Tue Jul 11 23:02:03 EDT 2023 /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2/bin/trac-all -c /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/dmrirc.bids_cm.banda -prep Subject sub-BANDA001 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2 Actual FREESURFER_HOME /autofs/vast/freesurfer/centos7_x86_64/7.3.2 build-stamp.txt: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 cy281 curie.nmr.mgh.harvard.edu Linux curie.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 131070 memorylocked 64 kbytes maxproc 767413 maxlocks unlimited maxsignal 767413 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 196490796 56477084 1086760 353488 138926952 138612288 Swap: 67108860 8704 67100156 ######################################## Program versions: trac-all 7.3.2 mri_convert --all-info ProgramName: mri_convert ProgramArguments: mri_convert --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/12-03:02:03-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: cy281 Machine: curie.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 FLIRT version 6.0 bbregister 7.3.2 mri_cvs_register 7.3.2 ProgramName: dmri_motion ProgramArguments: /usr/local/freesurfer/7.3.2/bin/dmri_motion --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/12-03:02:03-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: cy281 Machine: curie.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_train ProgramArguments: /usr/local/freesurfer/7.3.2/bin/dmri_train --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/12-03:02:04-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: cy281 Machine: curie.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_paths ProgramArguments: /usr/local/freesurfer/7.3.2/bin/dmri_paths --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/12-03:02:04-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: cy281 Machine: curie.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_pathstats ProgramArguments: /usr/local/freesurfer/7.3.2/bin/dmri_pathstats --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/12-03:02:04-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: cy281 Machine: curie.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_mergepaths ProgramArguments: /usr/local/freesurfer/7.3.2/bin/dmri_mergepaths --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/12-03:02:04-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: cy281 Machine: curie.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_group ProgramArguments: /usr/local/freesurfer/7.3.2/bin/dmri_group --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/12-03:02:04-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: cy281 Machine: curie.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 New invocation of trac-preproc cy281 curie.nmr.mgh.harvard.edu Linux curie.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 131070 memorylocked 64 kbytes maxproc 767413 maxlocks unlimited maxsignal 767413 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 196490796 56476204 1064212 353488 138950380 138613168 Swap: 67108860 8704 67100156 #------------------------------------- /usr/local/freesurfer/7.3.2/bin/trac-preproc #------------------------------------- #@# Image corrections Tue Jul 11 23:02:05 EDT 2023 rm -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.bvecs mri_convert --bvec-voxel /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA001/dwi/sub-BANDA001_run-dir98_AP_dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.nii.gz mri_convert --bvec-voxel /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA001/dwi/sub-BANDA001_run-dir98_AP_dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA001/dwi/sub-BANDA001_run-dir98_AP_dwi.nii.gz... INFO: This is an unsigined short. TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.nii.gz... rm -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.bvecs mri_convert --bvec-voxel /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA001/dwi/sub-BANDA001_run-dir98_PA_dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.nii.gz mri_convert --bvec-voxel /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA001/dwi/sub-BANDA001_run-dir98_PA_dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA001/dwi/sub-BANDA001_run-dir98_PA_dwi.nii.gz... INFO: This is an unsigined short. TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.nii.gz... rm -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.bvecs mri_convert --bvec-voxel /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA001/dwi/sub-BANDA001_run-dir99_AP_dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.nii.gz mri_convert --bvec-voxel /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA001/dwi/sub-BANDA001_run-dir99_AP_dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA001/dwi/sub-BANDA001_run-dir99_AP_dwi.nii.gz... INFO: This is an unsigined short. TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.nii.gz... rm -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.bvecs mri_convert --bvec-voxel /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA001/dwi/sub-BANDA001_run-dir99_PA_dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.nii.gz mri_convert --bvec-voxel /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA001/dwi/sub-BANDA001_run-dir99_PA_dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA001/dwi/sub-BANDA001_run-dir99_PA_dwi.nii.gz... INFO: This is an unsigined short. TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.nii.gz... rm -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.bvals.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.bvecs.tmp mv -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.bvecs.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.bvecs mv -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.bvals.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.bvals orientLAS /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.1.nii.gz INFO: input image orientation is LAS INFO: input image determinant is -3.375 awk: fatal: cannot open file `is' for reading (No such file or directory) awk: fatal: cannot open file `is' for reading (No such file or directory) awk: fatal: cannot open file `is' for reading (No such file or directory) mri_convert -oni INFO: -onj This -onk is -oid 0 0 0 -ojd 0 0 0 -okd 0 0 0 -oc -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.1.nii.gz mri_convert -oni INFO: -onj This -onk is -oid 0 0 0 -ojd 0 0 0 -okd 0 0 0 -oc -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.1.nii.gz mri_convert: error converting "INFO:" to an integer for -oni flag, incorrect # of args (need 1)? type mri_convert -u for usage INFO: found /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.bvals, copying INFO: found /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.bvecs, converting to LAS rm -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.bvals.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.bvecs.tmp mv -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.bvecs.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.bvecs mv -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.bvals.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.bvals orientLAS /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.2.nii.gz INFO: input image orientation is LAS INFO: input image determinant is -3.375 awk: fatal: cannot open file `is' for reading (No such file or directory) awk: fatal: cannot open file `is' for reading (No such file or directory) awk: fatal: cannot open file `is' for reading (No such file or directory) mri_convert -oni INFO: -onj This -onk is -oid 0 0 0 -ojd 0 0 0 -okd 0 0 0 -oc -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.2.nii.gz mri_convert -oni INFO: -onj This -onk is -oid 0 0 0 -ojd 0 0 0 -okd 0 0 0 -oc -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.2.nii.gz mri_convert: error converting "INFO:" to an integer for -oni flag, incorrect # of args (need 1)? type mri_convert -u for usage INFO: found /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.bvals, copying INFO: found /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.bvecs, converting to LAS rm -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.bvals.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.bvecs.tmp mv -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.bvecs.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.bvecs mv -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.bvals.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.bvals orientLAS /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.3.nii.gz INFO: input image orientation is LAS INFO: input image determinant is -3.375 awk: fatal: cannot open file `is' for reading (No such file or directory) awk: fatal: cannot open file `is' for reading (No such file or directory) awk: fatal: cannot open file `is' for reading (No such file or directory) mri_convert -oni INFO: -onj This -onk is -oid 0 0 0 -ojd 0 0 0 -okd 0 0 0 -oc -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.3.nii.gz mri_convert -oni INFO: -onj This -onk is -oid 0 0 0 -ojd 0 0 0 -okd 0 0 0 -oc -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.3.nii.gz mri_convert: error converting "INFO:" to an integer for -oni flag, incorrect # of args (need 1)? type mri_convert -u for usage INFO: found /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.bvals, copying INFO: found /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.bvecs, converting to LAS rm -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.bvals.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.bvecs.tmp mv -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.bvecs.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.bvecs mv -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.bvals.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.bvals orientLAS /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.4.nii.gz INFO: input image orientation is LAS INFO: input image determinant is -3.375 awk: fatal: cannot open file `is' for reading (No such file or directory) awk: fatal: cannot open file `is' for reading (No such file or directory) awk: fatal: cannot open file `is' for reading (No such file or directory) mri_convert -oni INFO: -onj This -onk is -oid 0 0 0 -ojd 0 0 0 -okd 0 0 0 -oc -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.4.nii.gz mri_convert -oni INFO: -onj This -onk is -oid 0 0 0 -ojd 0 0 0 -okd 0 0 0 -oc -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.4.nii.gz mri_convert: error converting "INFO:" to an integer for -oni flag, incorrect # of args (need 1)? type mri_convert -u for usage INFO: found /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.bvals, copying INFO: found /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.bvecs, converting to LAS mri_convert --frame 0 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.1.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb_orig_las.1.nii.gz mri_convert --frame 0 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.1.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb_orig_las.1.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.1.nii.gz... error: niiRead(): error opening file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.1.nii.gz Linux curie.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux trac-preproc exited with ERRORS at Tue Jul 11 23:04:51 EDT 2023 New invocation of trac-all Wed Jul 12 12:29:50 EDT 2023 /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2/bin/trac-all -c /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/dmrirc.bids_cm.banda -prep Subject sub-BANDA001 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2 Actual FREESURFER_HOME /autofs/vast/freesurfer/centos7_x86_64/7.3.2 build-stamp.txt: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 cy281 curie.nmr.mgh.harvard.edu Linux curie.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 131070 memorylocked 64 kbytes maxproc 767413 maxlocks unlimited maxsignal 767413 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 196490796 56928744 2630880 363572 136931172 138150616 Swap: 67108860 13568 67095292 ######################################## Program versions: trac-all 7.3.2 mri_convert --all-info ProgramName: mri_convert ProgramArguments: mri_convert --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/12-16:29:51-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: cy281 Machine: curie.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 FLIRT version 6.0 bbregister 7.3.2 mri_cvs_register 7.3.2 ProgramName: dmri_motion ProgramArguments: /usr/local/freesurfer/7.3.2/bin/dmri_motion --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/12-16:29:51-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: cy281 Machine: curie.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_train ProgramArguments: /usr/local/freesurfer/7.3.2/bin/dmri_train --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/12-16:29:51-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: cy281 Machine: curie.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_paths ProgramArguments: /usr/local/freesurfer/7.3.2/bin/dmri_paths --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/12-16:29:51-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: cy281 Machine: curie.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_pathstats ProgramArguments: /usr/local/freesurfer/7.3.2/bin/dmri_pathstats --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/12-16:29:51-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: cy281 Machine: curie.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_mergepaths ProgramArguments: /usr/local/freesurfer/7.3.2/bin/dmri_mergepaths --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/12-16:29:51-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: cy281 Machine: curie.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_group ProgramArguments: /usr/local/freesurfer/7.3.2/bin/dmri_group --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/12-16:29:51-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: cy281 Machine: curie.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 New invocation of trac-preproc cy281 curie.nmr.mgh.harvard.edu Linux curie.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize unlimited coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 131070 memorylocked 64 kbytes maxproc 767413 maxlocks unlimited maxsignal 767413 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 196490796 56928968 2630640 363572 136931188 138150376 Swap: 67108860 13568 67095292 #------------------------------------- /usr/local/freesurfer/7.3.2/bin/trac-preproc #------------------------------------- #@# Image corrections Wed Jul 12 12:29:52 EDT 2023 rm -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.bvecs mri_convert --bvec-voxel /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA001/dwi/sub-BANDA001_run-dir98_AP_dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.nii.gz mri_convert --bvec-voxel /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA001/dwi/sub-BANDA001_run-dir98_AP_dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA001/dwi/sub-BANDA001_run-dir98_AP_dwi.nii.gz... niiRead(): detected input as 64 bit double, reading in as 32 bit float TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.nii.gz... rm -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.bvecs mri_convert --bvec-voxel /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA001/dwi/sub-BANDA001_run-dir98_PA_dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.nii.gz mri_convert --bvec-voxel /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA001/dwi/sub-BANDA001_run-dir98_PA_dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA001/dwi/sub-BANDA001_run-dir98_PA_dwi.nii.gz... niiRead(): detected input as 64 bit double, reading in as 32 bit float TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.nii.gz... rm -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.bvecs mri_convert --bvec-voxel /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA001/dwi/sub-BANDA001_run-dir99_AP_dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.nii.gz mri_convert --bvec-voxel /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA001/dwi/sub-BANDA001_run-dir99_AP_dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA001/dwi/sub-BANDA001_run-dir99_AP_dwi.nii.gz... niiRead(): detected input as 64 bit double, reading in as 32 bit float TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.nii.gz... rm -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.bvecs mri_convert --bvec-voxel /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA001/dwi/sub-BANDA001_run-dir99_PA_dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.nii.gz mri_convert --bvec-voxel /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA001/dwi/sub-BANDA001_run-dir99_PA_dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/bids_cm/sub-BANDA001/dwi/sub-BANDA001_run-dir99_PA_dwi.nii.gz... niiRead(): detected input as 64 bit double, reading in as 32 bit float TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.nii.gz... rm -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.bvals.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.bvecs.tmp mv -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.bvecs.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.bvecs mv -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.bvals.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.bvals orientLAS /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.1.nii.gz INFO: input image orientation is LAS INFO: input image determinant is -3.375 mri_convert -oni 140 -onj 140 -onk 92 -oid -0.999223 0.0236447 -0.0315337 -ojd 0.0113363 0.938674 0.344621 -okd -0.0377483 -0.343995 0.938212 -oc 3.43374 9.73576 11.5723 -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.1.nii.gz mri_convert -oni 140 -onj 140 -onk 92 -oid -0.999223 0.0236447 -0.0315337 -ojd 0.0113363 0.938674 0.344621 -okd -0.0377483 -0.343995 0.938212 -oc 3.43374 9.73576 11.5723 -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.1.nii.gz normalizing out_j_direction: (0.0113363, 0.938674, 0.344621) -> (0.0113363, 0.938673, 0.344621) normalizing out_k_direction: (-0.0377483, -0.343995, 0.938212) -> (-0.0377483, -0.343995, 0.938212) reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.nii.gz... TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.1.nii.gz... INFO: found /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.bvals, copying INFO: found /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.bvecs, converting to LAS rm -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.bvals.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.bvecs.tmp mv -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.bvecs.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.bvecs mv -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.bvals.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.bvals orientLAS /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.2.nii.gz INFO: input image orientation is LAS INFO: input image determinant is -3.375 mri_convert -oni 140 -onj 140 -onk 92 -oid -0.999223 0.0236447 -0.0315337 -ojd 0.0113363 0.938674 0.344621 -okd -0.0377483 -0.343995 0.938212 -oc 3.43374 9.73576 11.5723 -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.2.nii.gz mri_convert -oni 140 -onj 140 -onk 92 -oid -0.999223 0.0236447 -0.0315337 -ojd 0.0113363 0.938674 0.344621 -okd -0.0377483 -0.343995 0.938212 -oc 3.43374 9.73576 11.5723 -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.2.nii.gz normalizing out_j_direction: (0.0113363, 0.938674, 0.344621) -> (0.0113363, 0.938673, 0.344621) normalizing out_k_direction: (-0.0377483, -0.343995, 0.938212) -> (-0.0377483, -0.343995, 0.938212) reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.nii.gz... TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.2.nii.gz... INFO: found /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.bvals, copying INFO: found /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.bvecs, converting to LAS rm -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.bvals.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.bvecs.tmp mv -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.bvecs.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.bvecs mv -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.bvals.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.bvals orientLAS /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.3.nii.gz INFO: input image orientation is LAS INFO: input image determinant is -3.375 mri_convert -oni 140 -onj 140 -onk 92 -oid -0.999223 0.0236447 -0.0315337 -ojd 0.0113363 0.938674 0.344621 -okd -0.0377483 -0.343995 0.938212 -oc 3.43374 9.73576 11.5723 -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.3.nii.gz mri_convert -oni 140 -onj 140 -onk 92 -oid -0.999223 0.0236447 -0.0315337 -ojd 0.0113363 0.938674 0.344621 -okd -0.0377483 -0.343995 0.938212 -oc 3.43374 9.73576 11.5723 -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.3.nii.gz normalizing out_j_direction: (0.0113363, 0.938674, 0.344621) -> (0.0113363, 0.938673, 0.344621) normalizing out_k_direction: (-0.0377483, -0.343995, 0.938212) -> (-0.0377483, -0.343995, 0.938212) reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.nii.gz... TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.3.nii.gz... INFO: found /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.bvals, copying INFO: found /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.bvecs, converting to LAS rm -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.bvals.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.bvecs.tmp mv -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.bvecs.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.bvecs mv -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.bvals.tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.bvals orientLAS /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.4.nii.gz INFO: input image orientation is LAS INFO: input image determinant is -3.375 mri_convert -oni 140 -onj 140 -onk 92 -oid -0.999223 0.0236447 -0.0315337 -ojd 0.0113363 0.938674 0.344621 -okd -0.0377483 -0.343995 0.938212 -oc 3.43374 9.73576 11.5723 -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.4.nii.gz mri_convert -oni 140 -onj 140 -onk 92 -oid -0.999223 0.0236447 -0.0315337 -ojd 0.0113363 0.938674 0.344621 -okd -0.0377483 -0.343995 0.938212 -oc 3.43374 9.73576 11.5723 -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.4.nii.gz normalizing out_j_direction: (0.0113363, 0.938674, 0.344621) -> (0.0113363, 0.938673, 0.344621) normalizing out_k_direction: (-0.0377483, -0.343995, 0.938212) -> (-0.0377483, -0.343995, 0.938212) reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.nii.gz... TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.4.nii.gz... INFO: found /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.bvals, copying INFO: found /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.bvecs, converting to LAS mri_convert --frame 0 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.1.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb_orig_las.1.nii.gz mri_convert --frame 0 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.1.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb_orig_las.1.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.1.nii.gz... TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) keeping frame 0 writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb_orig_las.1.nii.gz... mri_convert --frame 0 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.2.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb_orig_las.2.nii.gz mri_convert --frame 0 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.2.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb_orig_las.2.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.2.nii.gz... TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) keeping frame 0 writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb_orig_las.2.nii.gz... mri_convert --frame 0 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.3.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb_orig_las.3.nii.gz mri_convert --frame 0 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.3.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb_orig_las.3.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.3.nii.gz... TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) keeping frame 0 writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb_orig_las.3.nii.gz... mri_convert --frame 0 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.4.