rawfunc2surf-sess log file $Id: rawfunc2surf-sess,v 1.28 2015/12/10 22:51:30 zkaufman Exp $ Linux transfer 2.6.32-573.18.1.el6.x86_64 #1 SMP Tue Feb 9 22:46:17 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux Wed Apr 27 14:11:59 EDT 2016 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional /usr/local/freesurfer/dev/fsfast/bin/rawfunc2surf-sess -fwhm 5 -s sess01 -d /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional -fsd bold -trgsubject fsaverage -stc up -update -per-run UpdateOnly 1 ------------------------------ 1/1 sess01 1/1 sess01 001 lh --------- Wed Apr 27 14:11:59 EDT 2016 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/001/masks/brain.fsaverage.lh.pr.nii.gz does not need updating 1/1 sess01 002 lh --------- Wed Apr 27 14:11:59 EDT 2016 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/002/masks/brain.fsaverage.lh.pr.nii.gz does not need updating 1/1 sess01 003 lh --------- Wed Apr 27 14:11:59 EDT 2016 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/003/masks/brain.fsaverage.lh.pr.nii.gz does not need updating 1/1 sess01 004 lh --------- Wed Apr 27 14:11:59 EDT 2016 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/004/masks/brain.fsaverage.lh.pr.nii.gz does not need updating /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/masks/brain.fsaverage.lh.pr.nii.gz does not need updating 1/1 sess01 001 rh --------- Wed Apr 27 14:11:59 EDT 2016 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/001/masks/brain.fsaverage.rh.pr.nii.gz does not need updating 1/1 sess01 002 rh --------- Wed Apr 27 14:11:59 EDT 2016 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/002/masks/brain.fsaverage.rh.pr.nii.gz does not need updating 1/1 sess01 003 rh --------- Wed Apr 27 14:12:00 EDT 2016 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/003/masks/brain.fsaverage.rh.pr.nii.gz does not need updating 1/1 sess01 004 rh --------- Wed Apr 27 14:12:00 EDT 2016 /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/004/masks/brain.fsaverage.rh.pr.nii.gz does not need updating /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/masks/brain.fsaverage.rh.pr.nii.gz does not need updating 1/1 sess01 001 lh --------- Wed Apr 27 14:12:00 EDT 2016 sess01 001 Update not needed 1/1 sess01 002 lh --------- Wed Apr 27 14:12:00 EDT 2016 sess01 002 Update not needed 1/1 sess01 003 lh --------- Wed Apr 27 14:12:00 EDT 2016 sess01 003 Update not needed 1/1 sess01 004 lh --------- Wed Apr 27 14:12:00 EDT 2016 sess01 004 Update not needed 1/1 sess01 001 rh --------- Wed Apr 27 14:12:00 EDT 2016 sess01 001 Update not needed 1/1 sess01 002 rh --------- Wed Apr 27 14:12:00 EDT 2016 sess01 002 Update not needed 1/1 sess01 003 rh --------- Wed Apr 27 14:12:00 EDT 2016 mri_vol2surf --mov /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/003/fmcpr.up.nii.gz --reg /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/003/register.dof6.lta --trgsubject fsaverage --interp trilin --projfrac 0.5 --hemi rh --o /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/003/fmcpr.up.sm5.fsaverage.rh.nii.gz --noreshape --cortex --surfreg sphere.reg srcvol = /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/003/fmcpr.up.nii.gz srcreg = /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/003/register.dof6.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = fsaverage surfreg = sphere.reg ProjFrac = 0.5 thickness = thickness reshape = 0 interp = trilin float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Input reg is LTA -------- original matrix ----------- 0.99985 -0.01758 -0.00046 -0.36206; -0.00410 -0.25832 0.96605 -41.03092; 0.01710 0.96590 0.25835 -2.00325; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /cluster/pubftp/data/tutorial_data/fsfast-tutorial.subjects/fsaverage/label/rh.cortex.label Reading surface /cluster/pubftp/data/tutorial_data/fsfast-tutorial.subjects/fsf01anat/surf/rh.white Done reading source surface Reading thickness /cluster/pubftp/data/tutorial_data/fsfast-tutorial.subjects/fsf01anat/surf/rh.thickness Done Mapping Source Volume onto Source Subject Surface 1 0.5 0.5 0.5 using old Done mapping volume to surface Number of source voxels hit = 8968 Reading source surface registration /cluster/pubftp/data/tutorial_data/fsfast-tutorial.subjects/fsf01anat/surf/rh.sphere.reg Done loading source registration surface Reading target registration /cluster/pubftp/data/tutorial_data/fsfast-tutorial.subjects/fsaverage/surf/rh.sphere.reg Done loading target registration surface Mapping Surfaces (fsf01anat -> fsaverage) surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (160613) Reverse Loop had 36910 