffusion_recons/elmo.2012/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/White-Matter++.nii.gz sysname Linux hostname compute-0-3 machine x86_64 user ayendiki input /space/freesurfer/subjects/diffusion_recons/elmo.2012/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/White-Matter++.nii.gz Binarizing based on matching values nMatch 8 0 2 1 7 2 41 3 46 4 77 5 28 6 60 7 16 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 503452 values in range Counting number of voxels in first frame Found 503452 voxels in final mask mri_binarize done mri_binarize --i /space/freesurfer/subjects/diffusion_recons/elmo.2012/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/notventricles.nii.gz $Id: mri_binarize.c,v 1.38 2012/12/06 22:26:29 greve Exp $ cwd /autofs/homes/010/ayendiki cmdline mri_binarize --i /space/freesurfer/subjects/diffusion_recons/elmo.2012/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/notventricles.nii.gz sysname Linux hostname compute-0-3 machine x86_64 user ayendiki input /space/freesurfer/subjects/diffusion_recons/elmo.2012/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/notventricles.nii.gz Binarizing based on matching values nMatch 2 0 4 1 43 binval 0 binvalnot 1 fstart = 0, fend = 0, nframes = 1 Found 21975 values in range Counting number of voxels in first frame Found 21975 voxels in final mask mri_binarize done mri_aparc2aseg --s elmo.2012 --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/aparc+aseg+2mm.nii.gz SUBJECTS_DIR /space/freesurfer/subjects/diffusion_recons subject elmo.2012 outvol /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/aparc+aseg+2mm.nii.gz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 2.000000 RipUnknown 0 Reading lh white surface /space/freesurfer/subjects/diffusion_recons/elmo.2012/surf/lh.white Reading lh pial surface /space/freesurfer/subjects/diffusion_recons/elmo.2012/surf/lh.pial Loading lh annotations from /space/freesurfer/subjects/diffusion_recons/elmo.2012/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /space/freesurfer/subjects/diffusion_recons/freesurfer/average/colortable_desikan_killiany.txt) Reading rh white surface /space/freesurfer/subjects/diffusion_recons/elmo.2012/surf/rh.white Reading rh pial surface /space/freesurfer/subjects/diffusion_recons/elmo.2012/surf/rh.pial Loading rh annotations from /space/freesurfer/subjects/diffusion_recons/elmo.2012/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /space/freesurfer/subjects/diffusion_recons/freesurfer/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /space/freesurfer/subjects/diffusion_recons/elmo.2012/mri/ribbon.mgz Loading filled from /space/freesurfer/subjects/diffusion_recons/elmo.2012/mri/filled.mgz Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /space/freesurfer/subjects/diffusion_recons/elmo.2012/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; ------------------------- Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 965340 Used brute-force search on 0 voxels Fixing Parahip LH WM Found 2 clusters 0 k 908.000000 1 k 2.000000 Fixing Parahip RH WM Found 3 clusters 0 k 1.000000 1 k 1.000000 2 k 691.000000 Writing output aseg to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/aparc+aseg+2mm.nii.gz mri_binarize --i /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/cortex.nii.gz $Id: mri_binarize.c,v 1.38 2012/12/06 22:26:29 greve Exp $ cwd /autofs/homes/010/ayendiki cmdline mri_binarize --i /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/cortex.nii.gz sysname Linux hostname compute-0-3 machine x86_64 user ayendiki input /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/cortex.nii.gz Binarizing based on threshold min 1000 max 2999 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 521022 values in range Counting number of voxels in first frame Found 521022 voxels in final mask mri_binarize done mri_binarize --i /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/cortex+2mm.nii.gz $Id: mri_binarize.c,v 1.38 2012/12/06 22:26:29 greve Exp $ cwd /autofs/homes/010/ayendiki cmdline mri_binarize --i /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/cortex+2mm.nii.gz sysname Linux hostname compute-0-3 machine x86_64 user ayendiki input /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/cortex+2mm.nii.gz Binarizing based on threshold min 1000 max 4999 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 795052 values in range Counting number of voxels in first frame Found 795052 voxels in final mask mri_binarize done mri_binarize --i /space/freesurfer/subjects/diffusion_recons/elmo.2012/mri/aparc+aseg.mgz --match 16 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/Brain-Stem.nii.gz $Id: mri_binarize.c,v 1.38 2012/12/06 22:26:29 greve Exp $ cwd /autofs/homes/010/ayendiki cmdline mri_binarize --i /space/freesurfer/subjects/diffusion_recons/elmo.2012/mri/aparc+aseg.mgz --match 16 --o /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/Brain-Stem.nii.gz sysname Linux hostname compute-0-3 machine x86_64 user ayendiki input /space/freesurfer/subjects/diffusion_recons/elmo.2012/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/Brain-Stem.nii.gz Binarizing based on matching values nMatch 1 0 16 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 23812 values in range Counting number of voxels in first frame Found 23812 voxels in final mask mri_binarize done fslmaths /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/cortex+2mm.nii.gz -add /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/Brain-Stem.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/cortex+2mm+bs.nii.gz mri_convert /space/freesurfer/subjects/diffusion_recons/elmo.2012/mri/brainmask.mgz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/anat_brain_mask.nii.gz mri_convert /space/freesurfer/subjects/diffusion_recons/elmo.2012/mri/brainmask.mgz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/anat_brain_mask.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_recons/elmo.2012/mri/brainmask.mgz... TR=2530.00, TE=1.74, TI=-1.00, flip angle=7.00 i_ras = (-1, -1.30385e-07, 8.9407e-08) j_ras = (1.08499e-07, 2.22353e-08, -1) k_ras = (-5.96046e-08, 1, -1.39989e-08) writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/anat_brain_mask.nii.gz... fslmaths /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/anat_brain_mask.nii.gz -mul /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/notventricles.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/anat_brain_mask-vent.nii.gz mri_convert /space/freesurfer/subjects/diffusion_recons/elmo.2012/mri/aparc+aseg.mgz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/aparc+aseg.nii.gz mri_convert /space/freesurfer/subjects/diffusion_recons/elmo.2012/mri/aparc+aseg.mgz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/aparc+aseg.nii.gz $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ reading from /space/freesurfer/subjects/diffusion_recons/elmo.2012/mri/aparc+aseg.mgz... TR=2530.00, TE=1.74, TI=-1.00, flip angle=7.00 i_ras = (-1, -1.30385e-07, 8.9407e-08) j_ras = (1.08499e-07, 2.22353e-08, -1) k_ras = (-5.96046e-08, 1, -1.39989e-08) writing to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/aparc+aseg.nii.gz... fslmaths /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/aparc+aseg.nii.gz -dilM -bin /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/aparc+aseg_mask.nii.gz flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/White-Matter.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/White-Matter.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/White-Matter.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/White-Matter.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/White-Matter.nii.gz flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/White-Matter.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/lowb.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/White-Matter.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/White-Matter.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/White-Matter.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/White-Matter++.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/White-Matter++.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/White-Matter++.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/White-Matter++.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/White-Matter++.nii.gz flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/White-Matter++.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/lowb.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/White-Matter++.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/White-Matter++.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/White-Matter++.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/notventricles.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/notventricles.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/notventricles.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/notventricles.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/notventricles.nii.gz flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/notventricles.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/lowb.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/notventricles.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/notventricles.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/notventricles.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/cortex.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/cortex.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/cortex.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/cortex.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/cortex.nii.gz flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/cortex.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/lowb.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/cortex.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/cortex.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/cortex.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/cortex+2mm.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/cortex+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/cortex+2mm.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/cortex+2mm.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/cortex+2mm.nii.gz flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/cortex+2mm.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/lowb.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/cortex+2mm.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/cortex+2mm.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/cortex+2mm.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/cortex+2mm+bs.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/cortex+2mm+bs.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/cortex+2mm+bs.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/cortex+2mm+bs.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/cortex+2mm+bs.nii.gz flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/cortex+2mm+bs.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/lowb.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/cortex+2mm+bs.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/cortex+2mm+bs.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/cortex+2mm+bs.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/aparc+aseg.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/aparc+aseg.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/aparc+aseg.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/aparc+aseg.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/aparc+aseg.nii.gz flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/aparc+aseg.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/lowb.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/aparc+aseg.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/aparc+aseg.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/aparc+aseg.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/aparc+aseg+2mm.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/aparc+aseg+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/aparc+aseg+2mm.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/aparc+aseg+2mm.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/aparc+aseg+2mm.nii.gz flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/lowb.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/aparc+aseg+2mm.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/aparc+aseg+2mm.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/aparc+aseg_mask.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/aparc+aseg_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/aparc+aseg_mask.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/aparc+aseg_mask.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/aparc+aseg_mask.nii.gz flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/aparc+aseg_mask.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/lowb.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/aparc+aseg_mask.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/aparc+aseg_mask.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/aparc+aseg_mask.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/anat_brain_mask.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/anat_brain_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/anat_brain_mask.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/anat_brain_mask.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/anat_brain_mask.nii.gz flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/anat_brain_mask.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/lowb.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/anat_brain_mask.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/anat_brain_mask.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/anat_brain_mask.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anat2mni.mat -interp nearestneighbour flip4fsl /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/anat_brain_mask-vent.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/anat_brain_mask-vent.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 fslswapdim /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/anat_brain_mask-vent.nii.gz x z -y /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/anat_brain_mask-vent.nii.gz fslorient -forceradiological /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/anat_brain_mask-vent.nii.gz flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/lowb.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/anat_brain_mask-vent.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/anat_brain_mask-vent.