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb_orig_las.4.nii.gz mri_convert --frame 0 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.4.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb_orig_las.4.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.4.nii.gz... TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) keeping frame 0 writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb_orig_las.4.nii.gz... mri_concat --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb_orig_las.1.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb_orig_las.2.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb_orig_las.3.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb_orig_las.4.nii.gz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb_orig_las.nii.gz ninputs = 4 Checking inputs nframestot = 4 Allocing output Done allocing nframes = 4 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb_orig_las.nii.gz cp -p /usr/pubsw/packages/fsl/6.0.4//src/topup/flirtsch/b02b0.cnf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri topup --imain=/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb_orig_las.nii.gz --datain=/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/acqp.txt --config=/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/b02b0.cnf --out=/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/topup --iout=/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb_topup.nii.gz mri_concat --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.1.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.2.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.3.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.4.nii.gz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.nii.gz ninputs = 4 Checking inputs nframestot = 398 Allocing output Done allocing nframes = 398 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.nii.gz cat /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.1.bvecs /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.2.bvecs /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.3.bvecs /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.4.bvecs > /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.bvecs cat /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.1.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.2.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.3.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.4.bvals > /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.bvals mri_concat --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb_topup.nii.gz --mean --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb_topup.nii.gz ninputs = 1 Checking inputs nframestot = 4 Allocing output Done allocing nframes = 4 Computing mean across frames Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb_topup.nii.gz bet /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb_topup.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb_topup_brain.nii.gz -m -f 0.3 eddy_openmp --imain=/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.nii.gz --mask=/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb_topup_brain_mask.nii.gz --bvecs=/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.bvecs --bvals=/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.bvals --acqp=/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/acqp.txt --index=/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/index.txt --data_is_shelled --topup=/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/topup --out=/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi xfmrot /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi.eddy_parameters /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.bvecs /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi.bvecs cp -p /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi.bvals mri_convert --in_like /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi.nii.gz mri_convert --in_like /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi.nii.gz reading info from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig_las.nii.gz... reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi.nii.gz... TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi.nii.gz... rm -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi.full.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi.bvecs.full /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi.bvals.full mri_convert --frame 0 1 17 33 49 65 81 99 100 116 132 148 164 180 198 199 215 231 247 263 279 298 299 315 331 347 363 379 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb.nii.gz mri_convert --frame 0 1 17 33 49 65 81 99 100 116 132 148 164 180 198 199 215 231 247 263 279 298 299 315 331 347 363 379 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi.nii.gz... TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) keeping frames 0 1 17 33 49 65 81 99 100 116 132 148 164 180 198 199 215 231 247 263 279 298 299 315 331 347 363 379 writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb.nii.gz... mri_concat --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb.nii.gz --mean --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb.nii.gz ninputs = 1 Checking inputs nframestot = 28 Allocing output Done allocing nframes = 28 Computing mean across frames Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb.nii.gz bet /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb_brain.nii.gz -m -f 0.3 mv -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb_brain_mask.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff #------------------------------------- #@# DWI set selection Wed Jul 12 17:31:20 EDT 2023 ln -sf dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/data.nii.gz ln -sf dwi.bvecs /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvecs ln -sf dwi.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvals #------------------------------------- #@# Image quality assessment Wed Jul 12 17:31:20 EDT 2023 /usr/local/freesurfer/7.3.2/bin/dmri_motion --mat /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi.eddy_parameters --dwi /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.nii.gz --bval /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.bvals --T 3179.785645 --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_motion.txt --outf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_motion_byvol.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2/bin/dmri_motion --mat /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi.eddy_parameters --dwi /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.nii.gz --bval /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.bvals --T 3179.785645 --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_motion.txt --outf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_motion_byvol.txt sysname Linux hostname curie.nmr.mgh.harvard.edu machine x86_64 user cy281 Output motion measure file: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_motion.txt Output frame-by-frame motion measure file: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_motion_byvol.txt Input transform file: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi.eddy_parameters Input DWI file(s): /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.nii.gz Input b-value table(s): /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.bvals Low-b image intensity threshold: 3179.79 Nominal diffusivity: 0.001 Loading DWI volume series from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.nii.gz Loading b-value table from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.1.bvals Computing within-volume head motion measures Loading DWI volume series from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.nii.gz Loading b-value table from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.2.bvals Computing within-volume head motion measures Loading DWI volume series from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.nii.gz Loading b-value table from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.3.bvals Computing within-volume head motion measures Loading DWI volume series from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.nii.gz Loading b-value table from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_orig.4.bvals Computing within-volume head motion measures Loading volume-to-baseline affine transformations Computing between-volume head motion measures INFO: Processed transforms for 398 volumes Done in 34.543 sec. dmri_motion done #------------------------------------- #@# Intra-subject registration Wed Jul 12 17:31:55 EDT 2023 bbregister --s sub-BANDA001 --init-fsl --dti --6 --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708 Log file is /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.log Wed Jul 12 17:31:55 EDT 2023 setenv SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2/bin/bbregister --s sub-BANDA001 --init-fsl --dti --6 --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta bbregister 7.3.2 Linux curie.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /usr/local/freesurfer/7.3.2 mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/template.nii mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/template.nii reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb.nii.gz... TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/template.nii... fslregister --s sub-BANDA001 --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/template.nii --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/reg.init.dat --niters 1 --maxangle 90 --tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/fslregister --dof 6 --fsvol brainmask.mgz --nobetmov Log file is /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/reg.init.dat.fslregister.log Wed Jul 12 17:31:55 EDT 2023 --s sub-BANDA001 --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/template.nii --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/reg.init.dat --niters 1 --maxangle 90 --tmp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/fslregister --dof 6 --fsvol brainmask.mgz --nobetmov fslregister 7.3.2 curie.nmr.mgh.harvard.edu Linux curie.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux nIters 1 -------------------------------------- /autofs/space/nyx_002/users/edann/test_tutorial mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/brainmask.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/fslregister/refvol.fslregister.nii mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/brainmask.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/fslregister/refvol.fslregister.nii reading from /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/brainmask.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 1.16415e-10, -1) k_ras = (0, 1, -5.82077e-11) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/fslregister/refvol.fslregister.nii... -------------------------------------- /autofs/space/nyx_002/users/edann/test_tutorial mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/template.nii /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/fslregister/movvol.fslregister.nii --frame 0 mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/template.nii /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/fslregister/movvol.fslregister.nii --frame 0 reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/template.nii... TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) keeping frame 0 writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/fslregister/movvol.fslregister.nii... Mov determinant is -3.375 /autofs/space/nyx_002/users/edann/test_tutorial tkregister2_cmdl --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/fslregister/movvol.fslregister.nii --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/fslregister/reg0.172749.dat --targ brainmask --fstarg --regheader --fslregout /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/reg.init.dat.fsl.mat0 --s sub-BANDA001 --noedit target volume brainmask movable volume /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/fslregister/movvol.fslregister.nii reg file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/fslregister/reg0.172749.dat LoadVol 0 ZeroCRAS 0 7.3.2 Diagnostic Level -1 INFO: loading target /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/brainmask.mgz Ttarg: -------------------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; INFO: loading movable /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/fslregister/movvol.fslregister.nii Tmov: -------------------- -1.50000 0.00000 0.00000 105.00000; 0.00000 0.00000 1.50000 -69.00000; 0.00000 -1.50000 0.00000 105.00000; 0.00000 0.00000 0.00000 1.00000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 0.99922 -0.02364 0.03153 -0.40044; -0.03775 -0.34400 0.93821 -34.65819; -0.01134 -0.93867 -0.34462 -10.80309; 0.00000 0.00000 0.00000 1.00000; --------------------------------------- ---- Input registration matrix -------- 0.99922 -0.02364 0.03153 -0.40044; -0.03775 -0.34400 0.93821 -34.65819; -0.01134 -0.93867 -0.34462 -10.80309; 0.00000 0.00000 0.00000 1.00000; Determinant 1 subject = sub-BANDA001 RegMat --------------------------- 0.99922 -0.02364 0.03153 -0.40044; -0.03775 -0.34400 0.93821 -34.65819; -0.01134 -0.93867 -0.34462 -10.80309; 0.00000 0.00000 0.00000 1.00000; FSLOUTPUTTYPE NIFTI tkreg2FSL: mov det = -3.375, ref det = -1 Wed Jul 12 17:31:56 EDT 2023 /autofs/space/nyx_002/users/edann/test_tutorial flirt.fsl -ref /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/fslregister/refvol.fslregister.nii -in /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/fslregister/fslmat0.trans.mat -schedule /usr/local/freesurfer/7.3.2/bin/fsl.5.0.2.xyztrans.sch -init /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/reg.init.dat.fsl.mat0 Wed Jul 12 17:32:04 EDT 2023 /autofs/space/nyx_002/users/edann/test_tutorial flirt.fsl -ref /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/fslregister/refvol.fslregister.nii -in /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/reg.init.dat.fsl.mat -init /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/fslregister/fslmat0.trans.mat -schedule /usr/local/freesurfer/7.3.2/bin/flirt.newdefault.20080811.sch tkregister2_cmdl --s sub-BANDA001 --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/template.nii --targ brainmask --fstarg --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/reg.init.dat --fslreg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/reg.init.dat.fsl.mat --noedit ---- FSL registration matrix -------- 0.99838 -0.01340 0.05526 21.96880; 0.04619 -0.37547 -0.92568 197.67000; 0.03315 0.92674 -0.37424 30.13210; 0.00000 0.00000 0.00000 1.00000; --------------------------------------- target volume brainmask movable volume /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/template.nii reg file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/reg.init.dat LoadVol 0 ZeroCRAS 0 7.3.2 Diagnostic Level -1 INFO: loading target /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/brainmask.mgz Ttarg: -------------------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; INFO: loading movable /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/template.nii Tmov: -------------------- -1.50000 0.00000 0.00000 105.00000; 0.00000 0.00000 1.50000 -69.00000; 0.00000 -1.50000 0.00000 105.00000; 0.00000 0.00000 0.00000 1.00000; mkheaderreg = 0, float2int = 0 FSLOUTPUTTYPE NIFTI fsl2TkReg: mov det = -3.375, ref det = -1 ---- Input registration matrix (computed) -------- 0.99838 -0.03315 0.04619 -0.88622; -0.05526 -0.37424 0.92568 -35.27473; -0.01340 -0.92674 -0.37547 -10.43552; 0.00000 0.00000 0.00000 1.00000; --------------------------------------- ---- Input registration matrix -------- 0.99838 -0.03315 0.04619 -0.88622; -0.05526 -0.37424 0.92568 -35.27473; -0.01340 -0.92674 -0.37547 -10.43552; 0.00000 0.00000 0.00000 1.00000; Determinant 1 subject = sub-BANDA001 RegMat --------------------------- 0.99838 -0.03315 0.04619 -0.88622; -0.05526 -0.37424 0.92568 -35.27473; -0.01340 -0.92674 -0.37547 -10.43552; 0.00000 0.00000 0.00000 1.00000; (standard_in) 1: illegal character: N (standard_in) 1: syntax error Started at Wed Jul 12 17:31:55 EDT 2023 Ended at Wed Jul 12 17:32:18 EDT 2023 fslregister Done To check results, run: tkregisterfv --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/template.nii --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/reg.init.dat --surf orig mri_segreg --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/template.nii --init-reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/reg.init.dat --out-reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 7.3.2 setenv SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs cd /autofs/space/nyx_002/users/edann/test_tutorial mri_segreg --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/template.nii --init-reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/reg.init.dat --out-reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 sysname Linux hostname curie.nmr.mgh.harvard.edu machine x86_64 user cy281 movvol /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/template.nii regfile /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/reg.init.dat subject sub-BANDA001 dof 6 outregfile /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/bbr.pass1.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 100 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000100 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1689919099 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 0.99838 -0.03315 0.04619 -0.88622; -0.05526 -0.37424 0.92568 -35.27473; -0.01340 -0.92674 -0.37547 -10.43552; 0.00000 0.00000 0.00000 1.00000; Loading mov ExcludeZeroVoxels 1 Reading in targ vol /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/orig.mgz Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness for GM Projecting RH Surfs Using lh.cortex.label Using rh.cortex.label Computing relative cost 0 -25.0 -25.0 -25.0 0.980762 1 -25.0 -25.0 25.0 0.970191 2 -25.0 25.0 -25.0 0.987668 3 -25.0 25.0 25.0 0.962302 4 25.0 -25.0 -25.0 0.938215 5 25.0 -25.0 25.0 0.957961 6 25.0 25.0 -25.0 0.954069 7 25.0 25.0 25.0 0.989181 REL: 8 0.240661 7.740349 0.967544 rel = 0.248734 Initial costs ---------------- Number of surface hits 2766 WM Intensity 5205.5431 +/- 1636.1933 Ctx Intensity 6289.6855 +/- 1749.2032 Pct Contrast 19.5256 +/- 18.6279 Cost 0.2407 RelCost 0.2487 ------------------------------------ Brute force preopt -4 4 4, n = 729 0 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.9515 0.9515 0.0 1 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.0000 0.9487 0.9487 0.0 2 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 0.9158 0.9158 0.0 7 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 0.0000 0.8479 0.8479 0.0 15 -4.0000 -4.0000 -4.0000 0.0000 4.0000 -4.0000 0.8342 0.8342 0.0 46 -4.0000 -4.0000 0.0000 4.0000 -4.0000 0.0000 0.7701 0.7701 0.0 254 0.0000 -4.0000 -4.0000 0.0000 -4.0000 4.0000 0.7635 0.7635 0.0 274 0.0000 -4.0000 0.0000 -4.0000 0.0000 0.0000 0.7108 0.7108 0.0 282 0.0000 -4.0000 0.0000 0.0000 0.0000 -4.0000 0.6997 0.6997 0.0 283 0.0000 -4.0000 0.0000 0.0000 0.0000 0.0000 0.6606 0.6606 0.0 363 0.0000 0.0000 0.0000 0.0000 0.0000 -4.0000 0.5747 0.5747 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.2407 0.2407 0.0 Brute Force -------------------------- Min cost was 0.240661 Number of iterations 729 Search time 1.051734 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 0 4 0 5 0 fs_powell::minimize nparams 6 maxfev 36 ftol 0.000100 linmin_xtol_ 0.001000 powell nthiter 0: fret = 0.240661 7 -0.041 0.000 0.000 0.000 0.000 0.000 0.2403778704 8 -0.057 0.000 0.000 0.000 0.000 0.000 0.2401698456 10 -0.139 0.000 0.000 0.000 0.000 0.000 0.2395636057 12 -0.125 0.000 0.000 0.000 0.000 0.000 0.2395459420 13 -0.128 0.000 0.000 0.000 0.000 0.000 0.2395457109 15 -0.127 0.000 0.000 0.000 0.000 0.000 0.2395456085 18 -0.127 -1.618 0.000 0.000 0.000 0.000 0.1754713386 19 -0.127 -1.114 0.000 0.000 0.000 0.000 0.1501167762 23 -0.127 -1.102 0.000 0.000 0.000 0.000 0.1500610764 24 -0.127 -1.066 0.000 0.000 0.000 0.000 0.1496924328 26 -0.127 -1.011 0.000 0.000 0.000 0.000 0.1488231526 28 -0.127 -0.995 0.000 0.000 0.000 0.000 0.1487775445 30 -0.127 -0.988 0.000 0.000 0.000 0.000 0.1487743843 31 -0.127 -0.991 0.000 0.000 0.000 0.000 0.1487720263 39 -0.127 -0.991 0.382 0.000 0.000 0.000 0.1472231233 40 -0.127 -0.991 0.211 0.000 0.000 0.000 0.1446634385 41 -0.127 -0.991 0.213 0.000 0.000 0.000 0.1446566159 42 -0.127 -0.991 0.227 0.000 0.000 0.000 0.1446147978 44 -0.127 -0.991 0.249 0.000 0.000 0.000 0.1445944434 45 -0.127 -0.991 0.245 0.000 0.000 0.000 0.1445939158 46 -0.127 -0.991 0.246 0.000 0.000 0.000 0.1445938420 49 -0.127 -0.991 0.246 1.000 0.000 0.000 0.1338384768 53 -0.127 -0.991 0.246 0.618 0.000 0.000 0.1168358204 54 -0.127 -0.991 0.246 0.499 0.000 0.000 0.1162021698 57 -0.127 -0.991 0.246 0.495 0.000 0.000 0.1162013181 66 -0.127 -0.991 0.246 0.495 0.115 0.000 0.1147554906 69 -0.127 -0.991 0.246 0.495 0.116 0.000 0.1147553076 79 -0.127 -0.991 0.246 0.495 0.116 -0.040 0.1146860755 80 -0.127 -0.991 0.246 0.495 0.116 -0.039 0.1146848116 81 -0.127 -0.991 0.246 0.495 0.116 -0.031 0.1146811263 83 -0.127 -0.991 0.246 0.495 0.116 -0.032 0.1146810269 powell nthiter 1: fret = 0.114681 92 -0.034 -0.991 0.246 0.495 0.116 -0.032 0.1142057240 93 -0.053 -0.991 0.246 0.495 0.116 -0.032 0.1141179428 94 -0.061 -0.991 0.246 0.495 0.116 -0.032 0.1141116856 104 -0.061 -0.990 0.246 0.495 0.116 -0.032 0.1141115484 112 -0.061 -0.990 0.221 0.495 0.116 -0.032 0.1139772150 113 -0.061 -0.990 0.199 0.495 0.116 -0.032 0.1138822234 116 -0.061 -0.990 0.153 0.495 0.116 -0.032 0.1137849594 118 -0.061 -0.990 0.163 0.495 0.116 -0.032 0.1137776773 119 -0.061 -0.990 0.162 0.495 0.116 -0.032 0.1137773864 120 -0.061 -0.990 0.161 0.495 0.116 -0.032 0.1137772954 128 -0.061 -0.990 0.161 0.545 0.116 -0.032 0.1132249637 129 -0.061 -0.990 0.161 0.568 0.116 -0.032 0.1131139751 130 -0.061 -0.990 0.161 0.586 0.116 -0.032 0.1131054439 131 -0.061 -0.990 0.161 0.579 0.116 -0.032 0.1131012543 132 -0.061 -0.990 0.161 0.580 0.116 -0.032 0.1131008629 142 -0.061 -0.990 0.161 0.580 0.121 -0.032 0.1130975955 143 -0.061 -0.990 0.161 0.580 0.120 -0.032 0.1130975644 151 -0.061 -0.990 0.161 0.580 0.120 -0.196 0.1126103996 155 -0.061 -0.990 0.161 0.580 0.120 -0.253 0.1122667823 156 -0.061 -0.990 0.161 0.580 0.120 -0.257 0.1122648273 157 -0.061 -0.990 0.161 0.580 0.120 -0.258 0.1122637108 160 -0.061 -0.990 0.161 0.580 0.120 -0.262 0.1122620483 162 -0.061 -0.990 0.161 0.580 0.120 -0.261 0.1122619366 powell nthiter 2: fret = 0.112262 171 -0.029 -0.990 0.161 0.580 0.120 -0.261 0.1114668092 172 0.027 -0.990 0.161 0.580 0.120 -0.261 0.1111941255 175 0.018 -0.990 0.161 0.580 0.120 -0.261 0.1111871415 176 0.019 -0.990 0.161 0.580 0.120 -0.261 0.1111869783 177 0.020 -0.990 0.161 0.580 0.120 -0.261 0.1111869743 187 0.020 -0.969 0.161 0.580 0.120 -0.261 0.1111704554 189 0.020 -0.977 0.161 0.580 0.120 -0.261 0.1111580882 191 0.020 -0.978 0.161 0.580 0.120 -0.261 0.1111580430 200 0.020 -0.978 0.227 0.580 0.120 -0.261 0.1110466412 201 0.020 -0.978 0.206 0.580 0.120 -0.261 0.1109850849 202 0.020 -0.978 0.202 0.580 0.120 -0.261 0.1109825056 203 0.020 -0.978 0.200 0.580 0.120 -0.261 0.1109818108 206 0.020 -0.978 0.199 0.580 0.120 -0.261 0.1109817508 215 0.020 -0.978 0.199 0.631 0.120 -0.261 0.1107572143 217 0.020 -0.978 0.199 0.620 0.120 -0.261 0.1107381698 218 0.020 -0.978 0.199 0.619 0.120 -0.261 0.1107379453 226 0.020 -0.978 0.199 0.619 0.052 -0.261 0.1107071263 227 0.020 -0.978 0.199 0.619 0.084 -0.261 0.1104228506 229 0.020 -0.978 0.199 0.619 0.083 -0.261 0.1104227765 242 0.020 -0.978 0.199 0.619 0.083 -0.267 0.1104179976 powell nthiter 3: fret = 0.110418 253 0.041 -0.978 0.199 0.619 0.083 -0.267 0.1104110431 254 0.031 -0.978 0.199 0.619 0.083 -0.267 0.1103983031 255 0.032 -0.978 0.199 0.619 0.083 -0.267 0.1103979516 256 0.033 -0.978 0.199 0.619 0.083 -0.267 0.1103967514 258 0.034 -0.978 0.199 0.619 0.083 -0.267 0.1103961434 266 0.034 -0.983 0.199 0.619 0.083 -0.267 0.1103926543 276 0.034 -0.983 0.209 0.619 0.083 -0.267 0.1103824824 277 0.034 -0.983 0.210 0.619 0.083 -0.267 0.1103824440 286 0.034 -0.983 0.210 0.601 0.083 -0.267 0.1103422572 288 0.034 -0.983 0.210 0.602 0.083 -0.267 0.1103421824 301 0.034 -0.983 0.210 0.602 0.082 -0.267 0.1103419201 311 0.034 -0.983 0.210 0.602 0.082 -0.280 0.1103346714 312 0.034 -0.983 0.210 0.602 0.082 -0.275 0.1103329897 313 0.034 -0.983 0.210 0.602 0.082 -0.276 0.1103328690 powell nthiter 4: fret = 0.110333 325 0.033 -0.983 0.210 0.602 0.082 -0.276 0.1103326890 336 0.033 -0.981 0.210 0.602 0.082 -0.276 0.1103315993 347 0.033 -0.981 0.212 0.602 0.082 -0.276 0.1103313933 357 0.033 -0.981 0.212 0.601 0.082 -0.276 0.1103304349 358 0.033 -0.981 0.212 0.598 0.082 -0.276 0.1103287841 371 0.033 -0.981 0.212 0.598 0.077 -0.276 0.1103212071 383 0.033 -0.981 0.212 0.598 0.077 -0.280 0.1103208516 384 0.033 -0.981 0.212 0.598 0.077 -0.279 0.1103206119 powell nthiter 5: fret = 0.110321 395 0.034 -0.981 0.212 0.598 0.077 -0.279 0.1103201527 405 0.034 -0.982 0.212 0.598 0.077 -0.279 0.1103195410 415 0.034 -0.982 0.214 0.598 0.077 -0.279 0.1103191727 424 0.034 -0.982 0.214 0.594 0.077 -0.279 0.1103155769 425 0.034 -0.982 0.214 0.592 0.077 -0.279 0.1103155257 427 0.034 -0.982 0.214 0.593 0.077 -0.279 0.1103154058 436 0.034 -0.982 0.214 0.593 0.074 -0.279 0.1103147765 438 0.034 -0.982 0.214 0.593 0.075 -0.279 0.1103145825 449 0.034 -0.982 0.214 0.593 0.075 -0.280 0.1103143365 Powell done niters = 5 Computing relative cost 0 -25.0 -25.0 -25.0 0.971812 1 -25.0 -25.0 25.0 0.968981 2 -25.0 25.0 -25.0 0.978447 3 -25.0 25.0 25.0 0.966580 4 25.0 -25.0 -25.0 0.952815 5 25.0 -25.0 25.0 0.961669 6 25.0 25.0 -25.0 0.955033 7 25.0 25.0 25.0 0.992522 REL: 8 0.110314 7.747860 0.968482 rel = 0.113904 Number of iterations 5 Min cost was 0.110314 Number of FunctionCalls 451 TolPowell 0.000100 nMaxItersPowell 36 OptimizationTime 0.669758 sec Parameters at optimum (transmm) 0.03444 -0.98232 0.21360 Parameters at optimum (rotdeg) 0.59301 0.07530 -0.27958 Final costs ---------------- Number of surface hits 2766 WM Intensity 5090.5549 +/- 1565.4925 Ctx Intensity 6294.7578 +/- 1709.6565 Pct Contrast 21.7739 +/- 17.1686 Cost 0.1103 RelCost 0.2487 Reg at min cost was 0.99808 -0.03616 0.05025 -1.03755; -0.05999 -0.36446 0.92929 -36.14234; -0.01529 -0.93052 -0.36593 -10.58528; 0.00000 0.00000 0.00000 1.00000; Writing optimal reg to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/bbr.pass1.dat, type = 14 Original Reg 0.99838 -0.03315 0.04619 -0.88622; -0.05526 -0.37424 0.92568 -35.27473; -0.01340 -0.92674 -0.37547 -10.43552; 0.00000 0.00000 0.00000 1.00000; Original Reg - Optimal Reg 0.00030 0.00300 -0.00405 0.15133; 0.00473 -0.00978 -0.00360 0.86761; 0.00188 0.00378 -0.00954 0.14976; 0.00000 0.00000 0.00000 0.00000; Computing change in lh position LH rmsDiffMean 0.976274 Computing change in rh position Surface-RMS-Diff-mm 1.083035 0.421375 1.928811 mri_segreg done mri_segreg --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/template.nii --init-reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/bbr.pass1.dat --out-reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.dat --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.dat.mincost --dof 6 --nmax 36 --param /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.dat.param --surf white --brute -0.1 0.1 0.1 --cur-reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 7.3.2 setenv SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs cd /autofs/space/nyx_002/users/edann/test_tutorial mri_segreg --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/template.nii --init-reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/bbr.pass1.dat --out-reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.dat --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.dat.mincost --dof 6 --nmax 36 --param /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.dat.param --surf white --brute -0.1 0.1 0.1 --cur-reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 sysname Linux hostname curie.nmr.mgh.harvard.edu machine x86_64 user cy281 movvol /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/template.nii regfile /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/tmp.bbregister.172708/bbr.pass1.dat subject sub-BANDA001 dof 6 outregfile /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 1 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000000 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1689779096 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 0.99808 -0.03616 0.05025 -1.03755; -0.05999 -0.36446 0.92929 -36.14234; -0.01529 -0.93052 -0.36593 -10.58528; 0.00000 0.00000 0.00000 1.00000; Loading mov ExcludeZeroVoxels 1 Reading in targ vol /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/orig.mgz Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness for GM Projecting RH Surfs Using lh.cortex.label Using rh.cortex.label Computing relative cost 0 -25.0 -25.0 -25.0 0.973105 1 -25.0 -25.0 25.0 0.972602 2 -25.0 25.0 -25.0 0.961134 3 -25.0 25.0 25.0 0.957077 4 25.0 -25.0 -25.0 0.984348 5 25.0 -25.0 25.0 0.984012 6 25.0 25.0 -25.0 0.964715 7 25.0 25.0 25.0 0.985482 REL: 8 0.109932 7.782475 0.972809 rel = 0.113004 Initial costs ---------------- Number of surface hits 276186 WM Intensity 5070.3685 +/- 1579.2747 Ctx Intensity 6272.5171 +/- 1691.3218 Pct Contrast 22.0038 +/- 16.7939 Cost 0.1099 RelCost 0.1130 ------------------------------------ Brute force preopt -0.1 0.1 0.1, n = 729 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.1158 0.1158 0.0 1 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.1148 0.1148 0.0 2 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.1000 0.1141 0.1141 0.0 10 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 0.0000 0.1136 0.1136 0.0 37 -0.1000 -0.1000 0.0000 0.0000 -0.1000 0.0000 0.1135 0.1135 0.0 91 -0.1000 0.0000 -0.1000 0.0000 -0.1000 0.0000 0.1126 0.1126 0.0 92 -0.1000 0.0000 -0.1000 0.0000 -0.1000 0.1000 0.1125 0.1125 0.0 94 -0.1000 0.0000 -0.1000 0.0000 0.0000 0.0000 0.1123 0.1123 0.0 283 0.0000 -0.1000 0.0000 0.0000 0.0000 0.0000 0.1120 0.1120 0.0 337 0.0000 0.0000 -0.1000 0.0000 0.0000 0.0000 0.1112 0.1112 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1103 0.1103 0.0 Brute Force -------------------------- Min cost was 0.110314 Number of iterations 729 Search time 1.041267 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 0 4 0 5 0 fs_powell::minimize nparams 6 maxfev 36 ftol 0.000000 linmin_xtol_ 0.001000 powell nthiter 0: fret = 0.109932 7 -0.089 0.000 0.000 0.000 0.000 0.000 0.1092750508 8 -0.075 0.000 0.000 0.000 0.000 0.000 0.1092481487 9 -0.074 0.000 0.000 0.000 0.000 0.000 0.1092479998 17 -0.074 0.043 0.000 0.000 0.000 0.000 0.1091961620 18 -0.074 0.028 0.000 0.000 0.000 0.000 0.1091792719 27 -0.074 0.028 -0.059 0.000 0.000 0.000 0.1088302985 28 -0.074 0.028 -0.061 0.000 0.000 0.000 0.1088270344 29 -0.074 0.028 -0.069 0.000 0.000 0.000 0.1088226958 39 -0.074 0.028 -0.069 -0.004 0.000 0.000 0.1088220631 40 -0.074 0.028 -0.069 -0.003 0.000 0.000 0.1088219827 48 -0.074 0.028 -0.069 -0.003 -0.009 0.000 0.1088105315 49 -0.074 0.028 -0.069 -0.003 -0.011 0.000 0.1088097963 50 -0.074 0.028 -0.069 -0.003 -0.012 0.000 0.1088097425 58 -0.074 0.028 -0.069 -0.003 -0.012 0.076 0.1085508957 59 -0.074 0.028 -0.069 -0.003 -0.012 0.069 0.1085505316 60 -0.074 0.028 -0.069 -0.003 -0.012 0.072 0.1085501785 61 -0.074 0.028 -0.069 -0.003 -0.012 0.071 0.1085500633 powell nthiter 1: fret = 0.108550 70 -0.073 0.028 -0.069 -0.003 -0.012 0.071 0.1085499563 79 -0.073 0.025 -0.069 -0.003 -0.012 0.071 0.1085491736 80 -0.073 0.024 -0.069 -0.003 -0.012 0.071 0.1085491092 89 -0.073 0.024 -0.072 -0.003 -0.012 0.071 0.1085479148 90 -0.073 0.024 -0.073 -0.003 -0.012 0.071 0.1085478667 99 -0.073 0.024 -0.073 -0.002 -0.012 0.071 0.1085478275 100 -0.073 0.024 -0.073 -0.001 -0.012 0.071 0.1085477728 114 -0.073 0.024 -0.073 -0.001 -0.008 0.071 0.1085455580 123 -0.073 0.024 -0.073 -0.001 -0.008 0.074 0.1085452772 powell nthiter 2: fret = 0.108545 134 -0.074 0.024 -0.073 -0.001 -0.008 0.074 0.1085451603 171 -0.074 0.024 -0.073 -0.001 -0.007 0.074 0.1085451566 powell nthiter 3: fret = 0.108545 Powell done niters = 3 Computing relative cost 0 -25.0 -25.0 -25.0 0.972904 1 -25.0 -25.0 25.0 0.972701 2 -25.0 25.0 -25.0 0.961375 3 -25.0 25.0 25.0 0.957526 4 25.0 -25.0 -25.0 0.983833 5 25.0 -25.0 25.0 0.984269 6 25.0 25.0 -25.0 0.964093 7 25.0 25.0 25.0 0.983964 REL: 8 0.108545 7.780665 0.972583 rel = 0.111605 Number of iterations 3 Min cost was 0.108545 Number of FunctionCalls 236 TolPowell 0.000000 nMaxItersPowell 36 OptimizationTime 14.619716 sec Parameters at optimum (transmm) -0.07377 0.02446 -0.07282 Parameters at optimum (rotdeg) -0.00066 -0.00677 0.07369 Final costs ---------------- Number of surface hits 276186 WM Intensity 5070.7592 +/- 1575.3173 Ctx Intensity 6273.8557 +/- 1690.0131 Pct Contrast 22.0078 +/- 16.7009 Cost 0.1085 RelCost 0.1130 Reg at min cost was 0.99816 -0.03558 0.04910 -1.06358; -0.05870 -0.36451 0.92935 -36.11930; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; Writing optimal reg to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.dat, type = 14 Original Reg 0.99808 -0.03616 0.05025 -1.03755; -0.05999 -0.36446 0.92929 -36.14234; -0.01529 -0.93052 -0.36593 -10.58528; 0.00000 0.00000 0.00000 1.00000; Original Reg - Optimal Reg -0.00008 -0.00058 0.00115 0.02603; -0.00128 0.00006 -0.00006 -0.02304; -0.00012 0.00000 0.00000 0.07252; 0.00000 0.00000 0.00000 0.00000; Computing change in lh position LH rmsDiffMean 0.112545 Computing change in rh position Surface-RMS-Diff-mm 0.117294 0.022460 0.168350 mri_segreg done MinCost: 0.108545 5070.759162 6273.855728 22.007802 tkregister2_cmdl --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.dat --noedit --ltaout /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb.nii.gz reg file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.dat LoadVol 0 ZeroCRAS 0 7.3.2 Diagnostic Level -1 ---- Input registration matrix -------- 0.99816 -0.03558 0.04910 -1.06358; -0.05870 -0.36451 0.92935 -36.11930; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; float2int = 0 --------------------------------------- INFO: loading target /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/orig.mgz Ttarg: -------------------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; INFO: loading movable /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb.nii.gz Tmov: -------------------- -1.50000 0.00000 0.00000 105.00000; 0.00000 0.00000 1.50000 -69.00000; 0.00000 -1.50000 0.00000 105.00000; 0.00000 0.00000 0.00000 1.00000; mkheaderreg = 0, float2int = 0 ---- Input registration matrix -------- 0.99816 -0.03558 0.04910 -1.06358; -0.05870 -0.36451 0.92935 -36.11930; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; Determinant 1 subject = sub-BANDA001 RegMat --------------------------- 0.99816 -0.03558 0.04910 -1.06358; -0.05870 -0.36451 0.92935 -36.11930; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; Cleaning up Started at Wed Jul 12 17:31:55 EDT 2023 Ended at Wed Jul 12 17:32:43 EDT 2023 BBR-Run-Time-Sec 48 bbregister Done To check results, run: tkregisterfv --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --surfs --sd /autofs/space/nyx_002/users/edann/test_tutorial/fs lta_convert --inlta /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --invert --outlta /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2diff.bbr.lta 7.3.2 --inlta: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta input LTA transform. --invert: will invert transform. --outlta: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2diff.bbr.lta output LTA. LTA read, type : 1 0.99977 0.01083 -0.01837 -0.08176; -0.01124 0.99969 -0.02244 -0.74747; 0.01812 0.02264 0.99958 0.63538; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2diff.bbr.lta... lta_convert successful. mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/aparc+aseg.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/aparc+aseg.nii.gz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/aparc+aseg.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/aparc+aseg.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/aparc+aseg.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 1.16415e-10, -1) k_ras = (0, 1, -5.82077e-11) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/aparc+aseg.nii.gz... mri_binarize --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/aparc+aseg.nii.gz --min .5 --dilate 4 --erode 2 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/aparc+aseg_mask.nii.gz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/aparc+aseg.nii.gz --min .5 --dilate 4 --erode 2 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/aparc+aseg_mask.nii.gz sysname Linux hostname curie.nmr.mgh.harvard.edu machine x86_64 user cy281 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/aparc+aseg.nii.gz frame 0 nErode3d 2 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/aparc+aseg_mask.nii.gz Binarizing based on threshold min 0.5 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1317245 values in range Dilating 4 voxels in 3d Eroding 2 voxels in 3d Counting number of voxels in first frame Found 1628225 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/aparc+aseg_mask.nii.gz Count: 1628225 1628225.000000 16777216 9.704977 mri_binarize done mri_binarize --i /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/aparc+aseg.mgz --match 2 41 7 46 172 177 77 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/White-Matter.nii.gz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --i /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/aparc+aseg.mgz --match 2 41 7 46 172 177 77 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/White-Matter.nii.gz sysname Linux hostname curie.nmr.mgh.harvard.edu machine x86_64 user cy281 input /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/White-Matter.nii.gz Binarizing based on matching values nMatch 7 0 2 1 41 2 7 3 46 4 172 5 177 6 77 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 471113 values in range Counting number of voxels in first frame Found 471112 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/White-Matter.nii.gz Count: 471112 471112.000000 16777216 2.808046 mri_binarize done mri_binarize --i /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/aparc+aseg.mgz --match 2 41 7 46 172 177 77 28 60 16 173 174 175 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/White-Matter++.nii.gz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --i /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/aparc+aseg.mgz --match 2 41 7 46 172 177 77 28 60 16 173 174 175 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/White-Matter++.nii.gz sysname Linux hostname curie.nmr.mgh.harvard.edu machine x86_64 user cy281 input /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/White-Matter++.nii.gz Binarizing based on matching values nMatch 13 0 2 1 41 2 7 3 46 4 172 5 177 6 77 7 28 8 60 9 16 10 173 11 174 12 175 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 502459 values in range Counting number of voxels in first frame Found 502458 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/White-Matter++.nii.gz Count: 502458 502458.000000 16777216 2.994883 mri_binarize done mri_convert -at /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2diff.bbr.lta -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/aparc+aseg.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/aparc+aseg.bbr.nii.gz mri_convert -at /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2diff.bbr.lta -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/aparc+aseg.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/aparc+aseg.bbr.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/aparc+aseg.nii.gz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 1.16415e-10, -1) k_ras = (0, 1, -5.82077e-11) INFO: Reading transformation from file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2diff.bbr.lta... Reading transform with LTAreadEx() INFO: Applying transformation from file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2diff.bbr.lta... --------------------------------- INFO: Transform Matrix (linear_ras_to_ras) 0.99977 -0.01124 0.01812 0.06182; 0.01083 0.99969 0.02264 0.73373; -0.01837 -0.02244 0.99958 -0.65339; 0.00000 0.00000 0.00000 1.00000; --------------------------------- Applying LTAtransformInterp (resample_type 0) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/aparc+aseg.bbr.nii.gz... mri_convert -at /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2diff.bbr.lta -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/aparc+aseg_mask.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz mri_convert -at /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2diff.bbr.lta -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/aparc+aseg_mask.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/aparc+aseg_mask.nii.gz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 1.16415e-10, -1) k_ras = (0, 1, -5.82077e-11) INFO: Reading transformation from file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2diff.bbr.lta... Reading transform with LTAreadEx() INFO: Applying transformation from file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2diff.bbr.lta... --------------------------------- INFO: Transform Matrix (linear_ras_to_ras) 0.99977 -0.01124 0.01812 0.06182; 0.01083 0.99969 0.02264 0.73373; -0.01837 -0.02244 0.99958 -0.65339; 0.00000 0.00000 0.00000 1.00000; --------------------------------- Applying LTAtransformInterp (resample_type 0) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz... mri_convert -at /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2diff.bbr.lta -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/White-Matter.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/White-Matter.bbr.nii.gz mri_convert -at /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2diff.bbr.lta -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/White-Matter.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/White-Matter.bbr.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/White-Matter.nii.gz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 1.16415e-10, -1) k_ras = (0, 1, -5.82077e-11) INFO: Reading transformation from file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2diff.bbr.lta... Reading transform with LTAreadEx() INFO: Applying transformation from file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2diff.bbr.lta... --------------------------------- INFO: Transform Matrix (linear_ras_to_ras) 0.99977 -0.01124 0.01812 0.06182; 0.01083 0.99969 0.02264 0.73373; -0.01837 -0.02244 0.99958 -0.65339; 0.00000 0.00000 0.00000 1.00000; --------------------------------- Applying LTAtransformInterp (resample_type 0) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/White-Matter.bbr.nii.gz... mri_convert -at /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2diff.bbr.lta -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/White-Matter++.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/White-Matter++.bbr.nii.gz mri_convert -at /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2diff.bbr.lta -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/White-Matter++.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/White-Matter++.bbr.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/White-Matter++.nii.gz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 1.16415e-10, -1) k_ras = (0, 1, -5.82077e-11) INFO: Reading transformation from file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2diff.bbr.lta... Reading transform with LTAreadEx() INFO: Applying transformation from file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2diff.bbr.lta... --------------------------------- INFO: Transform Matrix (linear_ras_to_ras) 0.99977 -0.01124 0.01812 0.06182; 0.01083 0.99969 0.02264 0.73373; -0.01837 -0.02244 0.99958 -0.65339; 0.00000 0.00000 0.00000 1.00000; --------------------------------- Applying LTAtransformInterp (resample_type 0) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/White-Matter++.bbr.nii.gz... mri_convert -at /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2diff.bbr.lta -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/aparc+aseg+thalnuc.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/aparc+aseg+thalnuc.bbr.nii.gz mri_convert -at /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2diff.bbr.lta -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/aparc+aseg+thalnuc.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/aparc+aseg+thalnuc.bbr.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/aparc+aseg+thalnuc.nii.gz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 1.16415e-10, -1) k_ras = (0, 1, -5.82077e-11) INFO: Reading transformation from file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2diff.bbr.lta... Reading transform with LTAreadEx() INFO: Applying transformation from file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2diff.bbr.lta... --------------------------------- INFO: Transform Matrix (linear_ras_to_ras) 0.99977 -0.01124 0.01812 0.06182; 0.01083 0.99969 0.02264 0.73373; -0.01837 -0.02244 0.99958 -0.65339; 0.00000 0.00000 0.00000 1.00000; --------------------------------- Applying LTAtransformInterp (resample_type 0) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/aparc+aseg+thalnuc.bbr.nii.gz... fslstats -t /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi.nii.gz -k /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/White-Matter++.bbr.nii.gz -m -s | awk '{print $1/$2}' > /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dwi_snr.txt mri_convert -at /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lowb_brain_mask.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/lowb_brain_mask.bbr.nii.gz mri_convert -at /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta -rt nearest /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lowb_brain_mask.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/lowb_brain_mask.bbr.nii.gz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lowb_brain_mask.nii.gz... TR=3230.