Sun Jun 23 22:39:46 EDT 2013 /autofs/cluster/freesurfer/subjects/fsfast-tutorial.subjects/fsf08anat/xhemi /space/crash/1/users/greve/freesurferx86/bin/recon-all -sb fsf08anat/xhemi -talairach subjid fsf08anat/xhemi setenv SUBJECTS_DIR /autofs/cluster/freesurfer/subjects/fsfast-tutorial.subjects FREESURFER_HOME /space/crash/1/users/greve/freesurferx86 Actual FREESURFER_HOME /autofs/space/crash_001/users/greve/freesurferx86 build-stamp.txt: freesurfer-x86_64-unknown-linux-gnu-dev5-20130607 Linux compute-0-90 2.6.32-358.2.1.el6.x86_64 #1 SMP Wed Mar 13 00:26:49 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 10240 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 7340032 kbytes descriptors 32768 memorylocked 64 kbytes maxproc 256699 total used free shared buffers cached Mem: 32877600 3800272 29077328 0 199928 1135984 -/+ buffers/cache: 2464360 30413240 Swap: 67108856 117464 66991392 ######################################## program versions used $Id: recon-all,v 1.461 2013/05/08 15:59:02 nicks Exp $ $Id: mri_motion_correct.fsl,v 1.14 2011/03/02 20:16:39 nicks Exp $ mri_convert -all-info ProgramName: mri_convert ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:46-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mri_convert.c,v 1.204 2013/06/05 17:00:52 fischl Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: talairach_avi,v 1.10 2012/07/16 15:54:03 nicks Exp $ mri_convert --version dev build (use --all-info flag for full version info) ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:46-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: tkregister2.c,v 1.126 2012/01/20 21:00:37 greve Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 Program nu_correct, built from: Package MNI N3, version 1.10, compiled by nicks@minerva (x86_64-unknown-linux-gnu) on 2010-02-20 at 17:32:37 ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:46-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:46-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mri_normalize.c,v 1.80 2012/10/16 21:38:35 nicks Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:46-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mri_watershed.cpp,v 1.97 2011/11/08 22:17:40 nicks Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:46-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:46-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mri_segment.c,v 1.41 2011/08/04 19:39:41 fischl Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_label2label ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:46-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mri_label2label.c,v 1.46 2013/04/16 18:30:15 greve Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ======= NUMBER OF OPENMP THREADS = 1 ======= ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:46-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mri_em_register.c,v 1.98 2013/02/06 22:51:40 nicks Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:46-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mri_ca_normalize.c,v 1.62 2012/05/21 15:15:02 fischl Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:46-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mri_ca_register.c,v 1.86 2013/02/07 19:19:07 fischl Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:46-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mri_ca_label.c,v 1.100 2013/05/31 21:21:59 fischl Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:46-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mri_pretess.c,v 1.21 2011/08/15 14:12:46 fischl Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:46-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mri_fill.c,v 1.119 2011/10/25 14:09:58 fischl Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:46-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_concatenate_lta ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:47-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mri_concatenate_lta.c,v 1.10 2011/03/16 21:23:48 nicks Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:47-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:47-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mris_smooth.c,v 1.28 2011/03/02 00:04:34 nicks Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:47-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mris_inflate.c,v 1.44 2012/01/05 18:36:17 greve Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:47-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:47-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:47-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:47-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:47-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:47-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mris_euler_number.c,v 1.10 2013/01/14 22:39:14 greve Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:47-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mris_make_surfaces.c,v 1.145 2013/05/14 16:17:45 fischl Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:47-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mris_register.c,v 1.61 2013/01/15 17:19:03 greve Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:47-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mris_volmask.cpp,v 1.25 2011/03/02 00:04:34 nicks Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:47-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mris_anatomical_stats.c,v 1.73 2013/05/28 19:46:31 greve Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:47-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mrisp_paint.c,v 1.11 2011/03/02 00:04:35 nicks Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:47-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mris_curvature_stats.c,v 1.64 2011/03/02 00:04:30 nicks Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:47-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mris_calc.c,v 1.51 2013/01/31 15:17:09 rudolph Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 $Id: mri_robust_register.cpp,v 1.70 2013/03/06 16:24:35 mreuter Exp $ ProgramName: mri_robust_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:47-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mri_robust_register.cpp,v 1.70 2013/03/06 16:24:35 mreuter Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 $Id: mri_robust_template.cpp,v 1.48 2013/05/21 18:03:15 mreuter Exp $ ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:47-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mri_robust_template.cpp,v 1.48 2013/05/21 18:03:15 mreuter Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:47-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:47-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mri_or.c,v 1.5 2013/03/20 15:03:29 lzollei Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:47-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2013/06/24-02:39:47-GMT BuildTimeStamp: Jun 7 2013 20:04:39 CVS: $Id: mri_segstats.c,v 1.100 2013/06/05 22:21:20 greve Exp $ User: greve Machine: compute-0-90 Platform: Linux PlatformVersion: 2.6.32-358.2.1.el6.x86_64 CompilerName: GCC CompilerVersion: 40400 ####################################### GCADIR /space/crash/1/users/greve/freesurferx86/average GCA RB_all_2008-03-26.gca GCASkull RB_all_withskull_2008-03-26.gca AvgCurvTif average.curvature.filled.buckner40.tif GCSDIR /space/crash/1/users/greve/freesurferx86/average GCS curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ####################################### #-------------------------------------------- #@# Talairach Sun Jun 23 22:39:47 EDT 2013 /autofs/cluster/freesurfer/subjects/fsfast-tutorial.subjects/fsf08anat/xhemi/mri mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale --i orig.mgz --o orig_nu.mgz talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm cp transforms/talairach.auto.xfm transforms/talairach.xfm #------------------------------------------ Started at Sun Jun 23 22:39:46 EDT 2013 Ended at Sun Jun 23 22:42:47 EDT 2013 #@#%# recon-all-run-time-hours 0.050 recon-all -s fsf08anat/xhemi finished without error at Sun Jun 23 22:42:47 EDT 2013