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/anat2mni.mat -interp nearestneighbour fslstats -t /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz -k /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/White-Matter++.bbr.nii.gz -m -s | awk '{print $1/$2}' > /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi_snr.txt flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lowb_brain_mask.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lowb_brain_mask.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/diff2mni.bbr.mat -interp nearestneighbour flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lowb_brain_mask.nii.gz -ref /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/brain_anat_orig.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/anatorig/lowb_brain_mask.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/diff2anatorig.bbr.mat -interp nearestneighbour ln -sf /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/aparc+aseg_mask.bbr.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/nodif_brain_mask.nii.gz #------------------------------------- #@# Tensor fit Wed Apr 24 21:40:22 EDT 2013 dtifit -k /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz -m /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/aparc+aseg_mask.bbr.nii.gz -r /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/bvecs -b /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/bvals -o /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit 0 128 0 128 0 64 0 slices processed 1 slices processed 2 slices processed 3 slices processed 4 slices processed 5 slices processed 6 slices processed 7 slices processed 8 slices processed 9 slices processed 10 slices processed 11 slices processed 12 slices processed 13 slices processed 14 slices processed 15 slices processed 16 slices processed 17 slices processed 18 slices processed 19 slices processed 20 slices processed 21 slices processed 22 slices processed 23 slices processed 24 slices processed 25 slices processed 26 slices processed 27 slices processed 28 slices processed 29 slices processed 30 slices processed 31 slices processed 32 slices processed 33 slices processed 34 slices processed 35 slices processed 36 slices processed 37 slices processed 38 slices processed 39 slices processed 40 slices processed 41 slices processed 42 slices processed 43 slices processed 44 slices processed 45 slices processed 46 slices processed 47 slices processed 48 slices processed 49 slices processed 50 slices processed 51 slices processed 52 slices processed 53 slices processed 54 slices processed 55 slices processed 56 slices processed 57 slices processed 58 slices processed 59 slices processed 60 slices processed 61 slices processed 62 slices processed 63 slices processed flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit_FA.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/mni/dtifit_FA.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/diff2mni.bbr.mat flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit_L1.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/mni/dtifit_L1.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/diff2mni.bbr.mat flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit_L2.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/mni/dtifit_L2.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/diff2mni.bbr.mat flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit_L3.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/mni/dtifit_L3.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/diff2mni.bbr.mat flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit_MD.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/mni/dtifit_MD.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/diff2mni.bbr.mat flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit_MO.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/mni/dtifit_MO.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/diff2mni.bbr.mat flirt -in /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit_S0.nii.gz -ref /usr/pubsw/packages/fsl/current/data/standard/MNI152_T1_1mm_brain.nii.gz -out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/mni/dtifit_S0.bbr.nii.gz -applyxfm -init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/diff2mni.bbr.mat #------------------------------------- #@# Priors Wed Apr 24 21:41:17 EDT 2013 /usr/local/freesurfer/dev/bin/dmri_train --outdir /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni --out lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr --slist /tmp/subj33.elmo.2012.18359.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/aparc+aseg_mask.nii.gz --fa /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit_FA.nii.gz --cptdir /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/mni2diff.bbr.mat --ncpts 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 --trunc cwd /autofs/homes/010/ayendiki cmdline /usr/local/freesurfer/dev/bin/dmri_train --outdir /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni --out lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr --slist /tmp/subj33.elmo.2012.18359.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/aparc+aseg_mask.nii.gz --fa /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit_FA.nii.gz --cptdir /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/mni2diff.bbr.mat --ncpts 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 --trunc sysname Linux hostname compute-0-3 machine x86_64 user ayendiki Output directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni Output directory in test subject's space: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff Output base: lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr Training subject directory list: /tmp/subj33.elmo.2012.18359.txt Location of streamline files relative to base: dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit_FA.nii.gz Affine registration from atlas to base for output subject: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/mni2diff.bbr.mat Number of control points for initial spline: 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 Exclude previously chosen center streamlines: 0 Use truncated streamlines: 1 Loading brain mask of output subject from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit_FA.nii.gz Loading affine registration from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/mni2diff.bbr.mat Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.cst_AS.bbr.trk INFO: Rejected 815 streamlines for straying off mask INFO: Rejected 69 streamlines for reversing direction INFO: Rejected 30 streamlines as length outliers INFO: Have 7518 total streamlines (min/mean/max length: 59/99/133) Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz Processing pathway 1 of 18... Matching streamline ends INFO: Have 4905 non-truncated streamlines (min/mean/max length: 59/99/134) INFO: Center of mass of start points: (98+/-3, 98+/-6, 38+/-12) INFO: Center of mass of midpoints: (111+/-3, 109+/-4, 78+/-7) INFO: Center of mass of end points: (112+/-7, 106+/-9, 141+/-6) INFO: Split streamlines into 27 segments Computing path histograms INFO: Total streamline volume is 37427 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 102 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0281392 INFO: Points where local peeks in curvature occur are 100 104 52 (curv = 0.0739372) 109 110 69 (curv = 0.0484531) 115 109 97 (curv = 0.0318118) 116 108 102 (curv = 0.0491033) 114 104 115 (curv = 0.0385678) 111 104 130 (curv = 0.0426496) INFO: Intermediate dominant points are 100 99 33 100 104 52 109 110 69 116 108 102 113 104 120 113 104 142 INFO: Final dominant points are 100 99 33 100 104 52 109 110 69 116 108 102 111 104 130 113 104 142 INFO: Selected control points are 100 99 33 100 105 52 109 110 70 115 108 102 111 103 129 113 104 142 INFO: Distances between consecutive points are 20 21 33 28 13 INFO: Selected control points in test subject's space are 69 56 6 69 59 15 73 62 23 76 61 38 75 59 50 76 59 57 INFO: Distances between consecutive points in test subject's space are 9 9 15 12 7 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Done in 112.054 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.cst_AS.bbr.trk INFO: Rejected 1532 streamlines for straying off mask INFO: Rejected 70 streamlines for reversing direction INFO: Rejected 31 streamlines as length outliers INFO: Have 7663 total streamlines (min/mean/max length: 58/98/141) Processing pathway 2 of 18... Matching streamline ends INFO: Have 4728 non-truncated streamlines (min/mean/max length: 58/98/141) INFO: Center of mass of start points: (82+/-3, 97+/-6, 41+/-14) INFO: Center of mass of midpoints: (68+/-4, 110+/-4, 79+/-8) INFO: Center of mass of end points: (69+/-8, 105+/-11, 141+/-7) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 43675 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 113 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.033597 INFO: Points where local peeks in curvature occur are 79 99 57 (curv = 0.0415372) 74 107 66 (curv = 0.0652505) 68 109 74 (curv = 0.0500638) 64 111 89 (curv = 0.0342488) 63 111 100 (curv = 0.0472298) 67 104 120 (curv = 0.0671901) 71 104 131 (curv = 0.0774299) INFO: Intermediate dominant points are 81 93 29 79 97 53 74 107 66 63 111 99 71 104 131 70 109 145 INFO: Final dominant points are 81 93 29 79 98 55 74 107 66 67 104 118 71 104 131 70 109 145 INFO: Selected control points are 81 93 29 80 96 55 70 109 68 64 107 117 71 103 131 70 109 145 INFO: Distances between consecutive points are 26 21 49 16 15 INFO: Selected control points in test subject's space are 60 53 4 60 55 16 55 61 22 52 60 45 56 58 52 55 61 58 INFO: Distances between consecutive points in test subject's space are 12 10 23 8 7 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Done in 118.202 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.ilf_AS.bbr.trk INFO: Rejected 104 streamlines for straying off mask INFO: Rejected 29 streamlines for reversing direction INFO: Rejected 22 streamlines as length outliers INFO: Have 3453 total streamlines (min/mean/max length: 53/90/135) Processing pathway 3 of 18... Matching streamline ends INFO: Have 1431 non-truncated streamlines (min/mean/max length: 53/97/135) INFO: Center of mass of start points: (134+/-8, 137+/-5, 41+/-9) INFO: Center of mass of midpoints: (133+/-4, 103+/-3, 59+/-5) INFO: Center of mass of end points: (115+/-13, 47+/-12, 71+/-13) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 37601 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 91 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.032025 INFO: Points where local peeks in curvature occur are 132 117 53 (curv = 0.060036) 134 109 56 (curv = 0.0410491) 135 95 59 (curv = 0.0780916) 126 76 69 (curv = 0.0630608) 120 60 69 (curv = 0.0507169) INFO: Intermediate dominant points are 136 136 36 132 117 53 135 95 59 126 76 69 109 48 69 INFO: Final dominant points are 136 136 36 132 117 53 135 95 59 126 76 69 109 48 69 INFO: Selected control points are 136 136 36 132 117 54 134 95 59 127 76 68 109 48 69 INFO: Distances between consecutive points are 26 23 22 33 INFO: Selected control points in test subject's space are 86 74 6 84 65 15 85 55 18 82 46 22 74 32 23 INFO: Distances between consecutive points in test subject's space are 13 10 10 16 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 27.638 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.ilf_AS.bbr.trk INFO: Rejected 17 streamlines for straying off mask INFO: Rejected 18 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 2124 total streamlines (min/mean/max length: 52/91/129) Processing pathway 4 of 18... Matching streamline ends INFO: Have 1034 non-truncated streamlines (min/mean/max length: 57/99/124) INFO: Center of mass of start points: (46+/-8, 140+/-5, 42+/-9) INFO: Center of mass of midpoints: (47+/-3, 106+/-2, 57+/-4) INFO: Center of mass of end points: (65+/-11, 46+/-11, 74+/-12) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 28249 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 104 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0369794 INFO: Points where local peeks in curvature occur are 46 119 49 (curv = 0.0524572) 48 113 55 (curv = 0.0452764) 48 107 58 (curv = 0.0640623) 47 94 61 (curv = 0.0696708) 59 69 74 (curv = 0.0434269) INFO: Intermediate dominant points are 42 137 39 46 119 49 47 94 61 59 69 74 70 42 62 INFO: Final dominant points are 42 137 39 46 119 49 47 94 61 59 69 74 70 42 62 WARN: Defaulting to equidistant control points INFO: Selected control points are 42 137 39 48 113 55 49 87 65 62 61 75 70 42 62 INFO: Distances between consecutive points are 29 28 31 24 INFO: Selected control points in test subject's space are 41 74 9 45 63 17 45 50 21 52 38 26 55 29 20 INFO: Distances between consecutive points in test subject's space are 14 14 15 11 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 103 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0317225 INFO: Points where local peeks in curvature occur are 46 118 50 (curv = 0.0388051) 48 111 56 (curv = 0.0555527) 48 104 60 (curv = 0.0505194) 47 97 60 (curv = 0.0628071) 60 66 75 (curv = 0.0333833) INFO: Intermediate dominant points are 41 137 39 46 118 50 47 97 60 60 66 75 71 41 64 INFO: Final dominant points are 41 137 39 46 118 50 47 97 60 60 66 75 71 41 64 WARN: Defaulting to equidistant control points INFO: Selected control points are 41 137 39 48 112 56 49 87 66 61 63 75 71 41 64 INFO: Distances between consecutive points are 31 27 28 27 INFO: Selected control points in test subject's space are 41 74 9 45 62 17 45 50 22 51 39 26 56 29 21 INFO: Distances between consecutive points in test subject's space are 15 13 13 12 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 103 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0323469 INFO: Points where local peeks in curvature occur are 49 130 44 (curv = 0.0612801) 48 126 50 (curv = 0.0393571) 48 113 58 (curv = 0.0660797) 44 97 61 (curv = 0.0718496) 45 90 63 (curv = 0.0473725) 56 74 73 (curv = 0.0609765) 60 64 74 (curv = 0.0331985) INFO: Intermediate dominant points are 48 145 41 49 130 44 44 97 61 56 74 73 76 42 76 INFO: Final dominant points are 48 145 41 49 130 44 44 97 61 56 74 73 76 42 76 WARN: Defaulting to equidistant control points INFO: Selected control points are 48 145 41 48 123 52 44 97 61 57 71 73 76 42 76 INFO: Distances between consecutive points are 25 28 31 35 INFO: Selected control points in test subject's space are 44 78 10 44 68 15 43 55 20 49 43 25 58 29 27 INFO: Distances between consecutive points in test subject's space are 11 14 14 17 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 103 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0330161 