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) INFO: Reading transformation from file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta... Reading transform with LTAreadEx() INFO: Applying transformation from file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta... --------------------------------- INFO: Transform Matrix (linear_vox_to_vox) 1.49724 -0.02275 0.08805 21.95568; 0.07364 -0.54890 -1.39402 195.67316; 0.05337 1.39578 -0.54677 28.59024; 0.00000 0.00000 0.00000 1.00000; --------------------------------- Applying LTAtransformInterp (resample_type 0) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/lowb_brain_mask.bbr.nii.gz... #------------------------------------- #@# Tensor fit Wed Jul 12 17:33:56 EDT 2023 dtifit -k /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/data.nii.gz -m /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz -r /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvecs -b /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvals -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit 0 140 0 140 0 92 0 slices processed 1 slices processed 2 slices processed 3 slices processed 4 slices processed 5 slices processed 6 slices processed 7 slices processed 8 slices processed 9 slices processed 10 slices processed 11 slices processed 12 slices processed 13 slices processed 14 slices processed 15 slices processed 16 slices processed 17 slices processed 18 slices processed 19 slices processed 20 slices processed 21 slices processed 22 slices processed 23 slices processed 24 slices processed 25 slices processed 26 slices processed 27 slices processed 28 slices processed 29 slices processed 30 slices processed 31 slices processed 32 slices processed 33 slices processed 34 slices processed 35 slices processed 36 slices processed 37 slices processed 38 slices processed 39 slices processed 40 slices processed 41 slices processed 42 slices processed 43 slices processed 44 slices processed 45 slices processed 46 slices processed 47 slices processed 48 slices processed 49 slices processed 50 slices processed 51 slices processed 52 slices processed 53 slices processed 54 slices processed 55 slices processed 56 slices processed 57 slices processed 58 slices processed 59 slices processed 60 slices processed 61 slices processed 62 slices processed 63 slices processed 64 slices processed 65 slices processed 66 slices processed 67 slices processed 68 slices processed 69 slices processed 70 slices processed 71 slices processed 72 slices processed 73 slices processed 74 slices processed 75 slices processed 76 slices processed 77 slices processed 78 slices processed 79 slices processed 80 slices processed 81 slices processed 82 slices processed 83 slices processed 84 slices processed 85 slices processed 86 slices processed 87 slices processed 88 slices processed 89 slices processed 90 slices processed 91 slices processed #------------------------------------- #@# Inter-subject registration Wed Jul 12 17:35:21 EDT 2023 /usr/pubsw/packages/ANTS/2.3.4/bin/antsRegistrationSyNQuick.sh -d 3 -m /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz -f /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn -------------------------------------------------------------------------------------- Mapping parameters -------------------------------------------------------------------------------------- ANTSPATH is /usr/pubsw/packages/ANTS/2.3.4/bin Dimensionality: 3 Output name prefix: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn Fixed images: /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz Moving images: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz Mask images: Initial transforms: Number of threads: 1 Spline distance: 26 Transform type: s MI histogram bins: 32 Precision: d Use histogram matching 0 ====================================================================================== antsRegistration call: -------------------------------------------------------------------------------------- /usr/pubsw/packages/ANTS/2.3.4/bin/antsRegistration --verbose 1 --dimensionality 3 --float 0 --collapse-output-transforms 1 --output [ /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn,/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2synWarped.nii.gz,/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2synInverseWarped.nii.gz ] --interpolation Linear --use-histogram-matching 0 --winsorize-image-intensities [ 0.005,0.995 ] --initial-moving-transform [ /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz,/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz,1 ] --transform Rigid[ 0.1 ] --metric MI[ /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz,/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform Affine[ 0.1 ] --metric MI[ /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz,/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz,1,32,Regular,0.25 ] --convergence [ 1000x500x250x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox --transform SyN[ 0.1,3,0 ] --metric MI[ /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz,/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz,1,32] --convergence [ 100x70x50x0,1e-6,10 ] --shrink-factors 8x4x2x1 --smoothing-sigmas 3x2x1x0vox -------------------------------------------------------------------------------------- All_Command_lines_OK Using double precision for computations. ============================================================================= The composite transform comprises the following transforms (in order): 1. Center of mass alignment using fixed image: /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz and moving image: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz (type = Euler3DTransform) ============================================================================= number of levels = 4 number of levels = 4 number of levels = 4 fixed image: /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz moving image: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz fixed image: /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz moving image: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz fixed image: /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz moving image: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz Dimension = 3 Number of stages = 3 Use Histogram Matching false Winsorize image intensities true Lower quantile = 0.005 Upper quantile = 0.995 Stage 1 State Image metric = Mattes Fixed image = Image (0x3aa2ab0) RTTI typeinfo: itk::Image Reference Count: 2 Modified Time: 1736 Debug: Off Object Name: Observers: none Source: (none) Source output name: (none) Release Data: Off Data Released: False Global Release Data: Off PipelineMTime: 0 UpdateMTime: 1519 RealTimeStamp: 0 seconds LargestPossibleRegion: Dimension: 3 Index: [0, 0, 0] Size: [122, 146, 122] BufferedRegion: Dimension: 3 Index: [0, 0, 0] Size: [122, 146, 122] RequestedRegion: Dimension: 3 Index: [0, 0, 0] Size: [122, 146, 122] Spacing: [1.5, 1.5, 1.5] Origin: [-90.5, 126.5, -72.5] Direction: 1 0 0 0 -1 0 0 0 1 IndexToPointMatrix: 1.5 0 0 0 -1.5 0 0 0 1.5 PointToIndexMatrix: 0.666667 0 0 0 -0.666667 0 0 0 0.666667 Inverse Direction: 1 0 0 0 -1 0 0 0 1 PixelContainer: ImportImageContainer (0x3a880e0) RTTI typeinfo: itk::ImportImageContainer Reference Count: 1 Modified Time: 1516 Debug: Off Object Name: Observers: none Pointer: 0x3aad2f0 Container manages memory: true Size: 2173064 Capacity: 2173064 Moving image = Image (0x3a9ab10) RTTI typeinfo: itk::Image Reference Count: 2 Modified Time: 1737 Debug: Off Object Name: Observers: none Source: (none) Source output name: (none) Release Data: Off Data Released: False Global Release Data: Off PipelineMTime: 0 UpdateMTime: 1734 RealTimeStamp: 0 seconds LargestPossibleRegion: Dimension: 3 Index: [0, 0, 0] Size: [140, 140, 92] BufferedRegion: Dimension: 3 Index: [0, 0, 0] Size: [140, 140, 92] RequestedRegion: Dimension: 3 Index: [0, 0, 0] Size: [140, 140, 92] Spacing: [1.5, 1.5, 1.5] Origin: [-109.766, 67.572, -86.0385] Direction: 0.999223 -0.0113363 0.0377483 -0.0236447 -0.938674 0.343995 -0.0315337 0.34462 0.938212 IndexToPointMatrix: 1.49883 -0.0170045 0.0566225 -0.0354671 -1.40801 0.515993 -0.0473006 0.516931 1.40732 PointToIndexMatrix: 0.666149 -0.0157631 -0.0210225 -0.00755755 -0.625782 0.229747 0.0251656 0.22933 0.625475 Inverse Direction: 0.999223 -0.0236447 -0.0315337 -0.0113363 -0.938674 0.34462 0.0377483 0.343995 0.938212 PixelContainer: ImportImageContainer (0x3aa7bf0) RTTI typeinfo: itk::ImportImageContainer Reference Count: 1 Modified Time: 1731 Debug: Off Object Name: Observers: none Pointer: 0x4b41740 Container manages memory: true Size: 1803200 Capacity: 1803200 Weighting = 1 Sampling strategy = regular Number of bins = 32 Radius = 4 Sampling percentage = 0.25 Transform = Rigid Gradient step = 0.1 Update field sigma (voxel space) = 0 Total field sigma (voxel space) = 0 Update field time sigma = 0 Total field time sigma = 0 Number of time indices = 0 Number of time point samples = 0 Stage 2 State Image metric = Mattes Fixed image = Image (0x3aa2020) RTTI typeinfo: itk::Image Reference Count: 2 Modified Time: 2168 Debug: Off Object Name: Observers: none Source: (none) Source output name: (none) Release Data: Off Data Released: False Global Release Data: Off PipelineMTime: 0 UpdateMTime: 1951 RealTimeStamp: 0 seconds LargestPossibleRegion: Dimension: 3 Index: [0, 0, 0] Size: [122, 146, 122] BufferedRegion: Dimension: 3 Index: [0, 0, 0] Size: [122, 146, 122] RequestedRegion: Dimension: 3 Index: [0, 0, 0] Size: [122, 146, 122] Spacing: [1.5, 1.5, 1.5] Origin: [-90.5, 126.5, -72.5] Direction: 1 0 0 0 -1 0 0 0 1 IndexToPointMatrix: 1.5 0 0 0 -1.5 0 0 0 1.5 PointToIndexMatrix: 0.666667 0 0 0 -0.666667 0 0 0 0.666667 Inverse Direction: 1 0 0 0 -1 0 0 0 1 PixelContainer: ImportImageContainer (0x3a9e720) RTTI typeinfo: itk::ImportImageContainer Reference Count: 1 Modified Time: 1948 Debug: Off Object Name: Observers: none Pointer: 0x5908d20 Container manages memory: true Size: 2173064 Capacity: 2173064 Moving image = Image (0x5907f20) RTTI typeinfo: itk::Image Reference Count: 2 Modified Time: 2169 Debug: Off Object Name: Observers: none Source: (none) Source output name: (none) Release Data: Off Data Released: False Global Release Data: Off PipelineMTime: 0 UpdateMTime: 2166 RealTimeStamp: 0 seconds LargestPossibleRegion: Dimension: 3 Index: [0, 0, 0] Size: [140, 140, 92] BufferedRegion: Dimension: 3 Index: [0, 0, 0] Size: [140, 140, 92] RequestedRegion: Dimension: 3 Index: [0, 0, 0] Size: [140, 140, 92] Spacing: [1.5, 1.5, 1.5] Origin: [-109.766, 67.572, -86.0385] Direction: 0.999223 -0.0113363 0.0377483 -0.0236447 -0.938674 0.343995 -0.0315337 0.34462 0.938212 IndexToPointMatrix: 1.49883 -0.0170045 0.0566225 -0.0354671 -1.40801 0.515993 -0.0473006 0.516931 1.40732 PointToIndexMatrix: 0.666149 -0.0157631 -0.0210225 -0.00755755 -0.625782 0.229747 0.0251656 0.22933 0.625475 Inverse Direction: 0.999223 -0.0236447 -0.0315337 -0.0113363 -0.938674 0.34462 0.0377483 0.343995 0.938212 PixelContainer: ImportImageContainer (0x5904e40) RTTI typeinfo: itk::ImportImageContainer Reference Count: 1 Modified Time: 2163 Debug: Off Object Name: Observers: none Pointer: 0x699fea0 Container manages memory: true Size: 1803200 Capacity: 1803200 Weighting = 1 Sampling strategy = regular Number of bins = 32 Radius = 4 Sampling percentage = 0.25 Transform = Affine Gradient step = 0.1 Update field sigma (voxel space) = 0 Total field sigma (voxel space) = 0 Update field time sigma = 0 Total field time sigma = 0 Number of time indices = 0 Number of time point samples = 0 Stage 3 State Image metric = Mattes Fixed image = Image (0x5906fb0) RTTI typeinfo: itk::Image Reference Count: 2 Modified Time: 2600 Debug: Off Object Name: Observers: none Source: (none) Source output name: (none) Release Data: Off Data Released: False Global Release Data: Off PipelineMTime: 0 UpdateMTime: 2383 RealTimeStamp: 0 seconds LargestPossibleRegion: Dimension: 3 Index: [0, 0, 0] Size: [122, 146, 122] BufferedRegion: Dimension: 3 Index: [0, 0, 0] Size: [122, 146, 122] RequestedRegion: Dimension: 3 Index: [0, 0, 0] Size: [122, 146, 122] Spacing: [1.5, 1.5, 1.5] Origin: [-90.5, 126.5, -72.5] Direction: 1 0 0 0 -1 0 0 0 1 IndexToPointMatrix: 1.5 0 0 0 -1.5 0 0 0 1.5 PointToIndexMatrix: 0.666667 0 0 0 -0.666667 0 0 0 0.666667 Inverse Direction: 1 0 0 0 -1 0 0 0 1 PixelContainer: ImportImageContainer (0x5906ea0) RTTI typeinfo: itk::ImportImageContainer Reference Count: 1 Modified Time: 2380 Debug: Off Object Name: Observers: none Pointer: 0x7762be0 Container manages memory: true Size: 2173064 Capacity: 2173064 Moving image = Image (0x699e3b0) RTTI typeinfo: itk::Image Reference Count: 2 Modified Time: 2601 Debug: Off Object Name: Observers: none Source: (none) Source output name: (none) Release Data: Off Data Released: False Global Release Data: Off PipelineMTime: 0 UpdateMTime: 2598 RealTimeStamp: 0 seconds LargestPossibleRegion: Dimension: 3 Index: [0, 0, 0] Size: [140, 140, 92] BufferedRegion: Dimension: 3 Index: [0, 0, 0] Size: [140, 140, 92] RequestedRegion: Dimension: 3 Index: [0, 0, 0] Size: [140, 140, 92] Spacing: [1.5, 1.5, 1.5] Origin: [-109.766, 67.572, -86.0385] Direction: 0.999223 -0.0113363 0.0377483 -0.0236447 -0.938674 0.343995 -0.0315337 0.34462 0.938212 IndexToPointMatrix: 1.49883 -0.0170045 0.0566225 -0.0354671 -1.40801 0.515993 -0.0473006 0.516931 1.40732 PointToIndexMatrix: 0.666149 -0.0157631 -0.0210225 -0.00755755 -0.625782 0.229747 0.0251656 0.22933 0.625475 Inverse Direction: 0.999223 -0.0236447 -0.0315337 -0.0113363 -0.938674 0.34462 0.0377483 0.343995 0.938212 PixelContainer: ImportImageContainer (0x3aacb90) RTTI typeinfo: itk::ImportImageContainer Reference Count: 1 Modified Time: 2595 Debug: Off Object Name: Observers: none Pointer: 0x87fba50 Container manages memory: true Size: 1803200 Capacity: 1803200 Weighting = 1 Sampling strategy = none Number of bins = 32 Radius = 4 Sampling percentage = 1 Transform = SyN Gradient step = 0.1 Update field sigma (voxel space) = 3 Total field sigma (voxel space) = 0 Update field time sigma = 0 Total field time sigma = 0 Number of time indices = 0 Number of time point samples = 0 Registration using 3 total stages. Stage 0 iterations = 1000x500x250x0 convergence threshold = 1e-06 convergence window size = 10 number of levels = 4 using the Mattes MI metric (number of bins = 32, weight = 1) preprocessing: winsorizing the image intensities Shrink factors (level 1 out of 4): [8, 8, 8] Shrink factors (level 2 out of 4): [4, 4, 4] Shrink factors (level 3 out of 4): [2, 2, 2] Shrink factors (level 4 out of 4): [1, 1, 1] smoothing sigmas per level: [3, 2, 1, 0] regular sampling (percentage = 0.25) *** Running Euler3DTransform registration *** DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 2DIAGNOSTIC, 1, -7.177073377858e-01, 1.797693134862e+308, 2.4989e-01, 2.4989e-01, 2DIAGNOSTIC, 2, -7.194377724402e-01, 1.797693134862e+308, 2.5138e-01, 1.4939e-03, 2DIAGNOSTIC, 3, -7.220898628518e-01, 1.797693134862e+308, 2.5287e-01, 1.4861e-03, 2DIAGNOSTIC, 4, -7.260241959002e-01, 1.797693134862e+308, 2.5436e-01, 1.4911e-03, 2DIAGNOSTIC, 5, -7.330961344407e-01, 1.797693134862e+308, 2.5584e-01, 1.4842e-03, 2DIAGNOSTIC, 6, -7.487244715228e-01, 1.797693134862e+308, 2.5731e-01, 1.4689e-03, 2DIAGNOSTIC, 7, -7.607440771750e-01, 1.797693134862e+308, 2.5900e-01, 1.6830e-03, 2DIAGNOSTIC, 8, -7.639653360185e-01, 1.797693134862e+308, 2.6069e-01, 1.6968e-03, 2DIAGNOSTIC, 9, -7.654440042938e-01, 1.797693134862e+308, 2.6216e-01, 1.4629e-03, 2DIAGNOSTIC, 10, -7.677485751894e-01, 5.301753495628e-03, 2.6400e-01, 1.8418e-03, 2DIAGNOSTIC, 11, -7.900350829895e-01, 5.350067397681e-03, 2.6594e-01, 1.9450e-03, 2DIAGNOSTIC, 12, -7.935036716757e-01, 5.050527453566e-03, 2.6847e-01, 2.5251e-03, 2DIAGNOSTIC, 13, -7.953064873121e-01, 4.483591268590e-03, 2.7041e-01, 1.9410e-03, 2DIAGNOSTIC, 14, -7.983799314068e-01, 3.796240037043e-03, 2.7235e-01, 1.9410e-03, 2DIAGNOSTIC, 15, -7.986884381181e-01, 3.034265197702e-03, 2.7429e-01, 1.9379e-03, 2DIAGNOSTIC, 16, -8.001601344532e-01, 2.478487414490e-03, 2.7604e-01, 1.7490e-03, 2DIAGNOSTIC, 17, -8.010670022512e-01, 2.042420346088e-03, 2.7777e-01, 1.7362e-03, 2DIAGNOSTIC, 18, -8.044639397073e-01, 1.610818071112e-03, 2.7956e-01, 1.7872e-03, 2DIAGNOSTIC, 19, -8.319112943612e-01, 1.640252582138e-03, 2.8203e-01, 2.4719e-03, 2DIAGNOSTIC, 20, -8.445490572543e-01, 1.763689344618e-03, 2.8572e-01, 3.6929e-03, 2DIAGNOSTIC, 21, -8.476567424303e-01, 2.151975417694e-03, 2.8807e-01, 2.3489e-03, 2DIAGNOSTIC, 22, -8.498562294449e-01, 2.403185588059e-03, 2.9001e-01, 1.9410e-03, 2DIAGNOSTIC, 23, -8.500560775693e-01, 2.437718144592e-03, 2.9193e-01, 1.9109e-03, 2DIAGNOSTIC, 24, -8.507057645457e-01, 2.291090595369e-03, 2.9380e-01, 1.8711e-03, 2DIAGNOSTIC, 25, -8.519397731845e-01, 1.960798499755e-03, 2.9568e-01, 1.8830e-03, 2DIAGNOSTIC, 26, -8.518205665928e-01, 1.497356763783e-03, 2.9735e-01, 1.6720e-03, 2DIAGNOSTIC, 27, -8.526214365889e-01, 9.583851191857e-04, 2.9928e-01, 1.9300e-03, 2DIAGNOSTIC, 28, -8.529386213871e-01, 4.102748200624e-04, 3.0122e-01, 1.9350e-03, 2DIAGNOSTIC, 29, -8.527534965726e-01, 1.950498370750e-04, 3.0316e-01, 1.9450e-03, 2DIAGNOSTIC, 30, -8.568693463907e-01, 1.745189009028e-04, 3.0512e-01, 1.9610e-03, 2DIAGNOSTIC, 31, -8.556795534899e-01, 1.590159092955e-04, 3.0708e-01, 1.9560e-03, 2DIAGNOSTIC, 32, -8.572710156963e-01, 1.724834464346e-04, 3.0963e-01, 2.5530e-03, 2DIAGNOSTIC, 33, -8.585326352218e-01, 1.844128239560e-04, 3.1144e-01, 1.8101e-03, 2DIAGNOSTIC, 34, -8.588597946140e-01, 1.875746986553e-04, 3.1321e-01, 1.7641e-03, 2DIAGNOSTIC, 35, -8.602923294712e-01, 1.994844001071e-04, 3.1535e-01, 2.1410e-03, 2DIAGNOSTIC, 36, -8.608254739122e-01, 1.954876344130e-04, 3.1729e-01, 1.9450e-03, 2DIAGNOSTIC, 37, -8.603272833592e-01, 1.764466521642e-04, 3.1906e-01, 1.7700e-03, 2DIAGNOSTIC, 38, -8.614620330228e-01, 1.556057249190e-04, 3.2106e-01, 1.9951e-03, 2DIAGNOSTIC, 39, -8.618637407476e-01, 1.217512370058e-04, 3.2321e-01, 2.1529e-03, 2DIAGNOSTIC, 40, -8.638715897135e-01, 1.319112519780e-04, 3.2518e-01, 1.9660e-03, 2DIAGNOSTIC, 41, -8.640011115872e-01, 1.194426035709e-04, 3.2694e-01, 1.7631e-03, 2DIAGNOSTIC, 42, -8.641196577311e-01, 1.106159472614e-04, 3.2868e-01, 1.7440e-03, 2DIAGNOSTIC, 43, -8.643044839280e-01, 1.036577721359e-04, 3.3081e-01, 2.1288e-03, 2DIAGNOSTIC, 44, -8.643947842792e-01, 9.000417527171e-05, 3.3273e-01, 1.9150e-03, 2DIAGNOSTIC, 45, -8.631240286400e-01, 6.942787449038e-05, 3.3446e-01, 1.7350e-03, 2DIAGNOSTIC, 46, -8.632790602018e-01, 4.889059149389e-05, 3.3639e-01, 1.9262e-03, 2DIAGNOSTIC, 47, -8.634414357435e-01, 2.207453292345e-05, 3.3833e-01, 1.9431e-03, DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 2DIAGNOSTIC, 1, -6.274092103591e-01, 1.797693134862e+308, 5.9131e-01, 2.5298e-01, 2DIAGNOSTIC, 2, -6.290548435292e-01, 1.797693134862e+308, 6.0295e-01, 1.1635e-02, 2DIAGNOSTIC, 3, -6.311479487450e-01, 1.797693134862e+308, 6.1469e-01, 1.1738e-02, 2DIAGNOSTIC, 4, -6.340518242840e-01, 1.797693134862e+308, 6.2691e-01, 1.2227e-02, 2DIAGNOSTIC, 5, -6.366811229792e-01, 1.797693134862e+308, 6.3940e-01, 1.2488e-02, 2DIAGNOSTIC, 6, -6.378877185987e-01, 1.797693134862e+308, 6.5569e-01, 1.6285e-02, 2DIAGNOSTIC, 7, -6.385406486083e-01, 1.797693134862e+308, 6.7235e-01, 1.6669e-02, 2DIAGNOSTIC, 8, -6.385422052437e-01, 1.797693134862e+308, 6.8957e-01, 1.7214e-02, 2DIAGNOSTIC, 9, -6.385289981042e-01, 1.797693134862e+308, 7.0253e-01, 1.2961e-02, 2DIAGNOSTIC, 10, -6.385212172340e-01, 1.205986401650e-03, 7.1671e-01, 1.4179e-02, 2DIAGNOSTIC, 11, -6.385059958571e-01, 8.167378924873e-04, 7.3097e-01, 1.4258e-02, 2DIAGNOSTIC, 12, -6.384433103248e-01, 4.787967019737e-04, 7.4539e-01, 1.4421e-02, 2DIAGNOSTIC, 13, -6.383982586742e-01, 2.193767223695e-04, 7.5800e-01, 1.2617e-02, 2DIAGNOSTIC, 14, -6.384409186193e-01, 6.992367235037e-05, 7.7241e-01, 1.4405e-02, 2DIAGNOSTIC, 15, -6.385271724262e-01, 1.430167939627e-05, 7.8696e-01, 1.4548e-02, DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 2DIAGNOSTIC, 1, -5.021904997856e-01, 1.797693134862e+308, 1.1602e+00, 3.7326e-01, 2DIAGNOSTIC, 2, -5.029529383483e-01, 1.797693134862e+308, 1.2653e+00, 1.0509e-01, 2DIAGNOSTIC, 3, -5.038777794442e-01, 1.797693134862e+308, 1.3684e+00, 1.0311e-01, 2DIAGNOSTIC, 4, -5.046434775869e-01, 1.797693134862e+308, 1.4740e+00, 1.0555e-01, 2DIAGNOSTIC, 5, -5.053722984645e-01, 1.797693134862e+308, 1.5796e+00, 1.0558e-01, 2DIAGNOSTIC, 6, -5.060410428757e-01, 1.797693134862e+308, 1.6865e+00, 1.0694e-01, 2DIAGNOSTIC, 7, -5.069047490335e-01, 1.797693134862e+308, 1.7917e+00, 1.0519e-01, 2DIAGNOSTIC, 8, -5.078027725824e-01, 1.797693134862e+308, 1.9255e+00, 1.3378e-01, 2DIAGNOSTIC, 9, -5.084320985210e-01, 1.797693134862e+308, 2.0857e+00, 1.6025e-01, 2DIAGNOSTIC, 10, -5.085102463406e-01, 8.478387707482e-04, 2.1913e+00, 1.0563e-01, 2DIAGNOSTIC, 11, -5.088786169884e-01, 7.132184009059e-04, 2.2967e+00, 1.0538e-01, 2DIAGNOSTIC, 12, -5.091705553469e-01, 5.856181138572e-04, 2.4152e+00, 1.1848e-01, 2DIAGNOSTIC, 13, -5.092854900773e-01, 4.689097002558e-04, 2.5196e+00, 1.0436e-01, 2DIAGNOSTIC, 14, -5.094899018287e-01, 3.651960992247e-04, 2.6404e+00, 1.2086e-01, 2DIAGNOSTIC, 15, -5.097537925379e-01, 2.794028618551e-04, 2.8982e+00, 2.5782e-01, 2DIAGNOSTIC, 16, -5.097549183894e-01, 2.019318999247e-04, 3.0166e+00, 1.1837e-01, 2DIAGNOSTIC, 17, -5.097557403683e-01, 1.431497990633e-04, 3.1275e+00, 1.1089e-01, 2DIAGNOSTIC, 18, -5.097525286145e-01, 1.053995632940e-04, 3.2327e+00, 1.0522e-01, 2DIAGNOSTIC, 19, -5.097455331976e-01, 8.044914785987e-05, 3.3366e+00, 1.0387e-01, 2DIAGNOSTIC, 20, -5.097532185070e-01, 5.280331282350e-05, 3.4554e+00, 1.1878e-01, 2DIAGNOSTIC, 21, -5.097474292432e-01, 3.256315239161e-05, 3.5917e+00, 1.3635e-01, 2DIAGNOSTIC, 22, -5.097499449519e-01, 1.885513222879e-05, 3.7110e+00, 1.1924e-01, 2DIAGNOSTIC, 23, -5.097343977113e-01, 7.070308347158e-06, 3.8373e+00, 1.2638e-01, DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 2DIAGNOSTIC, 1, -4.493272382700e-01, 1.797693134862e+308, 4.8294e+00, 9.9206e-01, Elapsed time (stage 0): 4.9532e+00 Stage 1 iterations = 1000x500x250x0 convergence threshold = 1.0000e-06 convergence window size = 10 number of levels = 4 using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) preprocessing: winsorizing the image intensities Shrink factors (level 1 out of 4): [8, 8, 8] Shrink factors (level 2 out of 4): [4, 4, 4] Shrink factors (level 3 out of 4): [2, 2, 2] Shrink factors (level 4 out of 4): [1, 1, 1] smoothing sigmas per level: [3, 2, 1, 0] regular sampling (percentage = 2.5000e-01) *** Running AffineTransform registration *** DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 2DIAGNOSTIC, 1, -8.624853427179e-01, 1.797693134862e+308, 2.6168e-01, 2.6168e-01, 2DIAGNOSTIC, 2, -8.641652764959e-01, 1.797693134862e+308, 2.6363e-01, 1.9441e-03, 2DIAGNOSTIC, 3, -8.645530709449e-01, 1.797693134862e+308, 2.6527e-01, 1.6451e-03, 2DIAGNOSTIC, 4, -8.655976002250e-01, 1.797693134862e+308, 2.6691e-01, 1.6389e-03, 2DIAGNOSTIC, 5, -8.676185784490e-01, 1.797693134862e+308, 2.6856e-01, 1.6448e-03, 2DIAGNOSTIC, 6, -8.729395311229e-01, 1.797693134862e+308, 2.7020e-01, 1.6470e-03, 2DIAGNOSTIC, 7, -8.787739327467e-01, 1.797693134862e+308, 2.7197e-01, 1.7700e-03, 2DIAGNOSTIC, 8, -8.836338832506e-01, 1.797693134862e+308, 2.7383e-01, 1.8580e-03, 2DIAGNOSTIC, 9, -8.897864060073e-01, 1.797693134862e+308, 2.7548e-01, 1.6439e-03, 2DIAGNOSTIC, 10, -8.991783213786e-01, 2.585885731479e-03, 2.7763e-01, 2.1520e-03, 2DIAGNOSTIC, 11, -9.054356189082e-01, 2.856793261448e-03, 2.8019e-01, 2.5630e-03, 2DIAGNOSTIC, 12, -9.100467280843e-01, 2.992215092313e-03, 2.8210e-01, 1.9100e-03, 2DIAGNOSTIC, 13, -9.130739616346e-01, 2.921999688941e-03, 2.8402e-01, 1.9150e-03, 2DIAGNOSTIC, 14, -9.272554447099e-01, 2.943820414150e-03, 2.8689e-01, 2.8739e-03, 2DIAGNOSTIC, 15, -9.301785818337e-01, 2.788980603368e-03, 2.8899e-01, 2.0990e-03, 2DIAGNOSTIC, 16, -9.305238966816e-01, 2.511753271229e-03, 2.9090e-01, 1.9121e-03, 2DIAGNOSTIC, 17, -9.300966440281e-01, 2.143552064893e-03, 2.9287e-01, 1.9679e-03, 2DIAGNOSTIC, 18, -9.311667166218e-01, 1.724493753973e-03, 2.9475e-01, 1.8852e-03, 2DIAGNOSTIC, 19, -9.330857852392e-01, 1.319383264671e-03, 2.9684e-01, 2.0900e-03, 2DIAGNOSTIC, 20, -9.341857096591e-01, 9.961631251321e-04, 2.9894e-01, 2.0940e-03, 2DIAGNOSTIC, 21, -9.361510384583e-01, 7.377022872666e-04, 3.0083e-01, 1.8880e-03, 2DIAGNOSTIC, 22, -9.362402918585e-01, 5.039773194812e-04, 3.0292e-01, 2.0909e-03, 2DIAGNOSTIC, 23, -9.363233546252e-01, 2.820569729620e-04, 3.0587e-01, 2.9478e-03, 2DIAGNOSTIC, 24, -9.362775206733e-01, 2.365336348887e-04, 3.0774e-01, 1.8709e-03, 2DIAGNOSTIC, 25, -9.363537116908e-01, 2.099714224805e-04, 3.0981e-01, 2.0740e-03, 2DIAGNOSTIC, 26, -9.355975007229e-01, 1.611852733366e-04, 3.1168e-01, 1.8721e-03, 2DIAGNOSTIC, 27, -9.356320901165e-01, 9.679079204694e-05, 3.1355e-01, 1.8721e-03, 2DIAGNOSTIC, 28, -9.357224062283e-01, 4.083685142891e-05, 3.1626e-01, 2.7070e-03, 2DIAGNOSTIC, 29, -9.364932997468e-01, 1.381977910139e-05, 3.1814e-01, 1.8759e-03, DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 2DIAGNOSTIC, 1, -6.785688399040e-01, 1.797693134862e+308, 5.7594e-01, 2.5780e-01, 2DIAGNOSTIC, 2, -6.797088873549e-01, 1.797693134862e+308, 5.9023e-01, 1.4292e-02, 2DIAGNOSTIC, 3, -6.815689162202e-01, 1.797693134862e+308, 6.0342e-01, 1.3186e-02, 2DIAGNOSTIC, 4, -6.836860062548e-01, 1.797693134862e+308, 6.1688e-01, 1.3461e-02, 2DIAGNOSTIC, 5, -6.862963863195e-01, 1.797693134862e+308, 6.3037e-01, 1.3488e-02, 2DIAGNOSTIC, 6, -6.885833136480e-01, 1.797693134862e+308, 6.4444e-01, 1.4076e-02, 2DIAGNOSTIC, 7, -6.915521771213e-01, 1.797693134862e+308, 6.5917e-01, 1.4725e-02, 2DIAGNOSTIC, 8, -6.996632463879e-01, 1.797693134862e+308, 6.7460e-01, 1.5431e-02, 2DIAGNOSTIC, 9, -7.022393823970e-01, 1.797693134862e+308, 6.9062e-01, 1.6026e-02, 2DIAGNOSTIC, 10, -7.041888655634e-01, 2.560790826088e-03, 7.0972e-01, 1.9096e-02, 2DIAGNOSTIC, 11, -7.069227672401e-01, 2.497429927037e-03, 7.2400e-01, 1.4276e-02, 2DIAGNOSTIC, 12, -7.199484781834e-01, 2.698865274377e-03, 7.4057e-01, 1.6578e-02, 2DIAGNOSTIC, 13, -7.232072195714e-01, 2.770998922091e-03, 7.5899e-01, 1.8413e-02, 2DIAGNOSTIC, 14, -7.222245722107e-01, 2.615784860755e-03, 7.7404e-01, 1.5050e-02, 2DIAGNOSTIC, 15, -7.221613230345e-01, 2.321849066671e-03, 7.8933e-01, 1.5290e-02, 2DIAGNOSTIC, 16, -7.221129181465e-01, 1.910119029166e-03, 8.0405e-01, 1.4726e-02, 2DIAGNOSTIC, 17, -7.220897670816e-01, 1.432840261181e-03, 8.1746e-01, 1.3412e-02, 2DIAGNOSTIC, 18, -7.220172573472e-01, 1.056151278357e-03, 8.3388e-01, 1.6418e-02, 2DIAGNOSTIC, 19, -7.219204700853e-01, 6.793745835495e-04, 8.4964e-01, 1.5758e-02, 2DIAGNOSTIC, 20, -7.218370735261e-01, 3.186883680576e-04, 8.6466e-01, 1.5017e-02, 2DIAGNOSTIC, 21, -7.219084690859e-01, 1.072495814027e-05, 8.8211e-01, 1.7456e-02, DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 2DIAGNOSTIC, 1, -5.968507326901e-01, 1.797693134862e+308, 1.2575e+00, 3.7535e-01, 2DIAGNOSTIC, 2, -5.973505526961e-01, 1.797693134862e+308, 1.3668e+00, 1.0931e-01, 2DIAGNOSTIC, 3, -5.981189135703e-01, 1.797693134862e+308, 1.4758e+00, 1.0906e-01, 2DIAGNOSTIC, 4, -5.986134355870e-01, 1.797693134862e+308, 1.5846e+00, 1.0873e-01, 2DIAGNOSTIC, 5, -5.992571748508e-01, 1.797693134862e+308, 1.6959e+00, 1.1130e-01, 2DIAGNOSTIC, 6, -5.998590411974e-01, 1.797693134862e+308, 1.8036e+00, 1.0775e-01, 2DIAGNOSTIC, 7, -6.012545843438e-01, 1.797693134862e+308, 1.9448e+00, 1.4119e-01, 2DIAGNOSTIC, 8, -6.014306828550e-01, 1.797693134862e+308, 2.0607e+00, 