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 Done mapping surfaces nSrc121 = 129300, nSrcLost = 0, nSrcMulti = 31313, MnSrcMultiHits = 2.28186 nTrg121 = 135396, nTrgMulti = 28446, MnTrgMultiHits = 2.29755 Masking with /cluster/pubftp/data/tutorial_data/fsfast-tutorial.subjects/fsaverage/label/rh.cortex.label Writing to /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/003/fmcpr.up.sm5.fsaverage.rh.nii.gz Dim: 163842 1 1 mris_fwhm --s fsaverage --hemi rh --smooth-only --i /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/003/fmcpr.up.sm5.fsaverage.rh.nii.gz --fwhm 5 --o /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/003/fmcpr.up.sm5.fsaverage.rh.nii.gz --mask /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/003/masks/brain.fsaverage.rh.nii.gz --no-detrend fsaverage rh white Number of vertices 163842 Number of faces 327680 Total area 65020.839844 GroupSurface 82167.578125 AvgVtxArea 0.396851 AvgVtxDist 0.717994 StdVtxDist 0.193566 Loading mask /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/003/masks/brain.fsaverage.rh.nii.gz Found 149926 voxels in mask Not Polynomial detrending Smoothing input by fwhm=5.000000, gstd=2.123305, niters=18 Only smoothing, so saving and exiting now 1/1 sess01 004 rh --------- Wed Apr 27 14:12:58 EDT 2016 mri_vol2surf --mov /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/004/fmcpr.up.nii.gz --reg /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/004/register.dof6.lta --trgsubject fsaverage --interp trilin --projfrac 0.5 --hemi rh --o /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/004/fmcpr.up.sm5.fsaverage.rh.nii.gz --noreshape --cortex --surfreg sphere.reg srcvol = /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/004/fmcpr.up.nii.gz srcreg = /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/004/register.dof6.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = fsaverage surfreg = sphere.reg ProjFrac = 0.5 thickness = thickness reshape = 0 interp = trilin float2int = round GetProjMax = 0 INFO: float2int code = 0 Done loading volume Input reg is LTA -------- original matrix ----------- 0.99970 -0.02411 -0.00452 -0.54002; -0.00156 -0.24660 0.96912 -41.10436; 0.02448 0.96882 0.24656 -1.89992; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Loading label /cluster/pubftp/data/tutorial_data/fsfast-tutorial.subjects/fsaverage/label/rh.cortex.label Reading surface /cluster/pubftp/data/tutorial_data/fsfast-tutorial.subjects/fsf01anat/surf/rh.white Done reading source surface Reading thickness /cluster/pubftp/data/tutorial_data/fsfast-tutorial.subjects/fsf01anat/surf/rh.thickness Done Mapping Source Volume onto Source Subject Surface 1 0.5 0.5 0.5 using old Done mapping volume to surface Number of source voxels hit = 8932 Reading source surface registration /cluster/pubftp/data/tutorial_data/fsfast-tutorial.subjects/fsf01anat/surf/rh.sphere.reg Done loading source registration surface Reading target registration /cluster/pubftp/data/tutorial_data/fsfast-tutorial.subjects/fsaverage/surf/rh.sphere.reg Done loading target registration surface Mapping Surfaces (fsf01anat -> fsaverage) surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (163842) surf2surf_nnfr: building target hash (res=16). Surf2Surf: Reverse Loop (160613) Reverse Loop had 36910 hits Surf2Surf: Dividing by number of hits (163842) INFO: nSrcLost = 0 Done mapping surfaces nSrc121 = 129300, nSrcLost = 0, nSrcMulti = 31313, MnSrcMultiHits = 2.28186 nTrg121 = 135396, nTrgMulti = 28446, MnTrgMultiHits = 2.29755 Masking with /cluster/pubftp/data/tutorial_data/fsfast-tutorial.subjects/fsaverage/label/rh.cortex.label Writing to /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/004/fmcpr.up.sm5.fsaverage.rh.nii.gz Dim: 163842 1 1 mris_fwhm --s fsaverage --hemi rh --smooth-only --i /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/004/fmcpr.up.sm5.fsaverage.rh.nii.gz --fwhm 5 --o /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/004/fmcpr.up.sm5.fsaverage.rh.nii.gz --mask /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/004/masks/brain.fsaverage.rh.nii.gz --no-detrend fsaverage rh white Number of vertices 163842 Number of faces 327680 Total area 65020.839844 GroupSurface 82167.578125 AvgVtxArea 0.396851 AvgVtxDist 0.717994 StdVtxDist 0.193566 Loading mask /autofs/cluster/pubftp/data/tutorial_data/fsfast-functional/sess01/bold/004/masks/brain.fsaverage.rh.nii.gz Found 149926 voxels in mask Not Polynomial detrending Smoothing input by fwhm=5.000000, gstd=2.123305, niters=18 Only smoothing, so saving and exiting now Wed Apr 27 14:13:55 EDT 2016 rawfunc2surf-sess completed