INFO: Points where local peeks in curvature occur are 48 130 43 (curv = 0.0477155) 47 123 49 (curv = 0.0487921) 45 116 52 (curv = 0.0594563) 46 109 56 (curv = 0.052095) 45 104 58 (curv = 0.0485911) 49 84 64 (curv = 0.0452784) 56 75 72 (curv = 0.0471211) INFO: Intermediate dominant points are 47 145 41 45 116 52 46 96 60 56 75 72 74 43 79 INFO: Final dominant points are 47 145 41 45 116 52 47 89 63 56 75 72 74 43 79 WARN: Defaulting to equidistant control points INFO: Selected control points are 47 145 41 47 122 50 46 97 60 58 71 73 74 43 79 INFO: Distances between consecutive points are 25 27 31 33 INFO: Selected control points in test subject's space are 44 78 10 44 67 14 44 55 19 50 43 25 57 30 28 INFO: Distances between consecutive points in test subject's space are 12 13 15 15 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 99 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0297754 INFO: Points where local peeks in curvature occur are 48 130 43 (curv = 0.0481203) 47 123 49 (curv = 0.0496145) 45 116 52 (curv = 0.0553555) 46 109 56 (curv = 0.0439455) 47 88 63 (curv = 0.0344062) 56 73 72 (curv = 0.0399798) 59 66 73 (curv = 0.0363352) INFO: Intermediate dominant points are 47 145 41 45 116 52 45 98 59 56 73 72 75 46 75 INFO: Final dominant points are 47 145 41 45 116 52 47 88 63 56 73 72 75 46 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 47 145 41 47 123 49 45 99 59 56 73 72 75 46 75 INFO: Distances between consecutive points are 23 26 31 33 INFO: Selected control points in test subject's space are 44 78 10 44 68 14 43 56 19 49 44 25 58 31 26 INFO: Distances between consecutive points in test subject's space are 11 13 15 16 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 104 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.032913 INFO: Points where local peeks in curvature occur are 49 131 44 (curv = 0.0580746) 48 114 58 (curv = 0.0639599) 44 97 61 (curv = 0.0728882) 46 88 64 (curv = 0.0464374) 56 74 73 (curv = 0.0419059) 59 67 73 (curv = 0.0474898) 66 58 74 (curv = 0.042791) INFO: Intermediate dominant points are 48 145 41 49 131 44 44 97 61 59 67 73 76 42 76 INFO: Final dominant points are 48 145 41 49 131 44 44 97 61 59 67 73 76 42 76 WARN: Defaulting to equidistant control points INFO: Selected control points are 48 145 41 48 123 52 44 97 61 58 70 73 76 42 76 INFO: Distances between consecutive points are 25 28 33 33 INFO: Selected control points in test subject's space are 44 78 10 44 68 15 43 55 20 50 42 25 58 29 27 INFO: Distances between consecutive points in test subject's space are 11 14 16 15 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 99 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0330215 INFO: Points where local peeks in curvature occur are 47 130 47 (curv = 0.0693609) 49 116 57 (curv = 0.0845046) 48 109 57 (curv = 0.040301) 47 102 59 (curv = 0.0437753) 48 88 65 (curv = 0.053778) 57 67 72 (curv = 0.0353276) INFO: Intermediate dominant points are 41 145 49 49 116 57 48 88 65 57 67 72 61 50 72 INFO: Final dominant points are 41 145 49 49 116 57 48 88 65 57 67 72 61 50 72 WARN: Defaulting to equidistant control points INFO: Selected control points are 41 145 49 48 122 53 47 99 60 54 76 70 61 50 72 INFO: Distances between consecutive points are 24 24 26 27 INFO: Selected control points in test subject's space are 41 78 14 44 67 16 44 56 19 48 45 24 51 33 25 INFO: Distances between consecutive points in test subject's space are 12 11 13 12 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 97 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0267388 INFO: Points where local peeks in curvature occur are 47 129 47 (curv = 0.0624221) 49 118 56 (curv = 0.0769472) 48 106 59 (curv = 0.0335264) 48 89 65 (curv = 0.0476719) 55 73 71 (curv = 0.0312977) INFO: Intermediate dominant points are 40 145 49 49 118 56 48 89 65 55 73 71 63 51 72 INFO: Final dominant points are 40 145 49 49 118 56 48 89 65 55 73 71 63 51 72 INFO: Selected control points are 40 145 49 49 117 54 48 90 66 55 73 71 63 51 72 INFO: Distances between consecutive points are 30 30 19 23 INFO: Selected control points in test subject's space are 41 78 14 45 65 16 45 52 22 48 44 24 52 33 25 INFO: Distances between consecutive points in test subject's space are 14 14 9 12 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 23.179 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.unc_AS.bbr.trk INFO: Rejected 144 streamlines for straying off mask INFO: Rejected 28 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 5122 total streamlines (min/mean/max length: 8/57/104) Processing pathway 5 of 18... Matching streamline ends INFO: Have 3750 non-truncated streamlines (min/mean/max length: 8/57/102) INFO: Center of mass of start points: (128+/-7, 144+/-4, 41+/-5) INFO: Center of mass of midpoints: (125+/-2, 126+/-2, 55+/-3) INFO: Center of mass of end points: (113+/-11, 153+/-16, 58+/-5) INFO: Split streamlines into 10 segments Computing path histograms INFO: Total streamline volume is 22506 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 73 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0743769 INFO: Points where local peeks in curvature occur are 127 125 54 (curv = 0.141118) 123 134 61 (curv = 0.109608) 109 149 59 (curv = 0.107108) INFO: Intermediate dominant points are 125 145 40 127 125 54 122 135 61 109 149 59 113 168 56 INFO: Final dominant points are 125 145 40 127 125 54 116 140 58 109 149 59 113 168 56 WARN: Defaulting to equidistant control points INFO: Selected control points are 125 145 40 129 128 47 122 135 61 108 152 58 113 168 56 INFO: Distances between consecutive points are 19 17 22 17 INFO: Selected control points in test subject's space are 80 78 8 82 70 12 79 74 18 72 82 17 75 89 16 INFO: Distances between consecutive points in test subject's space are 9 8 11 8 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 68 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0689837 INFO: Points where local peeks in curvature occur are 126 124 54 (curv = 0.148395) 124 130 60 (curv = 0.100467) 109 153 61 (curv = 0.0751884) INFO: Intermediate dominant points are 125 145 40 126 124 54 123 133 61 109 153 61 107 166 56 INFO: Final dominant points are 125 145 40 126 124 54 114 144 59 109 153 61 107 166 56 INFO: Selected control points are 125 145 40 128 125 53 115 144 61 109 152 60 107 166 56 INFO: Distances between consecutive points are 24 24 10 15 INFO: Selected control points in test subject's space are 80 78 8 82 69 15 76 78 18 73 82 18 72 88 16 INFO: Distances between consecutive points in test subject's space are 12 11 5 6 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 33.171 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.unc_AS.bbr.trk INFO: Rejected 462 streamlines for straying off mask INFO: Rejected 112 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 6347 total streamlines (min/mean/max length: 8/62/107) Processing pathway 6 of 18... Matching streamline ends INFO: Have 4907 non-truncated streamlines (min/mean/max length: 8/61/107) INFO: Center of mass of start points: (53+/-6, 145+/-4, 41+/-5) INFO: Center of mass of midpoints: (55+/-2, 127+/-3, 55+/-3) INFO: Center of mass of end points: (71+/-9, 161+/-16, 57+/-5) INFO: Split streamlines into 11 segments Computing path histograms INFO: Total streamline volume is 23820 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 73 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0661128 INFO: Points where local peeks in curvature occur are 52 135 43 (curv = 0.0687635) 55 128 53 (curv = 0.157154) 72 152 62 (curv = 0.0876863) 74 160 57 (curv = 0.0667884) INFO: Intermediate dominant points are 50 147 42 55 128 53 62 138 60 72 152 62 76 176 55 INFO: Final dominant points are 50 147 42 55 128 53 66 142 60 72 152 62 76 176 55 INFO: Selected control points are 50 147 42 55 127 52 65 142 61 73 152 60 76 176 55 INFO: Distances between consecutive points are 23 20 13 25 INFO: Selected control points in test subject's space are 45 79 10 48 69 15 52 77 19 56 82 18 57 93 16 INFO: Distances between consecutive points in test subject's space are 12 10 6 11 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 47.572 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/fmajor_PP.bbr.trk INFO: Rejected 1460 streamlines for straying off mask INFO: Rejected 232 streamlines for reversing direction INFO: Rejected 126 streamlines as length outliers INFO: Have 7957 total streamlines (min/mean/max length: 87/132/159) Processing pathway 7 of 18... Matching streamline ends INFO: Have 5990 non-truncated streamlines (min/mean/max length: 87/133/161) INFO: Center of mass of start points: (103+/-7, 38+/-9, 99+/-16) INFO: Center of mass of midpoints: (90+/-3, 90+/-3, 84+/-3) INFO: Center of mass of end points: (74+/-6, 39+/-9, 99+/-17) INFO: Split streamlines into 35 segments Computing path histograms INFO: Total streamline volume is 64262 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0507736 INFO: Points where local peeks in curvature occur are 106 44 88 (curv = 0.0892097) 116 54 86 (curv = 0.0993473) 116 61 86 (curv = 0.0644371) 91 91 84 (curv = 0.0919606) 84 90 85 (curv = 0.0526852) 61 59 86 (curv = 0.103342) 69 47 90 (curv = 0.0847521) INFO: Intermediate dominant points are 99 39 109 116 54 86 112 70 86 91 91 84 68 77 86 61 59 86 72 39 108 INFO: Final dominant points are 99 39 109 116 54 86 104 83 85 91 91 84 65 72 87 61 59 86 72 39 108 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 109 107 45 86 112 69 86 93 90 84 70 79 86 63 55 86 72 39 108 INFO: Distances between consecutive points are 25 25 28 26 25 29 INFO: Selected control points in test subject's space are 69 28 42 73 31 31 75 42 31 66 52 30 55 47 31 52 35 31 57 28 42 INFO: Distances between consecutive points in test subject's space are 12 11 13 12 12 14 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.049653 INFO: Points where local peeks in curvature occur are 106 43 88 (curv = 0.0821836) 116 55 86 (curv = 0.129402) 95 90 84 (curv = 0.0613024) 88 91 84 (curv = 0.0869874) 61 60 86 (curv = 0.0762985) 65 52 86 (curv = 0.0869518) INFO: Intermediate dominant points are 99 39 109 116 55 86 111 71 86 88 91 84 68 76 87 65 52 86 72 39 108 INFO: Final dominant points are 99 39 109 116 55 86 101 86 85 88 91 84 62 65 87 65 52 86 72 39 108 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 109 108 45 86 112 69 86 95 90 84 70 79 86 63 55 86 72 39 108 INFO: Distances between consecutive points are 25 24 27 27 25 29 INFO: Selected control points in test subject's space are 69 28 42 73 31 31 75 42 31 67 52 30 55 47 31 52 35 31 57 28 42 INFO: Distances between consecutive points in test subject's space are 12 11 13 13 12 14 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0514166 INFO: Points where local peeks in curvature occur are 107 44 88 (curv = 0.0843619) 117 56 86 (curv = 0.137763) 89 91 85 (curv = 0.0854668) 61 63 87 (curv = 0.0904317) 63 54 86 (curv = 0.0804745) INFO: Intermediate dominant points are 99 39 109 117 56 86 112 70 87 89 91 85 69 77 87 61 63 87 72 40 107 INFO: Final dominant points are 99 39 109 117 56 86 102 85 86 89 91 85 67 75 87 61 63 87 72 40 107 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 109 108 45 87 112 69 87 95 90 84 71 79 86 62 55 86 72 40 107 INFO: Distances between consecutive points are 25 24 27 26 26 28 INFO: Selected control points in test subject's space are 69 28 42 73 31 31 75 42 31 67 52 30 56 47 31 52 35 31 57 28 41 INFO: Distances between consecutive points in test subject's space are 12 11 13 12 13 13 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 141 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0497633 INFO: Points where local peeks in curvature occur are 107 44 86 (curv = 0.105289) 116 54 86 (curv = 0.0947602) 101 87 85 (curv = 0.0532037) 91 91 84 (curv = 0.0912266) 84 90 85 (curv = 0.0582558) 61 59 86 (curv = 0.103901) 64 52 86 (curv = 0.076793) INFO: Intermediate dominant points are 99 38 108 107 44 86 112 71 87 91 91 84 68 76 87 61 59 86 72 39 108 INFO: Final dominant points are 99 38 108 107 44 86 104 84 86 91 91 84 65 72 87 61 59 86 72 39 108 WARN: Defaulting to equidistant dominant points INFO: Selected control points are 99 38 108 110 46 86 114 70 87 92 91 84 67 77 87 64 52 86 72 39 108 INFO: Distances between consecutive points are 26 24 31 29 25 27 INFO: Selected control points in test subject's space are 69 27 41 74 31 31 76 43 31 65 53 30 54 46 32 53 34 31 57 28 42 INFO: Distances between consecutive points in test subject's space are 12 12 15 13 12 13 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_cpts_7.