1.1589e-01, 2DIAGNOSTIC, 9, -6.015563453565e-01, 1.797693134862e+308, 2.2276e+00, 1.6689e-01, 2DIAGNOSTIC, 10, -6.016906716206e-01, 5.801240696330e-04, 2.3557e+00, 1.2817e-01, 2DIAGNOSTIC, 11, -6.017209463166e-01, 4.682256662847e-04, 2.4667e+00, 1.1099e-01, 2DIAGNOSTIC, 12, -6.017960975451e-01, 3.548604036884e-04, 2.5990e+00, 1.3226e-01, 2DIAGNOSTIC, 13, -6.018291930146e-01, 2.562108120611e-04, 2.7524e+00, 1.5335e-01, 2DIAGNOSTIC, 14, -6.018577049954e-01, 1.666324226945e-04, 2.8733e+00, 1.2091e-01, 2DIAGNOSTIC, 15, -6.018858045048e-01, 9.524240447481e-05, 3.0182e+00, 1.4498e-01, 2DIAGNOSTIC, 16, -6.019136070019e-01, 4.179127671401e-05, 3.1515e+00, 1.3322e-01, 2DIAGNOSTIC, 17, -6.019152425846e-01, 2.979732079671e-05, 3.2976e+00, 1.4614e-01, 2DIAGNOSTIC, 18, -6.019089702035e-01, 2.097998229072e-05, 3.4221e+00, 1.2451e-01, 2DIAGNOSTIC, 19, -6.018973955343e-01, 1.409623044100e-05, 3.5343e+00, 1.1221e-01, 2DIAGNOSTIC, 20, -6.018785113937e-01, 9.483300931680e-06, 3.6642e+00, 1.2990e-01, 2DIAGNOSTIC, 21, -6.018657772938e-01, 4.935285944009e-06, 3.7736e+00, 1.0935e-01, 2DIAGNOSTIC, 22, -6.018807855828e-01, 2.414266127043e-06, 3.9384e+00, 1.6487e-01, DIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 2DIAGNOSTIC, 1, -5.361322716150e-01, 1.797693134862e+308, 4.8891e+00, 9.5068e-01, Elapsed time (stage 1): 5.0068e+00 Stage 2 iterations = 100x70x50x0 convergence threshold = 1.0000e-06 convergence window size = 10 number of levels = 4 using the Mattes MI metric (number of bins = 32, weight = 1.0000e+00) preprocessing: winsorizing the image intensities Shrink factors (level 1 out of 4): [8, 8, 8] Shrink factors (level 2 out of 4): [4, 4, 4] Shrink factors (level 3 out of 4): [2, 2, 2] Shrink factors (level 4 out of 4): [1, 1, 1] smoothing sigmas per level: [3, 2, 1, 0] Using default NONE metricSamplingStrategy *** Running SyN registration (varianceForUpdateField = 3.0000e+00, varianceForTotalField = 0.0000e+00) *** XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 1DIAGNOSTIC, 1, -6.746364766470e-01, 1.797693134862e+308, 2.6472e-01, 2.6472e-01, 1DIAGNOSTIC, 2, -6.939669637556e-01, 1.797693134862e+308, 2.9351e-01, 2.8791e-02, 1DIAGNOSTIC, 3, -7.036284219975e-01, 1.797693134862e+308, 3.2275e-01, 2.9235e-02, 1DIAGNOSTIC, 4, -7.094364714710e-01, 1.797693134862e+308, 3.5750e-01, 3.4753e-02, 1DIAGNOSTIC, 5, -7.068188859482e-01, 1.797693134862e+308, 3.8662e-01, 2.9120e-02, 1DIAGNOSTIC, 6, -7.029862116889e-01, 1.797693134862e+308, 4.1561e-01, 2.8991e-02, 1DIAGNOSTIC, 7, -6.985492357239e-01, 1.797693134862e+308, 4.4493e-01, 2.9318e-02, 1DIAGNOSTIC, 8, -6.938155356672e-01, 1.797693134862e+308, 4.7556e-01, 3.0633e-02, 1DIAGNOSTIC, 9, -6.907519031423e-01, 1.797693134862e+308, 5.0459e-01, 2.9032e-02, 1DIAGNOSTIC, 10, -6.836488467761e-01, -2.582839200030e-04, 5.3383e-01, 2.9231e-02, XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 1DIAGNOSTIC, 1, -5.563336824797e-01, 1.797693134862e+308, 9.3181e-01, 3.9798e-01, 1DIAGNOSTIC, 2, -5.630910088774e-01, 1.797693134862e+308, 1.0852e+00, 1.5335e-01, 1DIAGNOSTIC, 3, -5.693228612390e-01, 1.797693134862e+308, 1.2433e+00, 1.5814e-01, 1DIAGNOSTIC, 4, -5.733112806138e-01, 1.797693134862e+308, 1.3960e+00, 1.5269e-01, 1DIAGNOSTIC, 5, -5.760708796134e-01, 1.797693134862e+308, 1.5533e+00, 1.5734e-01, 1DIAGNOSTIC, 6, -5.775041552812e-01, 1.797693134862e+308, 1.7076e+00, 1.5421e-01, 1DIAGNOSTIC, 7, -5.780422561015e-01, 1.797693134862e+308, 1.8598e+00, 1.5230e-01, 1DIAGNOSTIC, 8, -5.791679673293e-01, 1.797693134862e+308, 2.0127e+00, 1.5282e-01, 1DIAGNOSTIC, 9, -5.798038750962e-01, 1.797693134862e+308, 2.1708e+00, 1.5816e-01, 1DIAGNOSTIC, 10, -5.803793894597e-01, 2.382942147652e-03, 2.3267e+00, 1.5589e-01, 1DIAGNOSTIC, 11, -5.810436509180e-01, 1.520036128161e-03, 2.4827e+00, 1.5603e-01, 1DIAGNOSTIC, 12, -5.816494833458e-01, 9.657172141868e-04, 2.6454e+00, 1.6264e-01, 1DIAGNOSTIC, 13, -5.813239719548e-01, 6.322076095020e-04, 2.8022e+00, 1.5681e-01, 1DIAGNOSTIC, 14, -5.821650653928e-01, 4.584361935768e-04, 2.9597e+00, 1.5752e-01, 1DIAGNOSTIC, 15, -5.824083595460e-01, 3.636099163213e-04, 3.1199e+00, 1.6021e-01, 1DIAGNOSTIC, 16, -5.819281473436e-01, 2.767290225161e-04, 3.2832e+00, 1.6329e-01, 1DIAGNOSTIC, 17, -5.824251797629e-01, 2.049812858510e-04, 3.4540e+00, 1.7082e-01, 1DIAGNOSTIC, 18, -5.820823276994e-01, 1.434996451403e-04, 3.6242e+00, 1.7017e-01, 1DIAGNOSTIC, 19, -5.826987244543e-01, 1.077362050773e-04, 3.7856e+00, 1.6142e-01, 1DIAGNOSTIC, 20, -5.821584897237e-01, 6.571215196555e-05, 3.9439e+00, 1.5825e-01, 1DIAGNOSTIC, 21, -5.812535250150e-01, 1.646650633753e-05, 4.1043e+00, 1.6041e-01, 1DIAGNOSTIC, 22, -5.799958358038e-01, -4.318112395194e-05, 4.2677e+00, 1.6343e-01, XXDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST 1DIAGNOSTIC, 1, -4.580144040369e-01, 1.797693134862e+308, 5.6587e+00, 1.3910e+00, 1DIAGNOSTIC, 2, -4.604688475766e-01, 1.797693134862e+308, 6.6738e+00, 1.0151e+00, 1DIAGNOSTIC, 3, -4.624661319787e-01, 1.797693134862e+308, 7.6850e+00, 1.0111e+00, 1DIAGNOSTIC, 4, -4.641644189374e-01, 1.797693134862e+308, 8.6849e+00, 9.9989e-01, 1DIAGNOSTIC, 5, -4.657412276509e-01, 1.797693134862e+308, 9.6934e+00, 1.0085e+00, 1DIAGNOSTIC, 6, -4.671567959909e-01, 1.797693134862e+308, 1.0736e+01, 1.0426e+00, 1DIAGNOSTIC, 7, -4.680849766769e-01, 1.797693134862e+308, 1.1789e+01, 1.0526e+00, 1DIAGNOSTIC, 8, -4.688928866412e-01, 1.797693134862e+308, 1.2827e+01, 1.0381e+00, 1DIAGNOSTIC, 9, -4.694139828773e-01, 1.797693134862e+308, 1.3867e+01, 1.0403e+00, 1DIAGNOSTIC, 10, -4.697543555686e-01, 1.598893954998e-03, 1.4918e+01, 1.0515e+00, 1DIAGNOSTIC, 11, -4.701997581029e-01, 1.190265220647e-03, 1.5991e+01, 1.0728e+00, 1DIAGNOSTIC, 12, -4.704705336553e-01, 8.805545084348e-04, 1.7001e+01, 1.0098e+00, 1DIAGNOSTIC, 13, -4.706700385292e-01, 6.415429797434e-04, 1.8047e+01, 1.0454e+00, 1DIAGNOSTIC, 14, -4.708780873544e-01, 4.608951198090e-04, 1.9085e+01, 1.0387e+00, 1DIAGNOSTIC, 15, -4.708611583898e-01, 3.249469895749e-04, 2.0138e+01, 1.0524e+00, 1DIAGNOSTIC, 16, -4.709840807697e-01, 2.345446024394e-04, 2.1179e+01, 1.0412e+00, 1DIAGNOSTIC, 17, -4.709313697993e-01, 1.640913931818e-04, 2.2223e+01, 1.0444e+00, 1DIAGNOSTIC, 18, -4.709584901710e-01, 1.145216372907e-04, 2.3262e+01, 1.0384e+00, 1DIAGNOSTIC, 19, -4.709215382960e-01, 7.512161740079e-05, 2.4309e+01, 1.0472e+00, 1DIAGNOSTIC, 20, -4.709526195742e-01, 4.393676048742e-05, 2.5366e+01, 1.0576e+00, 1DIAGNOSTIC, 21, -4.709179561973e-01, 2.353344564596e-05, 2.6408e+01, 1.0417e+00, 1DIAGNOSTIC, 22, -4.709591240640e-01, 1.147861498019e-05, 2.7451e+01, 1.0432e+00, 1DIAGNOSTIC, 23, -4.708298866180e-01, 1.251759483394e-06, 2.8485e+01, 1.0338e+00, 1DIAGNOSTIC, 24, -4.708142571134e-01, -3.112823228908e-06, 2.9530e+01, 1.0445e+00, Elapsed time (stage 2): 30.55 Total elapsed time: 40.52 /usr/pubsw/packages/ANTS/2.3.4/bin/ConvertTransformFile 3 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn0GenericAffine.mat /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn0GenericAffine.txt --hm --ras lta_convert --inniftyreg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn0GenericAffine.txt --outlta /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn.lta --src /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz --trg /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz 7.3.2 --inniftyreg: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn0GenericAffine.txt input NiftyReg transform. --outlta: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn.lta output LTA. --src: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz src image (geometry). --trg: /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz trg image (geometry). LTA read, type : 1 0.91276 -0.01271 0.00513 -0.93553; -0.01370 0.91106 0.15789 -29.38544; -0.01648 -0.15404 0.93103 6.13857; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn.lta... lta_convert successful. mri_warp_convert --initk /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn1Warp.nii.gz --outm3z /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z --insrcgeom /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz 7.3.2 --inlps: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn1Warp.nii.gz input LPS warp. --outm3z: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z output M3Z. --insrcgeom: /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz source image (geometry). INFO: using NIfTI-1 qform niiRead(): detected input as 64 bit double, reading in as 32 bit float GCAMwrite mri_warp_convert successful. lta_convert --inlta /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn.lta --invert --outlta /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2diff.lta 7.3.2 --inlta: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn.lta input LTA transform. --invert: will invert transform. --outlta: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2diff.lta output LTA. LTA read, type : 1 0.91276 -0.01271 0.00513 -0.93553; -0.01370 0.91106 0.15789 -29.38544; -0.01648 -0.15404 0.93103 6.13857; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2diff.lta... lta_convert successful. mri_concatenate_lta /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2diff.bbr.lta /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn.lta /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2syn.bbr.lta volume geometry: extent : (140, 140, 92) voxel : ( 1.5000, 1.5000, 1.5000) x_(ras) : (-0.9992, 0.0236, -0.0315) y_(ras) : ( 0.0113, 0.9387, 0.3446) z_(ras) : (-0.0377, -0.3440, 0.9382) c_(ras) : ( 3.4338, 9.7358, 11.5723) file : /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/lowb.nii.gz volume geometry: extent : (140, 140, 92) voxel : ( 1.5000, 1.5000, 1.5000) x_(ras) : (-0.9992, 0.0236, -0.0315) y_(ras) : ( 0.0113, 0.9387, 0.3446) z_(ras) : (-0.0377, -0.3440, 0.9382) c_(ras) : ( 3.4338, 9.7358, 11.5723) file : /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz Read individual LTAs Warning: dst volume of lta1 doesn't match src volume of lta2 Volume geometry for lta1-dst: Volume geometry for lta2-src: Combining the two LTAs to get a RAS-to-RAS from src of LTA1 to dst of LTA2... Writing combined LTA to file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2syn.bbr.lta... mri_concatenate_lta successful. lta_convert --inlta /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2syn.bbr.lta --invert --outlta /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2anatorig.bbr.lta 7.3.2 --inlta: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2syn.bbr.lta input LTA transform. --invert: will invert transform. --outlta: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2anatorig.bbr.lta output LTA. LTA read, type : 1 0.91232 -0.02308 0.02138 -0.89178; -0.00673 0.90738 0.17820 -28.82097; -0.03525 -0.17469 0.92685 5.41621; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2anatorig.bbr.lta... lta_convert successful. lta_convert --infsl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/identity.mat --outlta /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2syn.lta --src /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz --trg /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz 7.3.2 --infsl: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/identity.mat input FSL transform. --outlta: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2syn.lta output LTA. --src: /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz src image (geometry). --trg: /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz trg image (geometry). FSLOUTPUTTYPE NIFTI_GZ fsl2TkReg: mov det = -3.375, ref det = -3.375 LTA read, type : 1 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 0.00000; 0.00000 0.00000 0.00000 1.00000; Writing LTA to file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2syn.lta... lta_convert successful. mri_vol2vol --gcam /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/aparc+aseg.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2syn.bbr.lta /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2syn.lta 0 0 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg.nii.gz Loading mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/aparc+aseg.nii.gz Loading source LTA /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2syn.bbr.lta Loading GCAM /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Loading destination LTA /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2syn.lta MRIvol2volGCAM(): VSM not used MRIvol2volGCAM(): interpolation type is 0 nearest MRIvol2volGCAM(): Inverting Source LTA WARN: MRIvol2volGCAM(): neither src nor dst VG of Dest LTA is conformed MRIvol2volGCAM(): Chaning Destination LTA type to vox2vox MRIvol2volGCAM: t=0.3942 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg.nii.gz mri_vol2vol gcam done #VMPC# mri_vol2vol VmPeak 770776 mri_vol2vol --gcam /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/aparc+aseg_mask.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2syn.bbr.lta /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2syn.lta 0 0 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg_mask.nii.gz Loading mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/aparc+aseg_mask.nii.gz Loading source LTA /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2syn.bbr.lta Loading GCAM /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Loading destination LTA /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2syn.lta MRIvol2volGCAM(): VSM not used MRIvol2volGCAM(): interpolation type is 0 nearest MRIvol2volGCAM(): Inverting Source LTA WARN: MRIvol2volGCAM(): neither src nor dst VG of Dest LTA is conformed MRIvol2volGCAM(): Chaning Destination LTA type to vox2vox MRIvol2volGCAM: t=0.3945 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg_mask.nii.gz mri_vol2vol gcam done #VMPC# mri_vol2vol VmPeak 770776 mri_vol2vol --gcam /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/White-Matter.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2syn.bbr.lta /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2syn.lta 0 0 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/White-Matter.nii.gz Loading mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/White-Matter.nii.gz Loading source LTA /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2syn.bbr.lta Loading GCAM /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Loading destination LTA /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2syn.lta MRIvol2volGCAM(): VSM not used MRIvol2volGCAM(): interpolation type is 0 nearest MRIvol2volGCAM(): Inverting Source LTA WARN: MRIvol2volGCAM(): neither src nor dst VG of Dest LTA is conformed MRIvol2volGCAM(): Chaning Destination LTA type to vox2vox MRIvol2volGCAM: t=0.4004 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/White-Matter.nii.gz mri_vol2vol gcam done #VMPC# mri_vol2vol VmPeak 770776 mri_vol2vol --gcam /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/White-Matter++.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2syn.bbr.lta /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2syn.lta 0 0 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/White-Matter++.nii.gz Loading mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/White-Matter++.nii.gz Loading source LTA /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2syn.bbr.lta Loading GCAM /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Loading destination LTA /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2syn.lta MRIvol2volGCAM(): VSM not used MRIvol2volGCAM(): interpolation type is 0 nearest MRIvol2volGCAM(): Inverting Source LTA WARN: MRIvol2volGCAM(): neither src nor dst VG of Dest LTA is conformed MRIvol2volGCAM(): Chaning Destination LTA type to vox2vox MRIvol2volGCAM: t=0.3899 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/White-Matter++.nii.gz mri_vol2vol gcam done #VMPC# mri_vol2vol VmPeak 770776 mri_vol2vol --gcam /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/aparc+aseg+thalnuc.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2syn.bbr.lta /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2syn.lta 0 0 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz Loading mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/anatorig/aparc+aseg+thalnuc.nii.gz Loading source LTA /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/anatorig2syn.bbr.lta Loading GCAM /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Loading destination LTA /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2syn.lta MRIvol2volGCAM(): VSM not used MRIvol2volGCAM(): interpolation type is 0 nearest MRIvol2volGCAM(): Inverting Source LTA WARN: MRIvol2volGCAM(): neither src nor dst VG of Dest LTA is conformed MRIvol2volGCAM(): Chaning Destination LTA type to vox2vox MRIvol2volGCAM: t=0.3854 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz mri_vol2vol gcam done #VMPC# mri_vol2vol VmPeak 770776 mri_vol2vol --gcam /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lowb_brain_mask.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn.lta /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2syn.lta 0 0 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lowb_brain_mask.nii.gz Loading mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lowb_brain_mask.nii.gz Loading source LTA /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn.lta Loading GCAM /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Loading destination LTA /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2syn.lta MRIvol2volGCAM(): VSM not used MRIvol2volGCAM(): interpolation type is 0 nearest MRIvol2volGCAM(): Chaning Source LTA type to vox2vox MRIvol2volGCAM(): Inverting Source LTA WARN: MRIvol2volGCAM(): neither src nor dst VG of Dest LTA is conformed MRIvol2volGCAM(): Chaning Destination LTA type to vox2vox MRIvol2volGCAM: t=0.3280 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lowb_brain_mask.nii.gz mri_vol2vol gcam done #VMPC# mri_vol2vol VmPeak 708344 #------------------------------------- #@# Priors Wed Jul 12 17:36:36 EDT 2023 /usr/local/freesurfer/7.3.2/bin/dmri_train --outdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn --out acomm_avg16_syn_bbr cc.bodyc_avg16_syn_bbr cc.bodyp_avg16_syn_bbr cc.bodypf_avg16_syn_bbr cc.bodypm_avg16_syn_bbr cc.bodyt_avg16_syn_bbr cc.genu_avg16_syn_bbr cc.rostrum_avg16_syn_bbr cc.splenium_avg16_syn_bbr mcp_avg16_syn_bbr lh.af_avg16_syn_bbr rh.af_avg16_syn_bbr lh.ar_avg16_syn_bbr rh.ar_avg16_syn_bbr lh.atr_avg16_syn_bbr rh.atr_avg16_syn_bbr lh.cbd_avg16_syn_bbr rh.cbd_avg16_syn_bbr lh.cbv_avg16_syn_bbr rh.cbv_avg16_syn_bbr lh.cst_avg16_syn_bbr rh.cst_avg16_syn_bbr lh.emc_avg16_syn_bbr rh.emc_avg16_syn_bbr lh.fat_avg16_syn_bbr rh.fat_avg16_syn_bbr lh.fx_avg16_syn_bbr rh.fx_avg16_syn_bbr lh.ilf_avg16_syn_bbr rh.ilf_avg16_syn_bbr lh.mlf_avg16_syn_bbr rh.mlf_avg16_syn_bbr lh.or_avg16_syn_bbr rh.or_avg16_syn_bbr lh.slf1_avg16_syn_bbr rh.slf1_avg16_syn_bbr lh.slf2_avg16_syn_bbr rh.slf2_avg16_syn_bbr lh.slf3_avg16_syn_bbr rh.slf3_avg16_syn_bbr lh.uf_avg16_syn_bbr rh.uf_avg16_syn_bbr --slist /home/scratch/tmp.FId2KO.16.sub-BANDA001.txt --trk syn/acomm.bbr.prep.trk syn/cc.bodyc.bbr.prep.trk syn/cc.bodyp.bbr.prep.trk syn/cc.bodypf.bbr.prep.trk syn/cc.bodypm.bbr.prep.trk syn/cc.bodyt.bbr.prep.trk syn/cc.genu.bbr.prep.trk syn/cc.rostrum.bbr.prep.trk syn/cc.splenium.bbr.prep.trk syn/mcp.bbr.prep.trk syn/lh.af.bbr.prep.trk syn/rh.af.bbr.prep.trk syn/lh.ar.bbr.prep.trk syn/rh.ar.bbr.prep.trk syn/lh.atr.bbr.prep.trk syn/rh.atr.bbr.prep.trk syn/lh.cbd.bbr.prep.trk syn/rh.cbd.bbr.prep.trk syn/lh.cbv.bbr.prep.trk syn/rh.cbv.bbr.prep.trk syn/lh.cst.bbr.prep.trk syn/rh.cst.bbr.prep.trk syn/lh.emc.bbr.prep.trk syn/rh.emc.bbr.prep.trk syn/lh.fat.bbr.prep.trk syn/rh.fat.bbr.prep.trk syn/lh.fx.bbr.prep.trk syn/rh.fx.bbr.prep.trk syn/lh.ilf.bbr.prep.trk syn/rh.ilf.bbr.prep.trk syn/lh.mlf.bbr.prep.trk syn/rh.mlf.bbr.prep.trk syn/lh.or.bbr.prep.trk syn/rh.or.bbr.prep.trk syn/lh.slf1.bbr.prep.trk syn/rh.slf1.bbr.prep.trk syn/lh.slf2.bbr.prep.trk syn/rh.slf2.bbr.prep.trk syn/lh.slf3.bbr.prep.trk syn/rh.slf3.bbr.prep.trk syn/lh.uf.bbr.prep.trk syn/rh.uf.bbr.prep.trk --seg syn/aparc+aseg+thalnuc.nii.gz --cmask syn/cortex+2mm+crblm.nii.gz --lmask 0 0 0 0 0 0 0 0 0 0 0 0 10 49 10 49 0 0 0 0 16 16 0 0 0 0 28 60 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --bmask /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg_mask.nii.gz --fa /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz --cptdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff --regnl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z --refnl /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2diff.lta --ncpts 7 8 9 7 7 12 5 5 7 7 9 9 4 4 4 4 7 7 5 5 7 7 7 7 5 5 9 9 8 8 7 7 5 5 7 7 8 8 6 6 7 7 --trunc --aprior 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2/bin/dmri_train --outdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn --out acomm_avg16_syn_bbr cc.bodyc_avg16_syn_bbr cc.bodyp_avg16_syn_bbr cc.bodypf_avg16_syn_bbr cc.bodypm_avg16_syn_bbr cc.bodyt_avg16_syn_bbr cc.genu_avg16_syn_bbr cc.rostrum_avg16_syn_bbr cc.splenium_avg16_syn_bbr mcp_avg16_syn_bbr lh.af_avg16_syn_bbr rh.af_avg16_syn_bbr lh.ar_avg16_syn_bbr rh.ar_avg16_syn_bbr lh.atr_avg16_syn_bbr rh.atr_avg16_syn_bbr lh.cbd_avg16_syn_bbr rh.cbd_avg16_syn_bbr lh.cbv_avg16_syn_bbr rh.cbv_avg16_syn_bbr lh.cst_avg16_syn_bbr rh.cst_avg16_syn_bbr lh.emc_avg16_syn_bbr rh.emc_avg16_syn_bbr lh.fat_avg16_syn_bbr rh.fat_avg16_syn_bbr lh.fx_avg16_syn_bbr rh.fx_avg16_syn_bbr lh.ilf_avg16_syn_bbr rh.ilf_avg16_syn_bbr lh.mlf_avg16_syn_bbr rh.mlf_avg16_syn_bbr lh.or_avg16_syn_bbr rh.or_avg16_syn_bbr lh.slf1_avg16_syn_bbr rh.slf1_avg16_syn_bbr lh.slf2_avg16_syn_bbr rh.slf2_avg16_syn_bbr lh.slf3_avg16_syn_bbr rh.slf3_avg16_syn_bbr lh.uf_avg16_syn_bbr rh.uf_avg16_syn_bbr --slist /home/scratch/tmp.FId2KO.16.sub-BANDA001.txt --trk syn/acomm.bbr.prep.trk syn/cc.bodyc.bbr.prep.trk syn/cc.bodyp.bbr.prep.trk syn/cc.bodypf.bbr.prep.trk syn/cc.bodypm.bbr.prep.trk syn/cc.bodyt.bbr.prep.trk syn/cc.genu.bbr.prep.trk syn/cc.rostrum.bbr.prep.trk syn/cc.splenium.bbr.prep.trk syn/mcp.bbr.prep.trk syn/lh.af.bbr.prep.trk syn/rh.af.bbr.prep.trk syn/lh.ar.bbr.prep.trk syn/rh.ar.bbr.prep.trk syn/lh.atr.bbr.prep.trk syn/rh.atr.bbr.prep.trk syn/lh.cbd.bbr.prep.trk syn/rh.cbd.bbr.prep.trk syn/lh.cbv.bbr.prep.trk syn/rh.cbv.bbr.prep.trk syn/lh.cst.bbr.prep.trk syn/rh.cst.bbr.prep.trk syn/lh.emc.bbr.prep.trk syn/rh.emc.bbr.prep.trk syn/lh.fat.bbr.prep.trk syn/rh.fat.bbr.prep.trk syn/lh.fx.bbr.prep.trk syn/rh.fx.bbr.prep.trk syn/lh.ilf.bbr.prep.trk syn/rh.ilf.bbr.prep.trk syn/lh.mlf.bbr.prep.trk syn/rh.mlf.bbr.prep.trk syn/lh.or.bbr.prep.trk syn/rh.or.bbr.prep.trk syn/lh.slf1.bbr.prep.trk syn/rh.slf1.bbr.prep.trk syn/lh.slf2.bbr.prep.trk syn/rh.slf2.bbr.prep.trk syn/lh.slf3.bbr.prep.trk syn/rh.slf3.bbr.prep.trk syn/lh.uf.bbr.prep.trk syn/rh.uf.bbr.prep.trk --seg syn/aparc+aseg+thalnuc.nii.gz --cmask syn/cortex+2mm+crblm.nii.gz --lmask 0 0 0 0 0 0 0 0 0 0 0 0 10 49 10 49 0 0 0 0 16 16 0 0 0 0 28 60 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --bmask /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg_mask.nii.gz --fa /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz --cptdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff --regnl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z --refnl /usr/local/freesurfer/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2diff.lta --ncpts 7 8 9 7 7 12 5 5 7 7 9 9 4 4 4 4 7 7 5 5 7 7 7 7 5 5 9 9 8 8 7 7 5 5 7 7 8 8 6 6 7 7 --trunc --aprior sysname Linux hostname curie.nmr.mgh.harvard.edu machine x86_64 user cy281 Output directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn Output directory in test subject's space: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff Training subject directory list: /home/scratch/tmp.FId2KO.16.sub-BANDA001.txt Location of streamline files relative to base: syn/acomm.bbr.prep.trk syn/cc.bodyc.bbr.prep.trk syn/cc.bodyp.bbr.prep.trk syn/cc.bodypf.bbr.prep.trk syn/cc.bodypm.bbr.prep.trk syn/cc.bodyt.bbr.prep.trk syn/cc.genu.bbr.prep.trk syn/cc.rostrum.bbr.prep.trk syn/cc.splenium.bbr.prep.trk syn/mcp.bbr.prep.trk syn/lh.af.bbr.prep.trk syn/rh.af.bbr.prep.trk syn/lh.ar.bbr.prep.trk syn/rh.ar.bbr.prep.trk syn/lh.atr.bbr.prep.trk syn/rh.atr.bbr.prep.trk syn/lh.cbd.bbr.prep.trk syn/rh.cbd.bbr.prep.trk syn/lh.cbv.bbr.prep.trk syn/rh.cbv.bbr.prep.trk syn/lh.cst.bbr.prep.trk syn/rh.cst.bbr.prep.trk syn/lh.emc.bbr.prep.trk syn/rh.emc.bbr.prep.trk syn/lh.fat.bbr.prep.trk syn/rh.fat.bbr.prep.trk syn/lh.fx.bbr.prep.trk syn/rh.fx.bbr.prep.trk syn/lh.ilf.bbr.prep.trk syn/rh.ilf.bbr.prep.trk syn/lh.mlf.bbr.prep.trk syn/rh.mlf.bbr.prep.trk syn/lh.or.bbr.prep.trk syn/rh.or.bbr.prep.trk syn/lh.slf1.bbr.prep.trk syn/rh.slf1.bbr.prep.trk syn/lh.slf2.bbr.prep.trk syn/rh.slf2.bbr.prep.trk syn/lh.slf3.bbr.prep.trk syn/rh.slf3.bbr.prep.trk syn/lh.uf.bbr.prep.trk syn/rh.uf.bbr.prep.trk Location of cortex masks relative to base: syn/cortex+2mm+crblm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 0 0 0 0 0 0 0 0 0 0 0 0 10 49 10 49 0 0 0 0 16 16 0 0 0 0 28 60 0 0 0 0 10 49 0 0 0 0 0 0 0 0 Location of aparc+aseg's relative to base: syn/aparc+aseg+thalnuc.nii.gz Brain mask for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg_mask.nii.gz FA map for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz Affine registration from atlas to base for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2diff.lta Nonlinear registration from atlas to base for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z Nonlinear registration source reference for output subject: /autofs/vast/freesurfer/centos7_x86_64/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz Number of control points for initial spline: 7 8 9 7 7 12 5 5 7 7 9 9 4 4 4 4 7 7 5 5 7 7 7 7 5 5 9 9 8 8 7 7 5 5 7 7 8 8 6 6 7 7 Exclude previously chosen center streamlines: 0 Use truncated streamlines: 1 Compute priors on underlying anatomy: 1 Compute priors on shape: 0 Loading segmentation from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/cortex+2mm+crblm.nii.gz Loading brain mask of output subject from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg_mask.nii.gz Loading FA map of output subject from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz Loading non-linear registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Inverting Morph Saving inverse Loading non-linear registration source for output subject from /autofs/vast/freesurfer/centos7_x86_64/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz Loading affine registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2diff.lta LTA registration format detected FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -3.375, ref det = -3.375 Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/acomm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/acomm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/acomm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/acomm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/acomm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/acomm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/acomm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/acomm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/acomm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/acomm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/acomm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/acomm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/acomm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/acomm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/acomm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/acomm.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 800 total streamlines (min/mean/max length: 62/76/91) Processing pathway 1 of 42... INFO: Have 800 non-truncated streamlines (min/mean/max length: 62/76/91) Computing path histograms INFO: Total streamline volume is 3445 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 23 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0978438 INFO: Points where local peaks in curvature occur are 34 79 34 (curv = 0.2237) 66 85 44 (curv = 0.125488) 81 75 38 (curv = 0.61522) INFO: Intermediate dominant points are 40 85 29 34 79 34 47 82 43 66 85 44 73 81 42 81 75 38 80 88 27 INFO: Final dominant points are 40 85 29 34 79 34 59 83 46 66 85 44 75 80 41 81 75 38 80 88 27 INFO: Selected control points are 40 85 29 35 79 35 57 84 47 66 85 44 75 80 41 82 75 38 80 88 27 INFO: Distances between consecutive points are 10 26 10 11 9 17 INFO: Selected control points in test subject's space are 54 79 11 47 75 19 69 81 32 77 81 29 86 76 27 94 70 24 91 81 10 INFO: Distances between consecutive points in test subject's space are 11 26 9 10 10 18 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/acomm_avg16_syn_bbr_cpts_7.nii.gz Done in 1.992 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/cc.bodyc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/cc.bodyc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/cc.bodyc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/cc.bodyc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/cc.bodyc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/cc.bodyc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/cc.bodyc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/cc.bodyc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/cc.bodyc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/cc.bodyc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/cc.bodyc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/cc.bodyc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/cc.bodyc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/cc.bodyc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/cc.bodyc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/cc.bodyc.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 1 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 19999 total streamlines (min/mean/max length: 62/82/102) Processing pathway 2 of 42... INFO: Have 19999 non-truncated streamlines (min/mean/max length: 62/82/102) Computing path histograms INFO: Total streamline volume is 31147 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 23 segments Computing prior on underlying anatomy (all streamlines) Selecting 8 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0913773 INFO: Points where local peaks in curvature occur are 46 73 72 (curv = 0.268371) 50 73 67 (curv = 0.109161) 58 74 63 (curv = 0.118489) 70 71 68 (curv = 0.152383) 71 70 74 (curv = 0.200961) 65 70 83 (curv = 0.135084) INFO: Intermediate dominant points are 56 76 86 50 73 81 46 73 72 58 74 63 64 73 64 71 70 74 67 71 80 62 72 88 INFO: Final dominant points are 56 76 86 49 73 78 46 73 72 58 74 63 69 71 68 71 70 74 65 70 83 62 72 88 INFO: Selected control points are 56 76 86 49 73 79 46 73 72 58 74 63 70 71 68 71 70 74 65 70 83 62 72 88 INFO: Distances between consecutive points are 10 8 15 13 6 11 6 INFO: Selected control points in test subject's space are 65 78 73 59 73 66 57 73 59 69 73 49 80 70 56 81 69 62 76 72 71 72 75 77 INFO: Distances between consecutive points in test subject's space are 10 7 16 13 6 11 8 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_cpts_8.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.bodyc_avg16_syn_bbr_cpts_8.nii.gz Done in 5.581 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/cc.bodyp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/cc.bodyp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/cc.bodyp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/cc.bodyp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/cc.bodyp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/cc.bodyp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/cc.bodyp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/cc.bodyp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/cc.bodyp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/cc.bodyp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/cc.bodyp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/cc.bodyp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/cc.bodyp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/cc.bodyp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/cc.bodyp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/cc.bodyp.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 20000 total streamlines (min/mean/max length: 68/93/117) Processing pathway 3 of 42... INFO: Have 20000 non-truncated streamlines (min/mean/max length: 68/93/117) Computing path histograms INFO: Total streamline volume is 36726 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 26 segments Computing prior on underlying anatomy (all streamlines) Selecting 9 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0910976 INFO: Points where local peaks in curvature occur are 51 52 79 (curv = 0.169947) 46 57 71 (curv = 0.161976) 50 60 64 (curv = 0.117439) 60 64 61 (curv = 0.195542) 70 58 64 (curv = 0.192623) 72 57 68 (curv = 0.139069) 70 54 75 (curv = 0.10718) INFO: Intermediate dominant points are 57 52 85 51 52 79 46 57 71 50 60 64 60 64 61 70 58 64 70 54 75 69 51 78 63 44 82 INFO: Final dominant points are 57 52 85 51 52 79 46 57 71 50 60 64 60 64 61 70 58 64 70 54 75 66 49 82 63 44 82 INFO: Selected control points are 57 52 85 50 53 79 47 56 71 50 60 64 60 64 61 70 59 65 71 54 74 66 49 81 63 44 82 INFO: Distances between consecutive points are 9 9 9 11 12 10 10 6 INFO: Selected control points in test subject's space are 66 54 74 60 54 67 58 55 60 60 59 53 71 62 50 81 57 55 81 53 64 77 50 71 73 45 73 INFO: Distances between consecutive points in test subject's space are 9 7 8 12 12 10 9 7 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_cpts_9.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.bodyp_avg16_syn_bbr_cpts_9.nii.gz Done in 6.065 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/cc.bodypf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/cc.bodypf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/cc.bodypf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/cc.bodypf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/cc.bodypf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/cc.bodypf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/cc.bodypf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/cc.bodypf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/cc.bodypf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/cc.bodypf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/cc.bodypf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/cc.bodypf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/cc.bodypf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/cc.bodypf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/cc.bodypf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/cc.bodypf.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 20000 total streamlines (min/mean/max length: 56/74/93) Processing pathway 4 of 42... INFO: Have 20000 non-truncated streamlines (min/mean/max length: 56/74/93) Computing path histograms INFO: Total streamline volume is 19660 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 21 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0988134 INFO: Points where local peaks in curvature occur are 49 102 68 (curv = 0.105943) 47 100 63 (curv = 0.30607) 64 95 56 (curv = 0.124442) 72 100 63 (curv = 0.29651) INFO: Intermediate dominant points are 54 107 76 51 103 69 47 100 63 57 94 57 64 95 56 72 100 63 66 107 76 INFO: Final dominant points are 54 107 76 49 102 68 47 100 63 57 94 56 64 95 56 72 100 63 66 107 76 INFO: Selected control points are 54 107 76 50 102 68 47 99 63 57 94 57 65 95 57 71 99 62 66 107 76 INFO: Distances between consecutive points are 10 7 13 8 9 17 INFO: Selected control points in test subject's space are 63 111 58 60 103 50 58 99 45 68 92 41 76 92 41 82 97 44 77 111 58 INFO: Distances between consecutive points in test subject's space are 12 7 13 8 8 20 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.bodypf_avg16_syn_bbr_cpts_7.nii.gz Done in 5.139 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/cc.bodypm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/cc.bodypm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/cc.bodypm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/cc.bodypm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/cc.bodypm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/cc.bodypm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/cc.bodypm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/cc.bodypm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/cc.bodypm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/cc.bodypm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/cc.bodypm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/cc.bodypm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/cc.bodypm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/cc.bodypm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/cc.bodypm.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/cc.bodypm.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 20000 total streamlines (min/mean/max length: 55/73/88) Processing pathway 5 of 42... INFO: Have 20000 non-truncated streamlines (min/mean/max length: 55/73/88) Computing path histograms INFO: Total streamline volume is 22331 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 21 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.100593 INFO: Points where local peaks in curvature occur are 53 86 82 (curv = 0.144184) 49 85 70 (curv = 0.17254) 62 83 62 (curv = 0.149306) 70 86 70 (curv = 0.318657) INFO: Intermediate dominant points are 57 87 85 53 86 82 49 85 70 62 83 62 70 86 70 68 86 74 62 88 82 INFO: Final dominant points are 57 87 85 53 86 82 49 85 70 62 83 62 70 86 70 67 87 78 62 88 82 INFO: Selected control points are 57 87 85 53 86 82 49 85 70 61 84 62 70 86 70 66 87 78 62 88 82 INFO: Distances between consecutive points are 5 13 14 12 9 6 INFO: Selected control points in test subject's space are 67 89 69 62 88 66 60 85 54 72 83 46 82 85 55 78 88 62 73 89 65 INFO: Distances between consecutive points in test subject's space are 6 13 15 14 9 6 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.bodypm_avg16_syn_bbr_cpts_7.nii.gz Done in 4.943 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/cc.bodyt.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/cc.bodyt.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/cc.bodyt.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/cc.bodyt.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/cc.bodyt.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/cc.bodyt.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/cc.bodyt.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/cc.bodyt.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/cc.bodyt.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/cc.bodyt.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/cc.bodyt.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/cc.bodyt.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/cc.bodyt.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/cc.bodyt.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/cc.bodyt.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/cc.bodyt.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 980 total streamlines (min/mean/max length: 90/132/163) Processing pathway 6 of 42... INFO: Have 977 non-truncated streamlines (min/mean/max length: 90/132/163) Computing path histograms INFO: Total streamline volume is 14226 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 37 segments Computing prior on underlying anatomy (all streamlines) Selecting 12 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.118159 INFO: Points where local peaks in curvature occur are 24 75 49 (curv = 0.417235) 33 67 51 (curv = 0.128558) 38 64 53 (curv = 0.148226) 41 56 62 (curv = 0.13124) 45 54 66 (curv = 0.280553) 53 59 62 (curv = 0.179818) 72 55 66 (curv = 0.24289) 77 58 62 (curv = 0.187796) 76 63 57 (curv = 0.248228) 87 69 49 (curv = 0.153874) 90 70 50 (curv = 0.147425) INFO: Intermediate dominant points are 26 80 46 24 75 49 33 67 51 38 64 53 45 54 66 53 59 62 65 59 61 72 55 66 76 63 57 81 65 53 87 69 49 96 67 54 INFO: Final dominant points are 26 80 46 24 75 49 33 67 51 38 64 53 45 54 66 53 59 62 68 57 63 72 55 66 76 63 57 83 65 52 87 69 49 96 67 54 INFO: Selected control points are 26 80 46 24 75 49 33 68 51 38 64 54 44 54 65 54 60 61 67 58 62 73 55 65 77 62 57 82 65 52 88 70 48 96 67 54 INFO: Distances between consecutive points are 6 12 7 16 12 13 7 11 8 9 10 INFO: Selected control points in test subject's space are 35 78 31 32 74 35 43 66 38 49 62 42 55 52 54 64 58 50 78 56 52 84 53 56 88 59 46 94 62 41 100 67 36 110 64 44 INFO: Distances between consecutive points in test subject's space are 6 14 8 17 12 14 8 12 8 9 13 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_cpts_12.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.bodyt_avg16_syn_bbr_cpts_12.nii.gz Done in 2.482 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/cc.genu.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/cc.genu.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/cc.genu.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/cc.genu.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/cc.genu.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/cc.genu.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/cc.genu.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/cc.genu.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/cc.genu.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/cc.genu.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/cc.genu.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/cc.genu.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/cc.genu.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/cc.genu.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/cc.genu.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/cc.genu.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 20000 total streamlines (min/mean/max length: 41/54/64) Processing pathway 7 of 42... INFO: Have 20000 non-truncated streamlines (min/mean/max length: 41/54/64) Computing path histograms INFO: Total streamline volume is 17745 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 15 segments Computing prior on underlying anatomy (all streamlines) Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0943966 INFO: Points where local peaks in curvature occur are 48 105 54 (curv = 0.172646) 60 99 52 (curv = 0.102154) 72 108 52 (curv = 0.223441) INFO: Intermediate dominant points are 53 118 61 48 105 54 60 99 52 72 108 52 67 119 58 INFO: Final dominant points are 53 118 61 48 105 54 60 99 52 72 108 52 67 119 58 INFO: Selected control points are 53 118 61 48 105 53 60 99 52 72 108 51 67 119 58 INFO: Distances between consecutive points are 16 13 15 14 INFO: Selected control points in test subject's space are 64 119 39 60 104 34 72 96 36 84 106 32 79 120 36 INFO: Distances between consecutive points in test subject's space are 16 15 16 15 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_cpts_5.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_5.nii.gz Done in 3.997 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/cc.rostrum.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/cc.rostrum.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/cc.rostrum.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/cc.rostrum.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/cc.rostrum.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/cc.rostrum.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/cc.rostrum.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/cc.rostrum.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/cc.rostrum.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/cc.rostrum.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/cc.rostrum.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/cc.rostrum.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/cc.rostrum.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/cc.rostrum.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/cc.rostrum.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/cc.rostrum.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 20000 total streamlines (min/mean/max length: 41/52/64) Processing pathway 8 of 42... INFO: Have 20000 non-truncated streamlines (min/mean/max length: 41/52/64) Computing path histograms INFO: Total streamline volume is 7059 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 15 segments Computing prior on underlying anatomy (all streamlines) Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.106406 INFO: Points where local peaks in curvature occur are 48 107 43 (curv = 0.138747) 65 100 47 (curv = 0.143741) 70 107 44 (curv = 0.115785) INFO: Intermediate dominant points are 54 120 41 48 107 43 65 100 47 70 108 44 65 118 47 INFO: Final dominant points are 54 120 41 48 107 43 65 100 47 68 114 42 65 118 47 INFO: Selected control points are 54 120 41 48 106 44 64 100 47 69 114 42 65 118 47 INFO: Distances between consecutive points are 16 17 16 8 INFO: Selected control points in test subject's space are 66 118 17 60 103 24 76 96 30 81 111 20 77 116 25 INFO: Distances between consecutive points in test subject's space are 18 18 19 8 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_cpts_5.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.rostrum_avg16_syn_bbr_cpts_5.nii.gz Done in 3.765 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/cc.splenium.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/cc.splenium.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/cc.splenium.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/cc.splenium.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/cc.splenium.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/cc.splenium.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/cc.splenium.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/cc.splenium.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/cc.splenium.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/cc.splenium.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/cc.splenium.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/cc.splenium.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/cc.splenium.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/cc.splenium.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/cc.splenium.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/cc.splenium.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 16414 total streamlines (min/mean/max length: 67/80/94) Processing pathway 9 of 42... INFO: Have 15635 non-truncated streamlines (min/mean/max length: 67/80/94) Computing path histograms INFO: Total streamline volume is 18708 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 24 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0958326 INFO: Points where local peaks in curvature occur are 46 35 68 (curv = 0.17107) 45 37 61 (curv = 0.173215) 42 45 60 (curv = 0.169726) 59 59 56 (curv = 0.120286) 70 54 55 (curv = 0.11446) 75 44 59 (curv = 0.127828) 72 37 60 (curv = 0.251364) INFO: Intermediate dominant points are 53 34 71 45 37 61 45 50 59 59 59 56 70 54 55 72 37 60 65 35 70 INFO: Final dominant points are 53 34 71 45 37 61 51 54 57 59 59 56 70 54 55 72 37 60 65 35 70 INFO: Selected control points are 53 34 71 43 38 62 49 55 58 59 59 55 70 54 56 73 37 61 65 35 70 INFO: Distances between consecutive points are 14 18 11 12 18 12 INFO: Selected control points in test subject's space are 64 32 64 54 35 55 60 52 48 70 56 45 82 51 46 85 34 56 77 33 63 INFO: Distances between consecutive points in test subject's space are 14 19 11 13 20 11 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.splenium_avg16_syn_bbr_cpts_7.nii.gz Done in 4.881 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/mcp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/mcp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/mcp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/mcp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/mcp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/mcp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/mcp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/mcp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/mcp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/mcp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/mcp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/mcp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/mcp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/mcp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/mcp.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/mcp.