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.nii.gz Done in 155.166 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/fminor_PP.bbr.trk INFO: Rejected 1220 streamlines for straying off mask INFO: Rejected 284 streamlines for reversing direction INFO: Rejected 59 streamlines as length outliers INFO: Have 26064 total streamlines (min/mean/max length: 49/91/120) Processing pathway 8 of 18... Matching streamline ends INFO: Have 17809 non-truncated streamlines (min/mean/max length: 52/90/122) INFO: Center of mass of start points: (103+/-5, 187+/-6, 75+/-12) INFO: Center of mass of midpoints: (90+/-2, 150+/-4, 76+/-3) INFO: Center of mass of end points: (78+/-5, 188+/-7, 76+/-12) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 68278 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 100 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0576977 INFO: Points where local peeks in curvature occur are 108 177 73 (curv = 0.0673171) 109 171 74 (curv = 0.0745523) 105 159 73 (curv = 0.0660246) 102 156 74 (curv = 0.0711383) 88 151 75 (curv = 0.0773312) 77 155 74 (curv = 0.0672784) 71 167 70 (curv = 0.126083) INFO: Intermediate dominant points are 106 193 74 109 171 74 102 156 74 71 167 70 78 194 86 INFO: Final dominant points are 106 193 74 109 171 74 102 156 74 71 167 70 78 194 86 WARN: Defaulting to equidistant control points INFO: Selected control points are 106 193 74 109 169 74 90 151 76 71 167 70 78 194 86 INFO: Distances between consecutive points are 24 26 26 32 INFO: Selected control points in test subject's space are 71 101 24 73 90 24 64 81 26 55 89 23 58 102 30 INFO: Distances between consecutive points in test subject's space are 11 13 12 15 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 99 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0558321 INFO: Points where local peeks in curvature occur are 109 169 73 (curv = 0.0619395) 102 156 74 (curv = 0.0664315) 88 151 75 (curv = 0.0916227) 77 155 74 (curv = 0.0672784) 71 168 70 (curv = 0.129483) INFO: Intermediate dominant points are 105 193 74 102 156 74 88 151 75 71 168 70 77 194 86 INFO: Final dominant points are 105 193 74 102 156 74 77 155 74 71 168 70 77 194 86 INFO: Selected control points are 105 193 74 104 156 74 76 155 75 73 169 69 77 194 86 INFO: Distances between consecutive points are 37 28 16 30 INFO: Selected control points in test subject's space are 71 101 24 71 84 24 58 83 25 56 90 22 58 102 30 INFO: Distances between consecutive points in test subject's space are 17 13 8 15 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 1023.52 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.atr_PP.bbr.trk INFO: Rejected 209 streamlines for straying off mask INFO: Rejected 6 streamlines for reversing direction INFO: Rejected 52 streamlines as length outliers INFO: Have 13312 total streamlines (min/mean/max length: 30/61/94) Processing pathway 9 of 18... Matching streamline ends INFO: Have 4846 non-truncated streamlines (min/mean/max length: 37/69/92) INFO: Center of mass of start points: (116+/-12, 180+/-10, 75+/-13) INFO: Center of mass of midpoints: (106+/-3, 134+/-2, 80+/-6) INFO: Center of mass of end points: (97+/-2, 114+/-3, 78+/-6) INFO: Split streamlines into 17 segments Computing path histograms INFO: Total streamline volume is 43593 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 69 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0492409 INFO: Points where local peeks in curvature occur are 110 177 72 (curv = 0.092235) 114 169 75 (curv = 0.141218) 111 159 74 (curv = 0.054827) 110 142 79 (curv = 0.0746263) INFO: Intermediate dominant points are 107 186 78 114 169 75 111 152 77 110 142 79 98 116 78 INFO: Final dominant points are 107 186 78 114 169 75 111 152 77 110 142 79 98 116 78 INFO: Selected control points are 107 186 78 113 169 73 111 152 77 109 142 78 98 116 78 INFO: Distances between consecutive points are 19 18 10 28 INFO: Selected control points in test subject's space are 72 98 26 75 90 24 74 82 26 73 77 26 68 65 27 INFO: Distances between consecutive points in test subject's space are 9 8 5 13 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 220.63 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.atr_PP.bbr.trk INFO: Rejected 167 streamlines for straying off mask INFO: Rejected 18 streamlines for reversing direction INFO: Rejected 39 streamlines as length outliers INFO: Have 11788 total streamlines (min/mean/max length: 31/64/93) Processing pathway 10 of 18... Matching streamline ends INFO: Have 4830 non-truncated streamlines (min/mean/max length: 41/71/93) INFO: Center of mass of start points: (67+/-9, 185+/-10, 81+/-12) INFO: Center of mass of midpoints: (73+/-3, 135+/-2, 81+/-5) INFO: Center of mass of end points: (82+/-2, 114+/-3, 78+/-6) INFO: Split streamlines into 18 segments Computing path histograms INFO: Total streamline volume is 39463 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 75 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0475231 INFO: Points where local peeks in curvature occur are 67 166 78 (curv = 0.139403) 69 145 80 (curv = 0.0592232) 79 125 78 (curv = 0.08025) INFO: Intermediate dominant points are 69 191 80 67 166 78 69 145 80 79 125 78 82 114 80 INFO: Final dominant points are 69 191 80 67 166 78 69 145 80 79 125 78 82 114 80 INFO: Selected control points are 69 191 80 69 165 80 69 145 80 78 126 79 82 114 80 INFO: Distances between consecutive points are 26 20 21 13 INFO: Selected control points in test subject's space are 54 100 27 54 88 28 54 78 28 59 69 27 61 64 28 INFO: Distances between consecutive points in test subject's space are 12 10 10 5 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 152.551 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.ccg_PP.bbr.trk INFO: Rejected 23 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Rejected 1 streamlines as length outliers INFO: Have 5254 total streamlines (min/mean/max length: 25/68/134) Processing pathway 11 of 18... Matching streamline ends INFO: Have 1447 non-truncated streamlines (min/mean/max length: 55/86/134) INFO: Center of mass of start points: (99+/-4, 80+/-7, 103+/-7) INFO: Center of mass of midpoints: (96+/-2, 124+/-2, 105+/-2) INFO: Center of mass of end points: (97+/-5, 163+/-7, 85+/-8) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 20019 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 94 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0238637 INFO: Points where local peeks in curvature occur are 100 90 103 (curv = 0.0265804) 96 102 105 (curv = 0.0496757) 96 110 106 (curv = 0.0255031) 97 117 107 (curv = 0.0434525) 97 129 105 (curv = 0.0359116) 97 144 99 (curv = 0.0303995) 96 150 95 (curv = 0.0341667) INFO: Intermediate dominant points are 101 74 96 96 102 105 97 129 105 96 150 95 97 164 78 INFO: Final dominant points are 101 74 96 96 102 105 97 129 105 96 150 95 97 164 78 INFO: Selected control points are 101 74 96 97 103 106 97 128 105 97 150 96 97 164 78 INFO: Distances between consecutive points are 31 25 24 23 INFO: Selected control points in test subject's space are 70 45 35 68 58 40 68 70 39 68 81 35 67 87 26 INFO: Distances between consecutive points in test subject's space are 14 12 12 11 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 38.409 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.ccg_PP.bbr.trk INFO: Rejected 92 streamlines for straying off mask INFO: Rejected 8 streamlines for reversing direction INFO: Rejected 43 streamlines as length outliers INFO: Have 4279 total streamlines (min/mean/max length: 30/65/116) Processing pathway 12 of 18... Matching streamline ends INFO: Have 902 non-truncated streamlines (min/mean/max length: 56/83/119) INFO: Center of mass of start points: (81+/-4, 81+/-8, 100+/-9) INFO: Center of mass of midpoints: (83+/-1, 125+/-2, 106+/-2) INFO: Center of mass of end points: (83+/-4, 159+/-6, 89+/-8) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 18744 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0230908 INFO: Points where local peeks in curvature occur are 80 91 104 (curv = 0.0447291) 81 106 107 (curv = 0.0271521) 82 117 107 (curv = 0.0414315) 82 132 103 (curv = 0.0282386) 83 139 99 (curv = 0.0296175) INFO: Intermediate dominant points are 81 77 93 80 91 104 82 117 107 83 139 99 87 156 90 INFO: Final dominant points are 81 77 93 80 91 104 82 117 107 83 139 99 87 156 90 INFO: Selected control points are 81 77 93 80 92 105 82 117 107 82 138 99 87 156 90 INFO: Distances between consecutive points are 19 25 22 21 INFO: Selected control points in test subject's space are 60 46 34 60 53 40 61 65 40 61 75 36 63 84 32 INFO: Distances between consecutive points in test subject's space are 9 12 11 10 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 27.111 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.cab_PP.bbr.trk INFO: Rejected 41 streamlines for straying off mask INFO: Rejected 63 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 4157 total streamlines (min/mean/max length: 2/45/95) Processing pathway 13 of 18... Matching streamline ends INFO: Have 1332 non-truncated streamlines (min/mean/max length: 17/53/89) INFO: Center of mass of start points: (109+/-6, 81+/-12, 75+/-13) INFO: Center of mass of midpoints: (111+/-2, 99+/-4, 58+/-5) INFO: Center of mass of end points: (115+/-5, 122+/-13, 42+/-11) INFO: Split streamlines into 12 segments Computing path histograms INFO: Total streamline volume is 17904 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 58 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0243762 INFO: Points where local peeks in curvature occur are 116 113 45 (curv = 0.0532996) INFO: Intermediate dominant points are 105 80 76 110 97 60 116 113 45 116 132 33 INFO: Final dominant points are 105 80 76 113 104 53 116 113 45 116 132 33 WARN: Defaulting to equidistant control points INFO: Selected control points are 105 80 76 110 97 60 116 114 44 116 132 33 INFO: Distances between consecutive points are 24 24 21 INFO: Selected control points in test subject's space are 72 47 26 74 55 18 76 64 11 76 72 5 INFO: Distances between consecutive points in test subject's space are 11 12 10 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 56 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0249391 INFO: Points where local peeks in curvature occur are 107 91 67 (curv = 0.0410954) 116 116 43 (curv = 0.049922) INFO: Intermediate dominant points are 107 80 75 107 91 67 116 116 43 117 131 33 INFO: Final dominant points are 107 80 75 107 91 67 116 116 43 117 131 33 WARN: Defaulting to equidistant control points INFO: Selected control points are 107 80 75 109 97 61 116 114 44 117 131 33 INFO: Distances between consecutive points are 22 25 20 INFO: Selected control points in test subject's space are 73 47 25 73 55 19 76 64 11 77 72 5 INFO: Distances between consecutive points in test subject's space are 10 12 10 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 58 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0275492 INFO: Points where local peeks in curvature occur are 107 91 67 (curv = 0.0408923) 109 98 61 (curv = 0.0283712) 113 109 47 (curv = 0.0376695) 116 118 42 (curv = 0.0559133) INFO: Intermediate dominant points are 107 80 75 107 91 67 116 118 42 117 130 33 INFO: Final dominant points are 107 80 75 107 91 67 116 118 42 117 130 33 WARN: Defaulting to equidistant control points INFO: Selected control points are 107 80 75 109 98 61 115 114 44 117 130 33 INFO: Distances between consecutive points are 23 24 20 INFO: Selected control points in test subject's space are 73 47 25 73 56 19 76 64 11 77 71 5 INFO: Distances between consecutive points in test subject's space are 11 12 9 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 57 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.02502 INFO: Points where local peeks in curvature occur are 108 90 67 (curv = 0.0360269) 114 110 47 (curv = 0.0408157) 116 118 42 (curv = 0.0600972) INFO: Intermediate dominant points are 108 80 75 111 99 60 116 118 42 117 130 33 INFO: Final dominant points are 108 80 75 113 109 49 116 118 42 117 130 33 WARN: Defaulting to equidistant control points INFO: Selected control points are 108 80 75 110 98 61 114 113 45 117 130 33 INFO: Distances between consecutive points are 23 22 21 INFO: Selected control points in test subject's space are 73 47 25 74 56 19 75 63 11 77 71 5 INFO: Distances between consecutive points in test subject's space are 11 11 10 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 62 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0427659 INFO: Points where local peeks in curvature occur are 116 106 46 (curv = 0.0649199) 119 119 44 (curv = 0.0858006) INFO: Intermediate dominant points are 104 82 76 116 106 46 119 119 44 114 127 32 INFO: Final dominant points are 104 82 76 116 106 46 119 119 44 114 127 32 WARN: Defaulting to equidistant control points INFO: Selected control points are 104 82 76 111 96 58 119 115 44 114 127 32 INFO: Distances between consecutive points are 24 25 18 INFO: Selected control points in test subject's space are 71 48 26 74 55 17 78 64 11 75 70 5 INFO: Distances between consecutive points in test subject's space are 12 12 9 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 50 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0254225 INFO: Points where local peeks in curvature occur are 108 94 63 (curv = 0.0581688) 110 103 54 (curv = 0.0334532) 114 115 45 (curv = 0.0483893) INFO: Intermediate dominant points are 107 80 77 108 94 63 114 115 45 116 127 41 INFO: Final dominant points are 107 80 77 108 94 63 114 115 45 116 127 41 WARN: Defaulting to equidistant control points INFO: Selected control points are 107 80 77 108 94 63 113 109 50 116 127 41 INFO: Distances between consecutive points are 20 20 20 INFO: Selected control points in test subject's space are 73 47 26 73 54 20 75 61 13 76 70 9 INFO: Distances between consecutive points in test subject's space are 9 10 10 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 54 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0290931 INFO: Points where local peeks in curvature occur are 108 95 62 (curv = 0.0480015) 114 114 45 (curv = 0.0493715) INFO: Intermediate dominant points are 107 80 77 108 95 62 114 114 45 116 126 41 INFO: Final dominant points are 107 80 77 108 95 62 114 114 45 116 126 41 WARN: Defaulting to equidistant control points INFO: Selected control points are 107 80 77 108 92 64 112 108 51 116 126 41 INFO: Distances between consecutive points are 18 21 21 INFO: Selected control points in test subject's space are 73 47 26 73 53 20 75 61 14 76 69 9 INFO: Distances between consecutive points in test subject's space are 8 10 9 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 61 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0241761 INFO: Points where local peeks in curvature occur are 105 88 66 (curv = 0.0598608) 113 108 45 (curv = 0.0407339) 115 115 42 (curv = 0.0557064) 117 123 41 (curv = 0.0367221) INFO: Intermediate dominant points are 106 77 75 105 88 66 115 115 42 117 133 38 INFO: Final dominant points are 106 77 75 105 88 66 115 115 42 117 133 38 WARN: Defaulting to equidistant control points INFO: Selected control points are 106 77 75 108 96 57 115 114 43 117 133 38 INFO: Distances between consecutive points are 26 24 20 INFO: Selected control points in test subject's space are 72 46 26 73 55 17 76 64 10 77 73 8 INFO: Distances between consecutive points in test subject's space are 13 12 9 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 55 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0311761 INFO: Points where local peeks in curvature occur are 114 106 48 (curv = 0.0362027) 117 112 42 (curv = 0.0445731) 118 120 39 (curv = 0.0660946) INFO: Intermediate dominant points are 106 85 75 112 100 57 118 120 39 112 132 33 INFO: Final dominant points are 106 85 75 117 111 43 118 120 39 112 132 33 WARN: Defaulting to equidistant control points INFO: Selected control points are 106 85 75 112 100 57 117 115 41 112 132 33 INFO: Distances between consecutive points are 24 22 19 INFO: Selected control points in test subject's space are 72 50 25 75 57 17 77 64 9 74 72 5 INFO: Distances between consecutive points in test subject's space are 11 11 9 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 53 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0416393 INFO: Points where local peeks in curvature occur are 115 114 42 (curv = 0.0953841) INFO: Intermediate dominant points are 105 86 75 112 98 57 115 114 42 115 126 34 INFO: Final dominant points are 105 86 75 113 104 50 115 114 42 115 126 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 105 86 75 112 97 58 114 113 42 115 126 34 INFO: Distances between consecutive points are 21 23 15 INFO: Selected control points in test subject's space are 72 50 25 75 55 17 75 63 10 76 69 6 INFO: Distances between consecutive points in test subject's space are 10 11 7 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 49 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0298169 INFO: Points where local peeks in curvature occur are 115 109 44 (curv = 0.0620953) 114 118 39 (curv = 0.0635284) INFO: Intermediate dominant points are 108 83 73 111 98 57 114 118 39 115 127 38 INFO: Final dominant points are 108 83 73 115 110 43 114 118 39 115 127 38 WARN: Defaulting to equidistant control points INFO: Selected control points are 108 83 73 111 98 57 115 111 42 115 127 38 INFO: Distances between consecutive points are 22 20 16 INFO: Selected control points in test subject's space are 73 49 24 74 56 17 76 62 10 76 70 8 INFO: Distances between consecutive points in test subject's space are 10 9 8 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 55 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0222445 INFO: Points where local peeks in curvature occur are 110 93 63 (curv = 0.0224103) 112 98 58 (curv = 0.0266099) 112 108 48 (curv = 0.0335209) 114 116 43 (curv = 0.0459173) INFO: Intermediate dominant points are 110 80 72 110 93 63 114 116 43 113 133 37 INFO: Final dominant points are 110 80 72 110 93 63 114 116 43 113 133 37 WARN: Defaulting to equidistant control points INFO: Selected control points are 110 80 72 112 97 59 114 115 43 113 133 37 INFO: Distances between consecutive points are 21 24 19 INFO: Selected control points in test subject's space are 74 47 24 75 56 18 75 64 10 75 73 7 INFO: Distances between consecutive points in test subject's space are 11 11 9 WARN: Could not find satisfactory control point fit - try 12 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 58 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0483925 INFO: Points where local peeks in curvature occur are 116 110 45 (curv = 0.0855854) 120 118 45 (curv = 0.124355) INFO: Intermediate dominant points are 105 86 76 112 96 58 120 118 45 116 131 36 INFO: Final dominant points are 105 86 76 116 108 46 120 118 45 116 131 36 WARN: Defaulting to equidistant control points INFO: Selected control points are 105 86 76 112 96 58 118 113 45 116 131 36 INFO: Distances between consecutive points are 22 22 20 INFO: Selected control points in test subject's space are 72 50 26 75 55 17 77 63 11 76 72 7 INFO: Distances between consecutive points in test subject's space are 11 10 10 WARN: Could not find satisfactory control point fit - try 13 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 53 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0240422 INFO: Points where local peeks in curvature occur are 112 106 50 (curv = 0.0269974) 115 116 44 (curv = 0.0463711) INFO: Intermediate dominant points are 112 81 72 112 106 50 115 116 44 116 133 38 INFO: Final dominant points are 112 81 72 112 106 50 115 116 44 116 133 38 INFO: Selected control points are 112 81 72 110 104 50 112 113 43 116 133 38 INFO: Distances between consecutive points are 32 12 21 INFO: Selected control points in test subject's space are 75 48 24 74 59 14 74 63 10 76 73 8 INFO: Distances between consecutive points in test subject's space are 15 6 10 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_cpts_4.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.nii.gz Done in 24.396 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.cab_PP.bbr.trk INFO: Rejected 177 streamlines for straying off mask INFO: Rejected 64 streamlines for reversing direction INFO: Rejected 12 streamlines as length outliers INFO: Have 3983 total streamlines (min/mean/max length: 13/44/90) Processing pathway 14 of 18... Matching streamline ends INFO: Have 1185 non-truncated streamlines (min/mean/max length: 26/54/92) INFO: Center of mass of start points: (71+/-5, 81+/-7, 77+/-8) INFO: Center of mass of midpoints: (67+/-2, 101+/-2, 56+/-2) INFO: Center of mass of end points: (63+/-4, 127+/-7, 38+/-4) INFO: Split streamlines into 13 segments Computing path histograms INFO: Total streamline volume is 16728 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 54 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0303442 INFO: Points where local peeks in curvature occur are INFO: Intermediate dominant points are 67 74 78 70 92 66 67 107 47 62 124 40 INFO: Final dominant points are 67 74 78 68 100 57 67 115 41 62 124 40 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 74 78 71 91 67 67 106 49 62 124 40 INFO: Distances between consecutive points are 21 24 21 INFO: Selected control points in test subject's space are 54 44 27 56 52 22 53 60 14 51 68 9 INFO: Distances between consecutive points in test subject's space are 10 12 10 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 49 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0351119 INFO: Points where local peeks in curvature occur are 66 93 66 (curv = 0.0427444) 65 103 55 (curv = 0.0373967) 66 105 51 (curv = 0.0435174) 64 116 41 (curv = 0.12206) INFO: Intermediate dominant points are 70 83 80 66 93 66 66 105 51 66 125 40 INFO: Final dominant points are 70 83 80 66 93 66 66 105 51 66 125 40 WARN: Defaulting to equidistant control points INFO: Selected control points are 70 83 80 66 96 64 66 107 48 66 125 40 INFO: Distances between consecutive points are 21 19 20 INFO: Selected control points in test subject's space are 55 49 28 53 55 21 53 60 13 53 69 9 INFO: Distances between consecutive points in test subject's space are 9 9 10 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 46 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.027349 INFO: Points where local peeks in curvature occur are 67 105 49 (curv = 0.0296015) 65 115 42 (curv = 0.0629775) INFO: Intermediate dominant points are 67 82 75 70 96 60 65 115 42 66 124 41 INFO: Final dominant points are 67 82 75 66 107 48 65 115 42 66 124 41 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 82 75 70 96 60 66 109 46 66 124 41 INFO: Distances between consecutive points are 21 20 16 INFO: Selected control points in test subject's space are 54 48 26 55 55 19 53 61 12 53 68 10 INFO: Distances between consecutive points in test subject's space are 10 9 7 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 61 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0416825 INFO: Points where local peeks in curvature occur are 67 99 54 (curv = 0.0446932) 61 113 44 (curv = 0.0623091) 61 125 43 (curv = 0.0815054) INFO: Intermediate dominant points are 66 78 71 67 97 58 61 113 44 65 133 36 INFO: Final dominant points are 66 78 71 66 102 51 61 113 44 65 133 36 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 78 71 67 97 58 61 115 43 65 133 36 INFO: Distances between consecutive points are 23 24 20 INFO: Selected control points in test subject's space are 53 46 24 54 55 18 51 64 11 52 72 7 INFO: Distances between consecutive points in test subject's space are 11 12 9 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 50 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0360718 INFO: Points where local peeks in curvature occur are 66 93 67 (curv = 0.0399164) 66 102 58 (curv = 0.0622563) 66 107 48 (curv = 0.0580804) INFO: Intermediate dominant points are 71 83 80 66 102 58 66 108 47 66 125 40 INFO: Final dominant points are 71 83 80 66 102 58 65 115 41 66 125 40 WARN: Defaulting to equidistant control points INFO: Selected control points are 71 83 80 66 96 63 66 107 47 66 125 40 INFO: Distances between consecutive points are 22 19 19 INFO: Selected control points in test subject's space are 56 49 28 53 55 20 53 60 13 53 69 9 INFO: Distances between consecutive points in test subject's space are 10 9 10 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 46 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0316097 INFO: Points where local peeks in curvature occur are 67 105 49 (curv = 0.0494078) 67 115 41 (curv = 0.0969105) INFO: Intermediate dominant points are 72 84 75 70 97 60 67 105 49 62 124 40 INFO: Final dominant points are 72 84 75 69 100 57 67 105 49 62 124 40 INFO: Selected control points are 72 84 75 68 98 57 67 102 47 62 124 40 INFO: Distances between consecutive points are 23 11 24 INFO: Selected control points in test subject's space are 56 49 26 54 56 17 53 58 13 51 68 9 INFO: Distances between consecutive points in test subject's space are 12 5 11 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_cpts_4.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.nii.gz Done in 23.192 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.slfp_PP.bbr.trk INFO: Rejected 308 streamlines for straying off mask INFO: Rejected 696 streamlines for reversing direction INFO: Rejected 31 streamlines as length outliers INFO: Have 9232 total streamlines (min/mean/max length: 20/59/102) Processing pathway 15 of 18... Matching streamline ends INFO: Have 3960 non-truncated streamlines (min/mean/max length: 26/65/102) INFO: Center of mass of start points: (145+/-6, 127+/-5, 98+/-12) INFO: Center of mass of midpoints: (128+/-4, 106+/-4, 102+/-4) INFO: Center of mass of end points: (142+/-10, 84+/-10, 111+/-12) INFO: Split streamlines into 14 segments Computing path histograms INFO: Total streamline volume is 49917 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 72 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.05886 INFO: Points where local peeks in curvature occur are 129 115 99 (curv = 0.0903529) 130 86 103 (curv = 0.141374) INFO: Intermediate dominant points are 150 131 97 129 115 99 129 102 102 130 86 103 150 86 113 INFO: Final dominant points are 150 131 97 129 115 99 128 95 103 130 86 103 150 86 113 INFO: Selected control points are 150 131 97 129 115 98 129 96 103 130 86 104 150 86 113 INFO: Distances between consecutive points are 26 20 10 22 INFO: Selected control points in test subject's space are 93 72 35 83 64 36 83 55 38 83 51 39 93 51 43 INFO: Distances between consecutive points in test subject's space are 13 9 4 11 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 103.295 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.slfp_PP.bbr.trk INFO: Rejected 871 streamlines for straying off mask INFO: Rejected 409 streamlines for reversing direction INFO: Rejected 82 streamlines as length outliers INFO: Have 14260 total streamlines (min/mean/max length: 18/63/97) Processing pathway 16 of 18... Matching streamline ends INFO: Have 6906 non-truncated streamlines (min/mean/max length: 27/69/100) INFO: Center of mass of start points: (34+/-8, 130+/-6, 97+/-12) INFO: Center of mass of midpoints: (52+/-4, 109+/-3, 103+/-3) INFO: Center of mass of end points: (40+/-9, 81+/-10, 113+/-11) New invocation of trac-all Wed Apr 24 22:34:40 EDT 2013 /autofs/space/pluto_001/users/ayendiki/tract /usr/local/freesurfer/dev/bin/trac-all -bedp -c dmrirc.tutorial -no-isrunning Subject elmo.2012 SUBJECTS_DIR /space/freesurfer/subjects/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/dev Actual FREESURFER_HOME /autofs/cluster/freesurfer/centos6_x86_64/dev build-stamp.txt: freesurfer-x86_64-unknown-linux-gnu-dev5-20130424 ayendiki launchpad Linux launchpad 2.6.32-279.22.1.el6.x86_64 #1 SMP Wed Feb 6 03:10:46 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 8192 memorylocked 64 kbytes maxproc 256703 total used free shared buffers cached Mem: 32877832 14728548 18149284 0 619928 9193408 -/+ buffers/cache: 4915212 27962620 Swap: 67108848 22796 67086052 ######################################## Program versions: $Id: trac-all,v 1.47 2013/02/23 01:59:42 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-02:34:40-GMT BuildTimeStamp: Apr 24 2013 20:05:32 CVS: $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 FLIRT version 5.5 $Id: bbregister,v 1.56 2013/03/25 18:04:29 greve Exp $ $Id: mri_cvs_register,v 1.45 2013/02/07 22:48:48 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-02:34:40-GMT BuildTimeStamp: Apr 24 2013 20:05:32 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-02:34:40-GMT BuildTimeStamp: Apr 24 2013 20:05:32 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-02:34:40-GMT BuildTimeStamp: Apr 24 2013 20:05:32 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-02:34:40-GMT BuildTimeStamp: Apr 24 2013 20:05:32 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 INFO: Split streamlines into 15 segments Computing path histograms INFO: Total streamline volume is 63561 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 73 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0597307 INFO: Points where local peeks in curvature occur are 50 119 100 (curv = 0.116181) 51 90 103 (curv = 0.0712553) 53 81 102 (curv = 0.194926) INFO: Intermediate dominant points are 33 127 97 50 119 100 52 99 105 53 81 102 39 73 122 INFO: Final dominant points are 33 127 97 50 119 100 51 90 103 53 81 102 39 73 122 INFO: Selected control points are 33 127 97 50 118 101 51 91 105 53 80 102 39 73 122 INFO: Distances between consecutive points are 20 27 12 25 INFO: Selected control points in test subject's space are 38 70 36 46 65 38 46 52 40 47 47 39 41 44 48 INFO: Distances between consecutive points in test subject's space are 10 13 5 11 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 272.648 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/lh.slft_PP.bbr.trk INFO: Rejected 479 streamlines for straying off mask INFO: Rejected 66 streamlines for reversing direction INFO: Rejected 34 streamlines as length outliers INFO: Have 7315 total streamlines (min/mean/max length: 33/90/136) Processing pathway 17 of 18... Matching streamline ends INFO: Have 4565 non-truncated streamlines (min/mean/max length: 40/92/139) INFO: Center of mass of start points: (144+/-7, 132+/-6, 94+/-10) INFO: Center of mass of midpoints: (126+/-2, 96+/-4, 101+/-3) INFO: Center of mass of end points: (147+/-6, 84+/-13, 65+/-9) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 45674 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 102 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0494031 INFO: Points where local peeks in curvature occur are 130 118 98 (curv = 0.112622) 125 87 100 (curv = 0.0939046) 128 81 94 (curv = 0.0846298) 135 81 74 (curv = 0.072545) INFO: Intermediate dominant points are 148 133 85 130 118 98 125 87 100 135 81 74 150 93 57 INFO: Final dominant points are 148 133 85 130 118 98 125 87 100 135 81 74 150 93 57 INFO: Selected control points are 148 133 85 131 117 99 127 87 100 133 82 74 150 93 57 INFO: Distances between consecutive points are 27 30 27 26 INFO: Selected control points in test subject's space are 92 73 29 84 65 36 82 51 37 85 49 25 93 54 16 INFO: Distances between consecutive points in test subject's space are 13 14 13 13 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 101.122 sec. Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc001/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc002/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc003/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc004/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc005/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc006/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc007/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc008/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc009/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc010/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc011/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc012/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc013/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc014/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc015/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc016/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc017/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc018/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc019/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc020/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc021/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc022/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc023/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc024/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc025/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc026/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc027/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc028/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc029/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc030/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc031/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc032/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/dev/trctrain/trc033/dlabel/mni/rh.slft_PP.bbr.trk INFO: Rejected 89 streamlines for straying off mask INFO: Rejected 16 streamlines for reversing direction INFO: Rejected 30 streamlines as length outliers INFO: Have 3005 total streamlines (min/mean/max length: 31/90/131) Processing pathway 18 of 18... Matching streamline ends INFO: Have 1636 non-truncated streamlines (min/mean/max length: 55/91/133) INFO: Center of mass of start points: (40+/-9, 135+/-8, 97+/-15) INFO: Center of mass of midpoints: (56+/-2, 96+/-3, 103+/-3) INFO: Center of mass of end points: (31+/-6, 81+/-9, 71+/-8) INFO: Split streamlines into 24 segments Computing path histograms INFO: Total streamline volume is 31558 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 89 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0509719 INFO: Points where local peeks in curvature occur are 52 117 101 (curv = 0.106241) 56 90 103 (curv = 0.0762605) 53 80 91 (curv = 0.051943) 53 80 85 (curv = 0.0567582) 49 80 78 (curv = 0.0531748) INFO: Intermediate dominant points are 33 129 101 52 117 101 56 90 103 49 80 78 33 76 75 INFO: Final dominant points are 33 129 101 52 117 101 56 90 103 49 80 78 33 76 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 129 101 54 114 102 57 91 103 52 80 84 33 76 75 INFO: Distances between consecutive points are 26 23 23 21 INFO: Selected control points in test subject's space are 38 71 38 48 63 38 49 53 39 47 47 30 38 45 26 INFO: Distances between consecutive points in test subject's space are 13 10 11 10 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 89 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0523631 INFO: Points where local peeks in curvature occur are 52 117 101 (curv = 0.112716) 57 95 104 (curv = 0.0676929) 55 87 102 (curv = 0.0762004) 53 81 94 (curv = 0.0786657) 52 80 85 (curv = 0.0559462) INFO: Intermediate dominant points are 31 131 99 52 117 101 57 95 104 53 81 94 34 78 74 INFO: Final dominant points are 31 131 99 52 117 101 57 95 104 53 81 94 34 78 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 131 99 53 116 102 57 92 103 52 80 85 34 78 74 INFO: Distances between consecutive points are 27 24 22 21 INFO: Selected control points in test subject's space are 37 71 37 47 64 38 49 53 39 47 47 31 38 46 26 INFO: Distances between consecutive points in test subject's space are 12 11 10 10 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 84 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0539997 INFO: Points where local peeks in curvature occur are 53 115 102 (curv = 0.101316) 53 106 104 (curv = 0.0632939) 56 94 104 (curv = 0.0741206) 55 87 102 (curv = 0.0816165) 54 81 93 (curv = 0.0717009) 51 80 82 (curv = 0.0637529) INFO: Intermediate dominant points are 33 129 101 53 115 102 55 87 102 51 80 82 35 78 74 INFO: Final dominant points are 33 129 101 53 115 102 55 87 102 51 80 82 35 78 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 129 101 53 115 102 56 94 104 53 80 90 35 78 74 INFO: Distances between consecutive points are 24 21 20 24 INFO: Selected control points in test subject's space are 38 71 38 47 64 38 49 54 40 47 47 33 39 46 26 INFO: Distances between consecutive points in test subject's space are 11 10 10 11 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 85 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0544688 INFO: Points where local peeks in curvature occur are 52 115 101 (curv = 0.106907) 52 106 103 (curv = 0.0588014) 55 95 104 (curv = 0.0687607) 54 87 102 (curv = 0.0658239) 53 81 95 (curv = 0.0721727) INFO: Intermediate dominant points are 31 130 99 52 115 101 55 93 104 53 81 95 35 77 76 INFO: Final dominant points are 31 130 99 52 115 101 55 92 103 53 81 95 35 77 76 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 130 99 52 115 101 55 93 104 52 80 85 35 77 76 INFO: Distances between consecutive points are 26 22 23 19 INFO: Selected control points in test subject's space are 37 71 37 47 64 38 48 53 40 47 47 31 39 46 27 INFO: Distances between consecutive points in test subject's space are 12 11 11 9 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 80 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0429231 INFO: Points where local peeks in curvature occur are 54 117 105 (curv = 0.0760724) 57 101 104 (curv = 0.0470509) 56 94 102 (curv = 0.0574063) 53 84 90 (curv = 0.0717983) INFO: Intermediate dominant points are 41 129 102 54 117 105 53 84 90 43 82 80 25 78 73 INFO: Final dominant points are 41 129 102 54 117 105 53 84 90 36 82 73 25 78 73 INFO: Selected control points are 41 129 102 55 116 107 53 84 92 35 82 73 25 78 73 INFO: Distances between consecutive points are 20 35 26 11 INFO: Selected control points in test subject's space are 41 71 38 48 64 41 47 49 34 39 48 25 34 46 26 INFO: Distances between consecutive points in test subject's space are 10 17 12 5 Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_* Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 32.345 sec. dmri_train done #------------------------------------- trac-preproc finished without error at Wed Apr 24 22:40:06 EDT 2013 New invocation of trac-all Thu Apr 25 09:54:04 EDT 2013 /autofs/space/pluto_001/users/ayendiki/tract /usr/local/freesurfer/dev/bin/trac-all -c dmrirc.tutorial -path Subject elmo.2012 SUBJECTS_DIR /space/freesurfer/subjects/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/dev Actual FREESURFER_HOME /autofs/cluster/freesurfer/centos6_x86_64/dev build-stamp.txt: freesurfer-Linux-centos6_x86_64-dev-20130424 ayendiki launchpad Linux launchpad 2.6.32-279.22.1.el6.x86_64 #1 SMP Wed Feb 6 03:10:46 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 8192 memorylocked 64 kbytes maxproc 256703 total used free shared buffers cached Mem: 32877832 14107880 18769952 0 620208 8702448 -/+ buffers/cache: 4785224 28092608 Swap: 67108848 22796 67086052 ######################################## Program versions: $Id: trac-all,v 1.47 2013/02/23 01:59:42 ayendiki Exp $ mri_convert --all-info ProgramName: mri_convert ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-13:54:04-GMT BuildTimeStamp: Apr 24 2013 20:05:32 CVS: $Id: mri_convert.c,v 1.203 2012/12/06 21:44:17 greve Exp $ User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.56 2013/03/25 18:04:29 greve Exp $ $Id: mri_cvs_register,v 1.45 2013/02/07 22:48:48 lzollei Exp $ ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-13:54:04-GMT BuildTimeStamp: Apr 24 2013 20:05:32 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-13:54:04-GMT BuildTimeStamp: Apr 24 2013 20:05:32 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-13:54:04-GMT BuildTimeStamp: Apr 24 2013 20:05:32 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/04/25-13:54:04-GMT BuildTimeStamp: Apr 24 2013 20:05:32 CVS: User: ayendiki Machine: launchpad Platform: Linux PlatformVersion: 2.6.32-279.22.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 New invocation of trac-paths ayendiki compute-0-29 Linux compute-0-29 2.6.32-279.22.1.el6.x86_64 #1 SMP Wed Feb 6 03:10:46 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 10240 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 7340032 kbytes descriptors 32768 memorylocked 64 kbytes maxproc 256703 total used free shared buffers cached Mem: 32877836 13106512 19771324 0 186232 1310824 -/+ buffers/cache: 11609456 21268380 Swap: 67108856 130616 66978240 #------------------------------------- /usr/local/freesurfer/dev/bin/trac-paths #------------------------------------- #@# Path reconstruction Thu Apr 25 09:55:12 EDT 2013 rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cst_AS_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cst_AS_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ilf_AS_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ilf_AS_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.unc_AS_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.unc_AS_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fmajor_PP_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fminor_PP_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.atr_PP_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.atr_PP_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ccg_PP_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ccg_PP_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cab_PP_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cab_PP_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slfp_PP_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slfp_PP_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slft_PP_avg33_mni_bbr rm -rf /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slft_PP_avg33_mni_bbr /usr/local/freesurfer/dev/bin/dmri_paths --outdir /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cst_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cst_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ilf_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ilf_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.unc_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.unc_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fmajor_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fminor_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.atr_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.atr_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ccg_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ccg_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cab_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cab_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slfp_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slfp_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slft_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slft_PP_avg33_mni_bbr --dwi /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz --grad /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/bvecs --bval /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/bvals --mask /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/diff2mni.bbr.mat --init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt --nprior /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all --lprior /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all --seg /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_paths --outdir /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cst_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cst_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ilf_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ilf_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.unc_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.unc_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fmajor_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fminor_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.atr_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.atr_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ccg_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ccg_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cab_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cab_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slfp_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slfp_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slft_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slft_PP_avg33_mni_bbr --dwi /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz --grad /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/bvecs --bval /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/bvals --mask /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/diff2mni.bbr.mat --init /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt --nprior /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all --lprior /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all --seg /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Output directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cst_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cst_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ilf_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ilf_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.unc_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.unc_AS_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fmajor_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fminor_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.atr_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.atr_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ccg_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ccg_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cab_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cab_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slfp_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slfp_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slft_PP_avg33_mni_bbr /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slft_PP_avg33_mni_bbr