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 3 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 19997 total streamlines (min/mean/max length: 64/79/103) Processing pathway 10 of 42... INFO: Have 19997 non-truncated streamlines (min/mean/max length: 64/79/103) Computing path histograms INFO: Total streamline volume is 17074 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 23 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0879623 INFO: Points where local peaks in curvature occur are 45 42 28 (curv = 0.279718) 58 65 33 (curv = 0.155128) 64 63 33 (curv = 0.157546) 75 48 27 (curv = 0.157949) INFO: Intermediate dominant points are 52 38 32 45 42 28 48 58 30 58 65 33 64 63 33 75 48 27 69 39 27 INFO: Final dominant points are 52 38 32 45 42 28 51 62 32 58 65 33 64 63 33 75 48 27 69 39 27 INFO: Selected control points are 52 38 32 44 43 28 51 62 32 58 64 33 65 63 32 75 48 27 69 39 27 INFO: Distances between consecutive points are 10 21 7 7 19 11 INFO: Selected control points in test subject's space are 63 29 26 54 35 20 62 56 20 70 57 21 77 56 20 89 40 19 82 29 21 INFO: Distances between consecutive points in test subject's space are 12 22 8 7 20 13 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/mcp_avg16_syn_bbr_cpts_7.nii.gz Done in 4.669 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/lh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/lh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/lh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/lh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/lh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/lh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/lh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/lh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/lh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/lh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/lh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/lh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/lh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/lh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/lh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/lh.af.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 20000 total streamlines (min/mean/max length: 55/95/136) Processing pathway 11 of 42... INFO: Have 20000 non-truncated streamlines (min/mean/max length: 55/95/136) Computing path histograms INFO: Total streamline volume is 23649 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 24 segments Computing prior on underlying anatomy (all streamlines) Selecting 9 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.105382 INFO: Points where local peaks in curvature occur are 82 101 54 (curv = 0.386895) 82 98 58 (curv = 0.144301) 77 90 61 (curv = 0.164632) 80 65 65 (curv = 0.105922) 81 55 58 (curv = 0.106091) 85 53 50 (curv = 0.204158) 92 56 46 (curv = 0.329442) INFO: Intermediate dominant points are 87 101 55 82 101 54 77 90 61 79 82 63 80 65 65 81 55 58 85 53 50 92 56 46 90 61 43 INFO: Final dominant points are 87 101 55 82 101 54 77 90 61 80 71 64 80 65 65 81 55 58 85 53 50 92 56 46 90 61 43 INFO: Selected control points are 87 101 55 83 101 55 78 90 62 80 72 64 80 65 65 81 55 58 85 54 49 92 56 46 90 61 43 INFO: Distances between consecutive points are 4 14 18 7 12 10 8 6 INFO: Selected control points in test subject's space are 99 99 37 94 99 37 89 88 46 92 70 52 91 63 54 92 52 49 96 51 41 105 52 38 102 57 33 INFO: Distances between consecutive points in test subject's space are 5 15 19 7 12 9 10 8 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_cpts_9.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.af_avg16_syn_bbr_cpts_9.nii.gz Done in 6.028 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/rh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/rh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/rh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/rh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/rh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/rh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/rh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/rh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/rh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/rh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/rh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/rh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/rh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/rh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/rh.af.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/rh.af.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 20000 total streamlines (min/mean/max length: 53/96/132) Processing pathway 12 of 42... INFO: Have 20000 non-truncated streamlines (min/mean/max length: 53/96/132) Computing path histograms INFO: Total streamline volume is 22176 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 24 segments Computing prior on underlying anatomy (all streamlines) Selecting 9 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.101348 INFO: Points where local peaks in curvature occur are 38 103 62 (curv = 0.340817) 37 104 60 (curv = 0.315579) 39 102 56 (curv = 0.370128) 40 65 67 (curv = 0.156527) 36 56 64 (curv = 0.137975) INFO: Intermediate dominant points are 34 98 64 39 102 56 41 95 60 42 84 65 40 72 66 40 65 67 36 56 64 31 52 51 23 53 46 INFO: Final dominant points are 34 98 64 39 102 56 42 91 63 41 79 66 40 71 67 40 65 67 36 56 64 28 55 47 23 53 46 WARN: Defaulting to equidistant control points INFO: Selected control points are 34 98 64 37 104 59 40 95 60 43 86 64 40 73 66 39 64 67 36 55 63 32 52 53 23 53 46 INFO: Distances between consecutive points are 8 10 10 13 9 10 11 11 INFO: Selected control points in test subject's space are 44 99 46 49 104 40 51 94 42 54 85 48 50 73 53 49 64 55 47 54 53 43 49 44 31 49 37 INFO: Distances between consecutive points in test subject's space are 9 10 11 14 9 10 11 14 WARN: Could not find satisfactory control point fit - try 1 Selecting 9 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0889754 INFO: Points where local peaks in curvature occur are 42 103 54 (curv = 0.218493) 40 95 62 (curv = 0.119917) 42 91 65 (curv = 0.181736) 36 56 63 (curv = 0.250442) 33 52 52 (curv = 0.210897) INFO: Intermediate dominant points are 34 107 52 42 103 54 40 95 62 42 91 65 38 75 66 39 63 66 36 56 63 33 52 52 27 56 45 INFO: Final dominant points are 34 107 52 42 103 54 40 95 62 42 91 65 39 70 67 38 61 65 36 56 63 33 52 52 27 56 45 INFO: Selected control points are 34 107 52 42 103 53 40 95 62 41 90 65 39 71 66 38 61 66 37 56 62 34 52 52 27 56 45 INFO: Distances between consecutive points are 9 12 6 19 10 6 11 11 INFO: Selected control points in test subject's space are 45 107 32 54 102 34 51 94 44 51 89 48 49 71 53 48 61 55 48 55 52 45 49 43 37 53 35 INFO: Distances between consecutive points in test subject's space are 10 13 6 19 10 7 11 12 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_cpts_9.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.af_avg16_syn_bbr_cpts_9.nii.gz Done in 6.631 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/lh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/lh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/lh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/lh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/lh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/lh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/lh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/lh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/lh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/lh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/lh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/lh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/lh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/lh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/lh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/lh.ar.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 131 total streamlines (min/mean/max length: 30/46/66) Processing pathway 13 of 42... INFO: Have 124 non-truncated streamlines (min/mean/max length: 30/45/66) Computing path histograms INFO: Total streamline volume is 1690 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 11 segments Computing prior on underlying anatomy (all streamlines) Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.11386 INFO: Points where local peaks in curvature occur are 75 66 52 (curv = 0.156002) 79 64 53 (curv = 0.197052) 84 66 50 (curv = 0.122889) INFO: Intermediate dominant points are 67 65 49 79 64 53 86 67 50 92 74 51 INFO: Final dominant points are 67 65 49 79 64 53 88 72 49 92 74 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 65 49 76 65 53 85 67 50 92 74 51 INFO: Distances between consecutive points are 10 10 10 INFO: Selected control points in test subject's space are 78 60 38 87 61 41 97 64 39 105 71 40 INFO: Distances between consecutive points in test subject's space are 10 11 11 WARN: Could not find satisfactory control point fit - try 1 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.127765 INFO: Points where local peaks in curvature occur are 76 64 54 (curv = 0.230819) 85 68 49 (curv = 0.161118) INFO: Intermediate dominant points are 68 65 51 76 64 54 85 68 49 91 74 51 INFO: Final dominant points are 68 65 51 76 64 54 85 68 49 91 74 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 65 51 78 64 54 85 68 49 91 74 51 INFO: Distances between consecutive points are 10 9 9 INFO: Selected control points in test subject's space are 79 61 39 89 61 42 97 65 37 104 71 40 INFO: Distances between consecutive points in test subject's space are 10 10 10 WARN: Could not find satisfactory control point fit - try 2 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0913291 INFO: Points where local peaks in curvature occur are 78 63 55 (curv = 0.25228) 92 76 48 (curv = 0.112464) INFO: Intermediate dominant points are 68 65 48 78 63 55 88 71 49 93 83 46 INFO: Final dominant points are 68 65 48 78 63 55 92 76 48 93 83 46 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 65 48 77 63 54 87 69 49 93 83 46 INFO: Distances between consecutive points are 11 13 16 INFO: Selected control points in test subject's space are 79 60 37 88 60 42 99 66 38 107 80 33 INFO: Distances between consecutive points in test subject's space are 10 13 17 WARN: Could not find satisfactory control point fit - try 3 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0889558 INFO: Points where local peaks in curvature occur are 78 63 54 (curv = 0.267566) INFO: Intermediate dominant points are 66 65 47 78 63 54 86 68 49 93 80 48 INFO: Final dominant points are 66 65 47 78 63 54 89 73 48 93 80 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 65 47 77 63 53 85 68 49 93 80 48 INFO: Distances between consecutive points are 13 10 14 INFO: Selected control points in test subject's space are 77 60 36 88 59 41 97 65 37 107 77 35 INFO: Distances between consecutive points in test subject's space are 12 12 16 WARN: Could not find satisfactory control point fit - try 4 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.144092 INFO: Points where local peaks in curvature occur are 76 64 55 (curv = 0.171817) 79 64 54 (curv = 0.159537) 84 67 47 (curv = 0.231667) INFO: Intermediate dominant points are 69 64 53 76 64 55 84 67 47 93 75 51 INFO: Final dominant points are 69 64 53 76 64 55 84 67 47 93 75 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 64 53 79 63 53 85 68 48 93 75 51 INFO: Distances between consecutive points are 10 9 11 INFO: Selected control points in test subject's space are 80 60 41 90 60 41 97 65 36 106 72 39 INFO: Distances between consecutive points in test subject's space are 10 10 12 WARN: Could not find satisfactory control point fit - try 5 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.14371 INFO: Points where local peaks in curvature occur are 74 65 54 (curv = 0.195041) 77 63 55 (curv = 0.203294) 83 65 51 (curv = 0.150492) INFO: Intermediate dominant points are 66 66 48 77 63 55 83 65 51 88 73 51 INFO: Final dominant points are 66 66 48 77 63 55 83 65 51 88 73 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 66 48 74 65 54 83 64 51 88 73 51 INFO: Distances between consecutive points are 10 10 10 INFO: Selected control points in test subject's space are 77 61 37 85 61 42 94 61 40 101 70 39 INFO: Distances between consecutive points in test subject's space are 9 9 11 WARN: Could not find satisfactory control point fit - try 6 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.109222 INFO: Points where local peaks in curvature occur are 79 63 52 (curv = 0.363122) 85 70 46 (curv = 0.135536) INFO: Intermediate dominant points are 68 65 50 79 63 52 85 70 46 94 82 48 INFO: Final dominant points are 68 65 50 79 63 52 85 70 46 94 82 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 65 50 80 63 52 86 70 47 94 82 48 INFO: Distances between consecutive points are 12 10 14 INFO: Selected control points in test subject's space are 79 61 38 91 60 41 98 67 35 108 79 35 INFO: Distances between consecutive points in test subject's space are 12 12 16 WARN: Could not find satisfactory control point fit - try 7 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.09412 INFO: Points where local peaks in curvature occur are 79 64 51 (curv = 0.176745) 86 69 48 (curv = 0.156014) 91 77 47 (curv = 0.178617) INFO: Intermediate dominant points are 68 64 49 79 64 51 86 69 48 93 81 48 INFO: Final dominant points are 68 64 49 79 64 51 86 69 48 93 81 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 64 49 79 64 51 88 71 48 93 81 48 INFO: Distances between consecutive points are 11 12 11 INFO: Selected control points in test subject's space are 79 59 38 90 60 39 101 68 36 107 78 35 INFO: Distances between consecutive points in test subject's space are 11 14 12 WARN: Could not find satisfactory control point fit - try 8 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.106997 INFO: Points where local peaks in curvature occur are 74 65 51 (curv = 0.178045) 80 66 49 (curv = 0.113529) 84 65 50 (curv = 0.314792) INFO: Intermediate dominant points are 67 65 48 74 65 51 84 65 50 94 73 51 INFO: Final dominant points are 67 65 48 74 65 51 84 65 50 94 73 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 65 48 77 66 50 85 68 50 94 73 51 INFO: Distances between consecutive points are 10 8 10 INFO: Selected control points in test subject's space are 78 60 37 88 62 37 97 65 38 108 70 40 INFO: Distances between consecutive points in test subject's space are 10 10 12 WARN: Could not find satisfactory control point fit - try 9 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.128553 INFO: Points where local peaks in curvature occur are 71 65 54 (curv = 0.232789) 77 65 55 (curv = 0.218626) 85 68 50 (curv = 0.143194) INFO: Intermediate dominant points are 66 66 54 71 65 54 77 65 55 88 73 51 INFO: Final dominant points are 66 66 54 71 65 54 77 65 55 88 73 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 66 54 73 65 54 82 64 52 88 73 51 INFO: Distances between consecutive points are 7 9 11 INFO: Selected control points in test subject's space are 77 63 42 84 61 42 93 61 41 101 70 39 INFO: Distances between consecutive points in test subject's space are 7 9 12 WARN: Could not find satisfactory control point fit - try 10 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.121786 INFO: Points where local peaks in curvature occur are 78 64 52 (curv = 0.173128) 84 67 47 (curv = 0.165037) INFO: Intermediate dominant points are 68 64 49 78 64 52 84 67 47 89 74 48 INFO: Final dominant points are 68 64 49 78 64 52 84 67 47 89 74 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 64 49 76 65 53 83 66 48 89 74 48 INFO: Distances between consecutive points are 9 9 10 INFO: Selected control points in test subject's space are 79 59 38 87 61 41 95 62 36 102 71 36 INFO: Distances between consecutive points in test subject's space are 9 9 11 WARN: Could not find satisfactory control point fit - try 11 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.0910688 INFO: Points where local peaks in curvature occur are 75 66 51 (curv = 0.0933627) 82 65 50 (curv = 0.20928) INFO: Intermediate dominant points are 68 65 48 75 66 51 82 65 50 88 73 48 INFO: Final dominant points are 68 65 48 75 66 51 82 65 50 88 73 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 65 48 76 66 51 83 66 50 88 73 48 INFO: Distances between consecutive points are 9 7 9 INFO: Selected control points in test subject's space are 79 60 37 87 62 38 95 63 38 101 70 36 INFO: Distances between consecutive points in test subject's space are 8 8 9 WARN: Could not find satisfactory control point fit - try 12 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.146571 INFO: Points where local peaks in curvature occur are 75 65 55 (curv = 0.218786) 81 64 51 (curv = 0.197808) INFO: Intermediate dominant points are 68 64 50 75 65 55 81 64 51 87 71 49 INFO: Final dominant points are 68 64 50 75 65 55 81 64 51 87 71 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 64 50 75 65 55 81 64 51 87 71 49 INFO: Distances between consecutive points are 9 7 9 INFO: Selected control points in test subject's space are 79 60 38 86 62 43 92 61 39 100 68 37 INFO: Distances between consecutive points in test subject's space are 9 7 11 WARN: Could not find satisfactory control point fit - try 13 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.114393 INFO: Points where local peaks in curvature occur are 84 66 49 (curv = 0.302078) INFO: Intermediate dominant points are 66 65 47 76 66 50 84 66 49 91 71 50 INFO: Final dominant points are 66 65 47 79 67 49 84 66 49 91 71 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 65 47 75 66 50 84 66 49 91 71 50 INFO: Distances between consecutive points are 10 9 9 INFO: Selected control points in test subject's space are 77 60 36 86 61 37 96 63 37 104 68 39 INFO: Distances between consecutive points in test subject's space are 9 10 10 WARN: Could not find satisfactory control point fit - try 14 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 5 INFO: Minimum allowable curvature at a dominant point is 0.102696 INFO: Points where local peaks in curvature occur are 83 65 50 (curv = 0.288043) INFO: Intermediate dominant points are 67 66 48 76 66 50 83 65 50 89 72 51 INFO: Final dominant points are 67 66 48 79 66 49 83 65 50 89 72 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 66 48 75 66 50 83 65 49 89 72 51 INFO: Distances between consecutive points are 8 8 9 INFO: Selected control points in test subject's space are 78 61 37 86 61 37 94 62 37 102 69 40 INFO: Distances between consecutive points in test subject's space are 8 8 11 WARN: Could not find satisfactory control point fit - try 15 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0808479 INFO: Points where local peaks in curvature occur are 79 63 54 (curv = 0.221503) 82 64 52 (curv = 0.0906143) INFO: Intermediate dominant points are 67 65 49 79 63 54 88 71 49 94 80 49 INFO: Final dominant points are 67 65 49 79 63 54 90 75 48 94 80 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 65 49 78 63 54 87 69 49 94 80 49 INFO: Distances between consecutive points are 12 12 13 INFO: Selected control points in test subject's space are 78 60 38 89 60 42 99 66 38 108 77 36 INFO: Distances between consecutive points in test subject's space are 12 12 14 WARN: Could not find satisfactory control point fit - try 16 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.105971 INFO: Points where local peaks in curvature occur are 79 63 54 (curv = 0.275855) 84 66 48 (curv = 0.262339) 90 73 48 (curv = 0.114425) INFO: Intermediate dominant points are 65 64 50 79 63 54 84 66 48 94 79 47 INFO: Final dominant points are 65 64 50 79 63 54 84 66 48 94 79 47 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 64 50 79 63 54 86 68 48 94 79 47 INFO: Distances between consecutive points are 15 10 14 INFO: Selected control points in test subject's space are 76 60 39 90 60 43 98 65 36 108 76 34 INFO: Distances between consecutive points in test subject's space are 15 12 15 WARN: Could not find satisfactory control point fit - try 17 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0878862 INFO: Points where local peaks in curvature occur are 77 63 54 (curv = 0.384539) 91 73 48 (curv = 0.107122) INFO: Intermediate dominant points are 64 64 49 77 63 54 87 68 50 96 75 50 INFO: Final dominant points are 64 64 49 77 63 54 91 73 48 96 75 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 64 64 49 76 63 53 87 68 50 96 75 50 INFO: Distances between consecutive points are 13 12 11 INFO: Selected control points in test subject's space are 75 60 38 87 59 41 99 65 39 110 72 38 INFO: Distances between consecutive points in test subject's space are 12 14 13 WARN: Could not find satisfactory control point fit - try 18 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.129738 INFO: Points where local peaks in curvature occur are 77 64 56 (curv = 0.370154) 83 65 50 (curv = 0.216037) 88 70 49 (curv = 0.172908) INFO: Intermediate dominant points are 65 66 49 77 64 56 88 70 49 94 74 52 INFO: Final dominant points are 65 66 49 77 64 56 88 70 49 94 74 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 66 49 75 64 55 84 67 50 94 74 52 INFO: Distances between consecutive points are 12 11 12 INFO: Selected control points in test subject's space are 76 62 38 86 61 43 96 64 38 108 71 41 INFO: Distances between consecutive points in test subject's space are 11 12 14 WARN: Could not find satisfactory control point fit - try 19 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.113558 INFO: Points where local peaks in curvature occur are 76 63 55 (curv = 0.351123) 83 65 50 (curv = 0.192343) INFO: Intermediate dominant points are 65 65 49 76 63 55 84 67 49 90 79 47 INFO: Final dominant points are 65 65 49 76 63 55 87 72 50 90 79 47 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 65 49 75 63 55 83 66 49 90 79 47 INFO: Distances between consecutive points are 12 10 15 INFO: Selected control points in test subject's space are 76 61 38 86 60 43 95 63 37 103 76 34 INFO: Distances between consecutive points in test subject's space are 11 11 16 WARN: Could not find satisfactory control point fit - try 20 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.150164 INFO: Points where local peaks in curvature occur are 76 61 58 (curv = 0.5728) 82 64 50 (curv = 0.223499) INFO: Intermediate dominant points are 67 63 51 76 61 58 82 64 50 94 75 52 INFO: Final dominant points are 67 63 51 76 61 58 82 64 50 94 75 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 63 51 77 61 58 85 68 51 94 75 52 INFO: Distances between consecutive points are 12 13 11 INFO: Selected control points in test subject's space are 78 59 40 88 59 47 97 65 40 108 72 41 INFO: Distances between consecutive points in test subject's space are 12 13 13 WARN: Could not find satisfactory control point fit - try 21 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.10475 INFO: Points where local peaks in curvature occur are 77 65 54 (curv = 0.179033) 82 65 51 (curv = 0.209135) INFO: Intermediate dominant points are 69 64 52 77 65 54 82 65 51 94 75 53 INFO: Final dominant points are 69 64 52 77 65 54 82 65 51 94 75 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 64 52 77 64 54 86 68 49 94 75 53 INFO: Distances between consecutive points are 8 11 11 INFO: Selected control points in test subject's space are 80 60 40 88 61 42 98 65 37 108 72 42 INFO: Distances between consecutive points in test subject's space are 8 12 13 WARN: Could not find satisfactory control point fit - try 22 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.10895 INFO: Points where local peaks in curvature occur are 76 62 55 (curv = 0.309377) 85 67 49 (curv = 0.167742) INFO: Intermediate dominant points are 69 63 49 76 62 55 85 67 49 95 80 48 INFO: Final dominant points are 69 63 49 76 62 55 85 67 49 95 80 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 63 49 79 63 54 85 68 48 95 80 48 INFO: Distances between consecutive points are 11 10 16 INFO: Selected control points in test subject's space are 80 59 38 90 60 43 97 65 36 109 77 35 INFO: Distances between consecutive points in test subject's space are 11 11 17 WARN: Could not find satisfactory control point fit - try 23 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.110564 INFO: Points where local peaks in curvature occur are 75 64 57 (curv = 0.393495) 81 64 53 (curv = 0.130531) INFO: Intermediate dominant points are 67 65 51 75 64 57 81 64 53 91 81 49 INFO: Final dominant points are 67 65 51 75 64 57 81 64 53 91 81 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 65 51 76 64 56 85 68 50 91 81 49 INFO: Distances between consecutive points are 10 12 14 INFO: Selected control points in test subject's space are 78 61 39 87 61 44 97 65 38 104 78 36 INFO: Distances between consecutive points in test subject's space are 10 12 15 WARN: Could not find satisfactory control point fit - try 24 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0975311 