DWIs: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz Gradients: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/bvecs B-values: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/bvals Mask: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/aparc+aseg_mask.bbr.nii.gz BEDPOST directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt End ROI 1: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz End ROI 2: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz Neighbor aseg prior: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all Neighbor aseg label ID list: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all Local aseg label ID list: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/aparc+aseg.nii.gz DWI-to-atlas affine registration: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/diff2mni.bbr.mat Number of burn-in samples: 200 Number of post-burn-in samples: 7500 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt Loading DWIs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dwi.nii.gz Loading mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri.bedpostX Loading b-values from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/bvals Loading gradients from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/bvecs INFO: Found 10 baseline images (b = 0) out of a total of 70 frames INFO: Found 176689 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz Loading affine registration from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/xfms/diff2mni.bbr.mat Loading segmentation map from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/aparc+aseg.nii.gz Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cst_AS_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt Processing pathway 1 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cst_AS_avg33_mni_bbr Done in 166.412 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cst_AS_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt Processing pathway 2 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 3 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cst_AS_avg33_mni_bbr Done in 157.283 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ilf_AS_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt Processing pathway 3 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ilf_AS_avg33_mni_bbr Done in 110.194 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ilf_AS_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt Processing pathway 4 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ilf_AS_avg33_mni_bbr Done in 118.778 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.unc_AS_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt Processing pathway 5 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.unc_AS_avg33_mni_bbr Done in 90.713 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.unc_AS_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt Processing pathway 6 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.unc_AS_avg33_mni_bbr Done in 116.039 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fmajor_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt Processing pathway 7 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 5 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fmajor_PP_avg33_mni_bbr Done in 226.131 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fminor_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 8 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fminor_PP_avg33_mni_bbr Done in 124.938 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.atr_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 9 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.atr_PP_avg33_mni_bbr Done in 109.493 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.atr_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 10 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 2 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.atr_PP_avg33_mni_bbr Done in 110.703 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ccg_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 11 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 2 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ccg_PP_avg33_mni_bbr Done in 115.807 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ccg_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 12 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 3 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ccg_PP_avg33_mni_bbr Done in 110.335 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cab_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt Processing pathway 13 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 2 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cab_PP_avg33_mni_bbr Done in 50.531 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cab_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt Processing pathway 14 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cab_PP_avg33_mni_bbr Done in 50.646 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slfp_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 15 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slfp_PP_avg33_mni_bbr Done in 101.56 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slfp_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 16 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slfp_PP_avg33_mni_bbr Done in 103.2 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slft_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 17 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 4 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 4 INFO: Attempting to perturb control points INFO: Success after 2 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slft_PP_avg33_mni_bbr Done in 126.998 sec. Creating output directory /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slft_PP_avg33_mni_bbr Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 18 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 3 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 4 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 4 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 4 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 4 INFO: Attempting to perturb control points INFO: Success after 5 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slft_PP_avg33_mni_bbr Done in 123.203 sec. dmri_paths done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cst_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path lh.cst --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cst_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cst_AS_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cst_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path lh.cst --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cst_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cst_AS_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cst_AS_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit Pathway name: lh.cst Subject name: elmo.2012 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cst_AS_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cst_AS_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cst_AS_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cst_AS_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cst_AS_avg33_mni_bbr/path.pd.nii.gz Done in 0.877 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cst_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path rh.cst --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cst_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cst_AS_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cst_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path rh.cst --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cst_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cst_AS_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cst_AS_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit Pathway name: rh.cst Subject name: elmo.2012 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cst_AS_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cst_AS_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cst_AS_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cst_AS_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cst_AS_avg33_mni_bbr/path.pd.nii.gz Done in 0.594 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ilf_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path lh.ilf --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ilf_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ilf_AS_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ilf_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path lh.ilf --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ilf_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ilf_AS_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ilf_AS_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit Pathway name: lh.ilf Subject name: elmo.2012 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ilf_AS_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ilf_AS_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ilf_AS_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ilf_AS_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz Done in 0.556 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ilf_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path rh.ilf --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ilf_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ilf_AS_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ilf_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path rh.ilf --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ilf_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ilf_AS_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ilf_AS_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit Pathway name: rh.ilf Subject name: elmo.2012 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ilf_AS_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ilf_AS_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ilf_AS_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ilf_AS_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz Done in 0.599 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.unc_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path lh.unc --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.unc_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.unc_AS_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.unc_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path lh.unc --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.unc_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.unc_AS_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.unc_AS_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit Pathway name: lh.unc Subject name: elmo.2012 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.unc_AS_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.unc_AS_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.unc_AS_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.unc_AS_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.unc_AS_avg33_mni_bbr/path.pd.nii.gz Done in 0.569 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.unc_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path rh.unc --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.unc_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.unc_AS_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.unc_AS_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path rh.unc --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.unc_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.unc_AS_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.unc_AS_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit Pathway name: rh.unc Subject name: elmo.2012 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.unc_AS_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.unc_AS_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.unc_AS_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.unc_AS_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.unc_AS_avg33_mni_bbr/path.pd.nii.gz Done in 0.573 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fmajor_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path fmajor --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fmajor_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fmajor_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fmajor_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path fmajor --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fmajor_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fmajor_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fmajor_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit Pathway name: fmajor Subject name: elmo.2012 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fmajor_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fmajor_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fmajor_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fmajor_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fmajor_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.582 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fminor_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path fminor --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fminor_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fminor_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fminor_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path fminor --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fminor_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fminor_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fminor_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit Pathway name: fminor Subject name: elmo.2012 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fminor_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fminor_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fminor_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fminor_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/fminor_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.556 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.atr_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path lh.atr --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.atr_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.atr_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.atr_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path lh.atr --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.atr_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.atr_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.atr_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit Pathway name: lh.atr Subject name: elmo.2012 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.atr_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.atr_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.atr_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.atr_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.atr_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.557 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.atr_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path rh.atr --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.atr_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.atr_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.atr_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path rh.atr --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.atr_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.atr_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.atr_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit Pathway name: rh.atr Subject name: elmo.2012 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.atr_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.atr_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.atr_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.atr_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.atr_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.565 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ccg_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path lh.ccg --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ccg_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ccg_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ccg_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path lh.ccg --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ccg_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ccg_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ccg_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit Pathway name: lh.ccg Subject name: elmo.2012 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ccg_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ccg_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ccg_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ccg_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.561 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ccg_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path rh.ccg --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ccg_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ccg_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ccg_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path rh.ccg --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ccg_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ccg_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ccg_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit Pathway name: rh.ccg Subject name: elmo.2012 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ccg_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ccg_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ccg_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ccg_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.566 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cab_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path lh.cab --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cab_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cab_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cab_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path lh.cab --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cab_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cab_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cab_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit Pathway name: lh.cab Subject name: elmo.2012 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cab_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cab_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cab_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cab_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.cab_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.552 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cab_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path rh.cab --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cab_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cab_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cab_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path rh.cab --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cab_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cab_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cab_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit Pathway name: rh.cab Subject name: elmo.2012 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cab_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cab_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cab_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cab_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.cab_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.549 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slfp_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path lh.slfp --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slfp_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slfp_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slfp_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path lh.slfp --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slfp_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slfp_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slfp_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit Pathway name: lh.slfp Subject name: elmo.2012 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slfp_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slfp_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slfp_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slfp_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.556 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slfp_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path rh.slfp --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slfp_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slfp_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slfp_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path rh.slfp --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slfp_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slfp_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slfp_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit Pathway name: rh.slfp Subject name: elmo.2012 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slfp_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slfp_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slfp_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slfp_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.581 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slft_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path lh.slft --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slft_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slft_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slft_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path lh.slft --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slft_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slft_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slft_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit Pathway name: lh.slft Subject name: elmo.2012 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slft_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slft_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slft_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slft_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/lh.slft_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.563 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slft_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path rh.slft --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slft_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slft_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_pathstats --intrc /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slft_PP_avg33_mni_bbr --dtbase /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit --path rh.slft --subj elmo.2012 --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slft_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slft_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input tracula directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slft_PP_avg33_mni_bbr Input DTI fit base: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dmri/dtifit Pathway name: rh.slft Subject name: elmo.2012 Output file for overall measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slft_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slft_PP_avg33_mni_bbr/pathstats.byvoxel.txt Computing statistics on /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slft_PP_avg33_mni_bbr... Loading spline control points from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slft_PP_avg33_mni_bbr/cpts.map.txt Loading spline mask from /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/rh.slft_PP_avg33_mni_bbr/path.pd.nii.gz Done in 0.578 sec. dmri_pathstats done /usr/local/freesurfer/dev/bin/dmri_mergepaths --indir /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath --in fmajor_PP_avg33_mni_bbr/path.pd.nii.gz fminor_PP_avg33_mni_bbr/path.pd.nii.gz lh.atr_PP_avg33_mni_bbr/path.pd.nii.gz lh.cab_PP_avg33_mni_bbr/path.pd.nii.gz lh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz lh.cst_AS_avg33_mni_bbr/path.pd.nii.gz lh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz lh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz lh.slft_PP_avg33_mni_bbr/path.pd.nii.gz lh.unc_AS_avg33_mni_bbr/path.pd.nii.gz rh.atr_PP_avg33_mni_bbr/path.pd.nii.gz rh.cab_PP_avg33_mni_bbr/path.pd.nii.gz rh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz rh.cst_AS_avg33_mni_bbr/path.pd.nii.gz rh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz rh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz rh.slft_PP_avg33_mni_bbr/path.pd.nii.gz rh.unc_AS_avg33_mni_bbr/path.pd.nii.gz --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/merged_avg33_mni_bbr.mgz --ctab /usr/local/freesurfer/dev/FreeSurferColorLUT.txt --thresh .2 cwd /autofs/space/pluto_001/users/ayendiki/tract cmdline /usr/local/freesurfer/dev/bin/dmri_mergepaths --indir /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath --in fmajor_PP_avg33_mni_bbr/path.pd.nii.gz fminor_PP_avg33_mni_bbr/path.pd.nii.gz lh.atr_PP_avg33_mni_bbr/path.pd.nii.gz lh.cab_PP_avg33_mni_bbr/path.pd.nii.gz lh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz lh.cst_AS_avg33_mni_bbr/path.pd.nii.gz lh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz lh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz lh.slft_PP_avg33_mni_bbr/path.pd.nii.gz lh.unc_AS_avg33_mni_bbr/path.pd.nii.gz rh.atr_PP_avg33_mni_bbr/path.pd.nii.gz rh.cab_PP_avg33_mni_bbr/path.pd.nii.gz rh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz rh.cst_AS_avg33_mni_bbr/path.pd.nii.gz rh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz rh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz rh.slft_PP_avg33_mni_bbr/path.pd.nii.gz rh.unc_AS_avg33_mni_bbr/path.pd.nii.gz --out /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/merged_avg33_mni_bbr.mgz --ctab /usr/local/freesurfer/dev/FreeSurferColorLUT.txt --thresh .2 sysname Linux hostname compute-0-29 machine x86_64 user ayendiki Input directory: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath Input files: fmajor_PP_avg33_mni_bbr/path.pd.nii.gz fminor_PP_avg33_mni_bbr/path.pd.nii.gz lh.atr_PP_avg33_mni_bbr/path.pd.nii.gz lh.cab_PP_avg33_mni_bbr/path.pd.nii.gz lh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz lh.cst_AS_avg33_mni_bbr/path.pd.nii.gz lh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz lh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz lh.slft_PP_avg33_mni_bbr/path.pd.nii.gz lh.unc_AS_avg33_mni_bbr/path.pd.nii.gz rh.atr_PP_avg33_mni_bbr/path.pd.nii.gz rh.cab_PP_avg33_mni_bbr/path.pd.nii.gz rh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz rh.cst_AS_avg33_mni_bbr/path.pd.nii.gz rh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz rh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz rh.slft_PP_avg33_mni_bbr/path.pd.nii.gz rh.unc_AS_avg33_mni_bbr/path.pd.nii.gz Output file: /space/freesurfer/subjects/diffusion_tutorial/elmo.2012/dpath/merged_avg33_mni_bbr.mgz Color table file: /autofs/cluster/freesurfer/centos6_x86_64/dev/FreeSurferColorLUT.txt Lower threshold for display: 0.200000 Merging volume 1 of 18... Threshold: 34.2 Name: Corpus Callosum Forceps Major Merging volume 2 of 18... Threshold: 38 Name: Corpus Callosum Forceps Minor Merging volume 3 of 18... Threshold: 35 Name: Left Anterior Thalamic Radiation Merging volume 4 of 18... Threshold: 58.2 Name: Left Cingulum - Angular Bundle Merging volume 5 of 18... Threshold: 69.4 Name: Left Cingulum - Cingulate Gyrus Merging volume 6 of 18... Threshold: 33 Name: Left Corticospinal Tract Merging volume 7 of 18... Threshold: 83 Name: Left Inferior Longitudinal Fasciculus Merging volume 8 of 18... Threshold: 39.8 Name: Left Superior Longitudinal Fasciculus - Parietal Merging volume 9 of 18... Threshold: 32.8 Name: Left Superior Longitudinal Fasciculus - Temporal Merging volume 10 of 18... Threshold: 38.4 Name: Left Uncinate Fasciculus Merging volume 11 of 18... Threshold: 29.4 Name: Right Anterior Thalamic Radiation Merging volume 12 of 18... Threshold: 40.6 Name: Right Cingulum - Angular Bundle Merging volume 13 of 18... Threshold: 95.8 Name: Right Cingulum - Cingulate Gyrus Merging volume 14 of 18... Threshold: 30.6 Name: Right Corticospinal Tract Merging volume 15 of 18... Threshold: 38.8 Name: Right Inferior Longitudinal Fasciculus Merging volume 16 of 18... Threshold: 25.4 Name: Right Superior Longitudinal Fasciculus - Parietal Merging volume 17 of 18... Threshold: 28.8 Name: Right Superior Longitudinal Fasciculus - Temporal Merging volume 18 of 18... Threshold: 40.2 Name: Right Uncinate Fasciculus Done in 2.884 sec. dmri_mergepaths done #------------------------------------- trac-paths finished without error at Thu Apr 25 10:31:51 EDT 2013