INFO: Points where local peaks in curvature occur are 79 63 52 (curv = 0.243805) 84 67 48 (curv = 0.120395) 90 74 48 (curv = 0.12025) INFO: Intermediate dominant points are 67 66 49 79 63 52 90 74 48 94 81 48 INFO: Final dominant points are 67 66 49 79 63 52 90 74 48 94 81 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 66 49 79 63 52 88 71 48 94 81 48 INFO: Distances between consecutive points are 13 13 12 INFO: Selected control points in test subject's space are 77 61 37 90 60 40 101 68 36 108 78 35 INFO: Distances between consecutive points in test subject's space are 13 14 12 WARN: Could not find satisfactory control point fit - try 25 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.124191 INFO: Points where local peaks in curvature occur are 75 65 51 (curv = 0.15854) 81 65 50 (curv = 0.131917) 86 70 48 (curv = 0.174296) INFO: Intermediate dominant points are 69 64 51 75 65 51 86 70 48 92 75 52 INFO: Final dominant points are 69 64 51 75 65 51 86 70 48 92 75 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 64 51 75 65 51 85 69 48 92 75 52 INFO: Distances between consecutive points are 6 11 10 INFO: Selected control points in test subject's space are 80 60 39 86 61 38 97 66 36 105 72 41 INFO: Distances between consecutive points in test subject's space are 6 12 11 WARN: Could not find satisfactory control point fit - try 26 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0889552 INFO: Points where local peaks in curvature occur are 80 62 53 (curv = 0.234657) 83 65 49 (curv = 0.15428) INFO: Intermediate dominant points are 65 66 53 80 62 53 87 69 48 93 81 48 INFO: Final dominant points are 65 66 53 80 62 53 91 75 47 93 81 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 66 53 79 62 53 87 69 48 93 81 48 INFO: Distances between consecutive points are 15 12 13 INFO: Selected control points in test subject's space are 76 62 41 90 59 42 99 66 36 107 78 35 INFO: Distances between consecutive points in test subject's space are 14 13 14 WARN: Could not find satisfactory control point fit - try 27 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0903944 INFO: Points where local peaks in curvature occur are 78 62 54 (curv = 0.320363) 87 68 49 (curv = 0.142117) INFO: Intermediate dominant points are 67 65 53 78 62 54 87 68 49 95 80 49 INFO: Final dominant points are 67 65 53 78 62 54 87 68 49 95 80 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 65 53 79 63 54 87 69 48 95 80 49 INFO: Distances between consecutive points are 12 12 14 INFO: Selected control points in test subject's space are 78 61 41 90 60 43 99 66 36 109 77 36 INFO: Distances between consecutive points in test subject's space are 12 13 15 WARN: Could not find satisfactory control point fit - try 28 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0977941 INFO: Points where local peaks in curvature occur are 77 63 56 (curv = 0.384068) 80 63 52 (curv = 0.126564) INFO: Intermediate dominant points are 64 66 50 77 63 56 87 68 50 96 76 50 INFO: Final dominant points are 64 66 50 77 63 56 93 71 50 96 76 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 64 66 50 76 63 56 86 67 50 96 76 50 INFO: Distances between consecutive points are 14 12 13 INFO: Selected control points in test subject's space are 75 62 39 87 60 44 98 64 39 110 73 38 INFO: Distances between consecutive points in test subject's space are 13 13 15 WARN: Could not find satisfactory control point fit - try 29 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.12874 INFO: Points where local peaks in curvature occur are 80 58 54 (curv = 0.671496) INFO: Intermediate dominant points are 71 65 53 80 58 54 86 68 48 96 74 51 INFO: Final dominant points are 71 65 53 80 58 54 90 73 49 96 74 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 71 65 53 80 58 54 86 68 48 96 74 51 INFO: Distances between consecutive points are 11 13 12 INFO: Selected control points in test subject's space are 81 61 41 91 55 44 98 65 36 110 71 40 INFO: Distances between consecutive points in test subject's space are 12 15 14 WARN: Could not find satisfactory control point fit - try 30 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.123519 INFO: Points where local peaks in curvature occur are 79 62 55 (curv = 0.320146) 83 64 51 (curv = 0.142652) INFO: Intermediate dominant points are 69 64 50 79 62 55 86 68 51 95 75 49 INFO: Final dominant points are 69 64 50 79 62 55 92 69 50 95 75 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 64 50 78 62 55 86 68 51 95 75 49 INFO: Distances between consecutive points are 10 11 12 INFO: Selected control points in test subject's space are 80 60 38 89 59 44 98 65 40 109 72 37 INFO: Distances between consecutive points in test subject's space are 11 12 13 WARN: Could not find satisfactory control point fit - try 31 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0899078 INFO: Points where local peaks in curvature occur are 73 64 53 (curv = 0.117991) 77 63 50 (curv = 0.148287) 82 65 50 (curv = 0.134416) 90 74 48 (curv = 0.175063) INFO: Intermediate dominant points are 66 66 51 77 63 50 90 74 48 94 81 47 INFO: Final dominant points are 66 66 51 77 63 50 90 74 48 94 81 47 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 66 51 77 63 50 88 70 48 94 81 47 INFO: Distances between consecutive points are 11 13 13 INFO: Selected control points in test subject's space are 77 62 39 88 59 38 100 67 36 108 78 34 INFO: Distances between consecutive points in test subject's space are 11 15 14 WARN: Could not find satisfactory control point fit - try 32 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.13372 INFO: Points where local peaks in curvature occur are 74 65 53 (curv = 0.196976) 78 60 55 (curv = 0.674159) 84 62 50 (curv = 0.161854) INFO: Intermediate dominant points are 68 65 51 78 60 55 86 69 48 94 79 50 INFO: Final dominant points are 68 65 51 78 60 55 89 74 47 94 79 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 65 51 78 60 55 86 69 48 94 79 50 INFO: Distances between consecutive points are 12 14 13 INFO: Selected control points in test subject's space are 79 61 39 89 57 44 98 66 36 108 76 38 INFO: Distances between consecutive points in test subject's space are 12 15 14 WARN: Could not find satisfactory control point fit - try 33 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.133419 INFO: Points where local peaks in curvature occur are 76 65 53 (curv = 0.15709) 82 64 52 (curv = 0.208384) 89 71 50 (curv = 0.230538) INFO: Intermediate dominant points are 67 63 49 82 64 52 89 71 50 96 71 54 INFO: Final dominant points are 67 63 49 82 64 52 89 71 50 96 71 54 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 63 49 76 65 53 86 67 51 96 71 54 INFO: Distances between consecutive points are 10 10 11 INFO: Selected control points in test subject's space are 78 59 38 87 61 41 98 64 40 110 68 44 INFO: Distances between consecutive points in test subject's space are 10 11 13 WARN: Could not find satisfactory control point fit - try 34 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.109384 INFO: Points where local peaks in curvature occur are 72 66 48 (curv = 0.182463) 80 64 52 (curv = 0.293262) INFO: Intermediate dominant points are 66 63 49 80 64 52 88 70 49 94 80 46 INFO: Final dominant points are 66 63 49 80 64 52 91 76 48 94 80 46 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 63 49 76 66 52 87 69 49 94 80 46 INFO: Distances between consecutive points are 11 12 13 INFO: Selected control points in test subject's space are 77 59 38 87 62 39 99 66 38 108 77 33 INFO: Distances between consecutive points in test subject's space are 10 13 15 WARN: Could not find satisfactory control point fit - try 35 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0928183 INFO: Points where local peaks in curvature occur are 78 62 54 (curv = 0.291962) 81 64 52 (curv = 0.122451) 88 68 50 (curv = 0.151233) INFO: Intermediate dominant points are 67 65 48 78 62 54 88 69 50 96 76 49 INFO: Final dominant points are 67 65 48 78 62 54 92 71 51 96 76 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 65 48 77 63 54 87 68 50 96 76 49 INFO: Distances between consecutive points are 12 12 12 INFO: Selected control points in test subject's space are 78 60 37 88 60 42 99 65 39 110 73 37 INFO: Distances between consecutive points in test subject's space are 11 12 14 WARN: Could not find satisfactory control point fit - try 36 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.142394 INFO: Points where local peaks in curvature occur are 79 62 54 (curv = 0.549032) 88 71 48 (curv = 0.242158) INFO: Intermediate dominant points are 69 62 49 79 62 54 88 71 48 96 70 52 INFO: Final dominant points are 69 62 49 79 62 54 88 71 48 96 70 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 62 49 79 62 54 86 69 48 96 70 52 INFO: Distances between consecutive points are 11 12 11 INFO: Selected control points in test subject's space are 80 58 38 90 59 43 98 66 36 110 67 42 INFO: Distances between consecutive points in test subject's space are 11 13 13 WARN: Could not find satisfactory control point fit - try 37 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.111394 INFO: Points where local peaks in curvature occur are 71 66 53 (curv = 0.163664) 75 65 54 (curv = 0.118201) 80 64 52 (curv = 0.14031) INFO: Intermediate dominant points are 66 63 52 71 66 53 80 64 52 90 75 49 INFO: Final dominant points are 66 63 52 71 66 53 80 64 52 90 75 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 63 52 73 65 53 83 67 51 90 75 49 INFO: Distances between consecutive points are 7 10 11 INFO: Selected control points in test subject's space are 77 59 41 83 61 41 95 64 39 103 72 37 INFO: Distances between consecutive points in test subject's space are 6 13 11 WARN: Could not find satisfactory control point fit - try 38 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.146416 INFO: Points where local peaks in curvature occur are 80 59 54 (curv = 0.650101) INFO: Intermediate dominant points are 68 65 52 80 59 54 82 64 50 90 74 49 INFO: Final dominant points are 68 65 52 80 59 54 86 68 48 90 74 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 65 52 77 62 53 82 63 51 90 74 49 INFO: Distances between consecutive points are 10 5 14 INFO: Selected control points in test subject's space are 79 61 40 88 58 41 93 60 40 103 71 37 INFO: Distances between consecutive points in test subject's space are 10 5 15 WARN: Could not find satisfactory control point fit - try 39 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.135296 INFO: Points where local peaks in curvature occur are 80 61 55 (curv = 0.359415) 87 69 50 (curv = 0.179739) INFO: Intermediate dominant points are 67 65 51 80 61 55 87 69 50 89 75 51 INFO: Final dominant points are 67 65 51 80 61 55 87 69 50 89 75 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 65 51 78 62 56 84 67 51 89 75 51 INFO: Distances between consecutive points are 12 9 9 INFO: Selected control points in test subject's space are 78 61 39 89 59 45 96 64 40 102 72 39 INFO: Distances between consecutive points in test subject's space are 13 10 10 WARN: Could not find satisfactory control point fit - try 40 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.122186 INFO: Points where local peaks in curvature occur are 73 65 53 (curv = 0.123033) 77 62 55 (curv = 0.414025) 92 71 52 (curv = 0.199992) INFO: Intermediate dominant points are 65 63 49 77 62 55 92 71 52 95 77 48 INFO: Final dominant points are 65 63 49 77 62 55 92 71 52 95 77 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 63 49 77 63 55 88 68 51 95 77 48 INFO: Distances between consecutive points are 13 13 12 INFO: Selected control points in test subject's space are 76 59 38 88 60 43 100 65 40 109 74 36 INFO: Distances between consecutive points in test subject's space are 13 13 13 WARN: Could not find satisfactory control point fit - try 41 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.131214 INFO: Points where local peaks in curvature occur are 77 64 54 (curv = 0.239317) 79 63 52 (curv = 0.217911) 82 64 49 (curv = 0.143775) INFO: Intermediate dominant points are 66 66 52 77 64 54 83 66 48 88 74 50 INFO: Final dominant points are 66 66 52 77 64 54 86 70 47 88 74 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 66 52 77 64 54 83 65 49 88 74 50 INFO: Distances between consecutive points are 11 8 10 INFO: Selected control points in test subject's space are 77 62 40 88 61 42 94 62 37 101 71 38 INFO: Distances between consecutive points in test subject's space are 11 8 11 WARN: Could not find satisfactory control point fit - try 42 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.137195 INFO: Points where local peaks in curvature occur are 76 64 53 (curv = 0.146404) 80 62 53 (curv = 0.347151) INFO: Intermediate dominant points are 67 64 50 80 62 53 84 66 48 89 73 48 INFO: Final dominant points are 67 64 50 80 62 53 87 69 48 89 73 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 64 50 77 64 53 84 65 49 89 73 48 INFO: Distances between consecutive points are 10 8 9 INFO: Selected control points in test subject's space are 78 60 39 88 60 41 95 62 38 102 70 36 INFO: Distances between consecutive points in test subject's space are 10 8 11 WARN: Could not find satisfactory control point fit - try 43 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.106765 INFO: Points where local peaks in curvature occur are 74 66 51 (curv = 0.158065) 80 63 52 (curv = 0.223142) INFO: Intermediate dominant points are 66 63 48 80 63 52 86 66 50 96 71 53 INFO: Final dominant points are 66 63 48 80 63 52 90 70 50 96 71 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 63 48 75 65 51 86 66 50 96 71 53 INFO: Distances between consecutive points are 10 11 12 INFO: Selected control points in test subject's space are 77 59 37 86 61 38 98 63 39 110 68 42 INFO: Distances between consecutive points in test subject's space are 9 12 13 WARN: Could not find satisfactory control point fit - try 44 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.122416 INFO: Points where local peaks in curvature occur are 76 63 55 (curv = 0.328162) 83 66 48 (curv = 0.134445) INFO: Intermediate dominant points are 66 66 51 76 63 55 83 66 48 88 73 48 INFO: Final dominant points are 66 66 51 76 63 55 83 66 48 88 73 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 66 51 75 63 54 82 65 50 88 73 48 INFO: Distances between consecutive points are 10 8 10 INFO: Selected control points in test subject's space are 77 62 39 86 59 42 93 62 38 101 70 36 INFO: Distances between consecutive points in test subject's space are 10 9 11 WARN: Could not find satisfactory control point fit - try 45 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.121214 INFO: Points where local peaks in curvature occur are 76 62 55 (curv = 0.243208) 85 65 49 (curv = 0.163132) INFO: Intermediate dominant points are 66 67 53 76 62 55 85 65 49 88 73 48 INFO: Final dominant points are 66 67 53 76 62 55 85 65 49 88 73 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 67 53 75 63 55 84 65 50 88 73 48 INFO: Distances between consecutive points are 10 10 9 INFO: Selected control points in test subject's space are 77 63 41 86 60 43 95 62 39 101 70 36 INFO: Distances between consecutive points in test subject's space are 10 10 10 WARN: Could not find satisfactory control point fit - try 46 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.139736 INFO: Points where local peaks in curvature occur are 76 64 58 (curv = 0.736363) INFO: Intermediate dominant points are 69 64 52 76 64 58 87 71 51 93 84 46 INFO: Final dominant points are 69 64 52 76 64 58 89 77 50 93 84 46 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 64 52 77 63 58 86 70 51 93 84 46 INFO: Distances between consecutive points are 10 13 16 INFO: Selected control points in test subject's space are 80 60 40 88 60 47 98 67 39 107 81 32 INFO: Distances between consecutive points in test subject's space are 11 15 18 WARN: Could not find satisfactory control point fit - try 47 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.138329 INFO: Points where local peaks in curvature occur are 71 65 54 (curv = 0.145969) 78 61 56 (curv = 0.477517) 84 68 48 (curv = 0.187177) INFO: Intermediate dominant points are 66 66 57 78 61 56 84 68 48 92 73 52 INFO: Final dominant points are 66 66 57 78 61 56 84 68 48 92 73 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 66 57 76 62 56 83 65 49 92 73 52 INFO: Distances between consecutive points are 11 10 12 INFO: Selected control points in test subject's space are 77 63 45 87 59 45 94 62 37 105 70 41 INFO: Distances between consecutive points in test subject's space are 11 11 14 WARN: Could not find satisfactory control point fit - try 48 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.140285 INFO: Points where local peaks in curvature occur are 73 66 48 (curv = 0.342555) 75 63 51 (curv = 0.170326) 79 62 54 (curv = 0.406548) INFO: Intermediate dominant points are 67 63 48 79 62 54 86 67 50 95 71 53 INFO: Final dominant points are 67 63 48 79 62 54 91 71 50 95 71 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 63 48 75 63 52 85 66 50 95 71 53 INFO: Distances between consecutive points are 9 11 12 INFO: Selected control points in test subject's space are 78 59 37 86 59 40 97 63 39 109 68 42 INFO: Distances between consecutive points in test subject's space are 9 12 13 WARN: Could not find satisfactory control point fit - try 49 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.132357 INFO: Points where local peaks in curvature occur are 76 60 57 (curv = 0.434719) 84 61 51 (curv = 0.232275) INFO: Intermediate dominant points are 66 63 50 76 60 57 84 61 51 94 76 51 INFO: Final dominant points are 66 63 50 76 60 57 84 61 51 94 76 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 63 50 77 60 57 84 66 48 94 76 51 INFO: Distances between consecutive points are 13 13 14 INFO: Selected control points in test subject's space are 77 59 39 88 57 46 96 62 36 108 73 39 INFO: Distances between consecutive points in test subject's space are 13 14 17 WARN: Could not find satisfactory control point fit - try 50 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.130729 INFO: Points where local peaks in curvature occur are 74 65 54 (curv = 0.17915) 77 60 57 (curv = 0.635414) 84 62 51 (curv = 0.147653) INFO: Intermediate dominant points are 65 63 52 77 60 57 84 62 51 95 79 49 INFO: Final dominant points are 65 63 52 77 60 57 84 62 51 95 79 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 63 52 77 60 57 86 67 47 95 79 49 INFO: Distances between consecutive points are 13 15 15 INFO: Selected control points in test subject's space are 76 59 41 88 57 46 98 63 35 109 76 37 INFO: Distances between consecutive points in test subject's space are 13 16 17 WARN: Could not find satisfactory control point fit - try 51 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0911548 INFO: Points where local peaks in curvature occur are 79 63 55 (curv = 0.208533) 82 64 51 (curv = 0.140876) 88 70 49 (curv = 0.120347) INFO: Intermediate dominant points are 68 66 55 79 63 55 88 70 49 94 76 53 INFO: Final dominant points are 68 66 55 79 63 55 88 70 49 94 76 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 66 55 79 63 55 87 69 49 94 76 53 INFO: Distances between consecutive points are 11 12 11 INFO: Selected control points in test subject's space are 79 63 43 90 60 44 99 66 38 108 73 42 INFO: Distances between consecutive points in test subject's space are 11 12 12 WARN: Could not find satisfactory control point fit - try 52 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.100348 INFO: Points where local peaks in curvature occur are 79 64 52 (curv = 0.151996) 85 67 48 (curv = 0.18166) INFO: Intermediate dominant points are 68 69 55 77 65 53 85 67 48 92 76 50 INFO: Final dominant points are 68 69 55 80 65 52 85 67 48 92 76 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 69 55 76 65 53 85 68 48 92 76 50 INFO: Distances between consecutive points are 9 11 11 INFO: Selected control points in test subject's space are 78 66 42 87 61 41 97 65 36 105 73 38 INFO: Distances between consecutive points in test subject's space are 10 12 11 WARN: Could not find satisfactory control point fit - try 53 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.135223 INFO: Points where local peaks in curvature occur are 74 65 54 (curv = 0.219813) 80 63 53 (curv = 0.174249) 85 65 50 (curv = 0.20128) 88 68 51 (curv = 0.20899) INFO: Intermediate dominant points are 67 65 49 74 65 54 88 68 51 96 70 56 INFO: Final dominant points are 67 65 49 74 65 54 88 68 51 96 70 56 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 65 49 78 64 53 87 67 51 96 70 56 INFO: Distances between consecutive points are 12 10 11 INFO: Selected control points in test subject's space are 78 60 38 89 61 41 99 64 40 110 67 46 INFO: Distances between consecutive points in test subject's space are 11 10 13 WARN: Could not find satisfactory control point fit - try 54 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.132529 INFO: Points where local peaks in curvature occur are 76 64 55 (curv = 0.316568) 83 67 50 (curv = 0.200883) INFO: Intermediate dominant points are 66 63 47 76 64 55 83 67 50 87 72 51 INFO: Final dominant points are 66 63 47 76 64 55 83 67 50 87 72 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 63 47 73 65 54 81 65 52 87 72 51 INFO: Distances between consecutive points are 10 8 9 INFO: Selected control points in test subject's space are 77 58 36 84 61 42 93 62 40 100 69 39 INFO: Distances between consecutive points in test subject's space are 10 9 10 WARN: Could not find satisfactory control point fit - try 55 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.124431 INFO: Points where local peaks in curvature occur are 78 64 51 (curv = 0.257538) 83 67 48 (curv = 0.208848) INFO: Intermediate dominant points are 66 65 49 78 64 51 86 71 50 93 75 52 INFO: Final dominant points are 66 65 49 78 64 51 90 73 50 93 75 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 65 49 77 64 51 85 69 49 93 75 52 INFO: Distances between consecutive points are 11 10 10 INFO: Selected control points in test subject's space are 77 61 38 88 60 39 97 66 37 106 72 41 INFO: Distances between consecutive points in test subject's space are 11 11 12 WARN: Could not find satisfactory control point fit - try 56 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.098327 INFO: Points where local peaks in curvature occur are 78 64 52 (curv = 0.18136) 83 66 48 (curv = 0.167209) 87 69 48 (curv = 0.143343) 88 72 46 (curv = 0.105694) INFO: Intermediate dominant points are 67 63 48 78 64 52 88 72 46 94 82 48 INFO: Final dominant points are 67 63 48 78 64 52 88 72 46 94 82 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 63 48 80 64 51 87 71 47 94 82 48 INFO: Distances between consecutive points are 13 11 13 INFO: Selected control points in test subject's space are 78 59 37 91 61 39 99 68 35 108 79 35 INFO: Distances between consecutive points in test subject's space are 13 11 14 WARN: Could not find satisfactory control point fit - try 57 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.119806 INFO: Points where local peaks in curvature occur are 76 67 49 (curv = 0.253343) 80 63 51 (curv = 0.376198) INFO: Intermediate dominant points are 64 68 51 80 63 51 86 69 48 96 77 51 INFO: Final dominant points are 64 68 51 80 63 51 90 74 48 96 77 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 64 68 51 76 67 49 85 68 48 96 77 51 INFO: Distances between consecutive points are 12 9 15 INFO: Selected control points in test subject's space are 75 64 39 87 63 36 97 65 36 110 74 39 INFO: Distances between consecutive points in test subject's space are 12 10 16 WARN: Could not find satisfactory control point fit - try 58 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.127891 INFO: Points where local peaks in curvature occur are 73 68 50 (curv = 0.190204) 81 64 51 (curv = 0.202624) 83 63 49 (curv = 0.313128) INFO: Intermediate dominant points are 65 65 48 83 63 49 88 72 47 93 84 44 INFO: Final dominant points are 65 65 48 83 63 49 92 78 48 93 84 44 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 65 48 78 66 51 88 70 47 93 84 44 INFO: Distances between consecutive points are 13 11 15 INFO: Selected control points in test subject's space are 76 60 37 89 62 39 100 67 35 107 80 30 INFO: Distances between consecutive points in test subject's space are 13 13 16 WARN: Could not find satisfactory control point fit - try 59 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0688289 INFO: Points where local peaks in curvature occur are 73 64 52 (curv = 0.0871978) 83 65 49 (curv = 0.148825) INFO: Intermediate dominant points are 65 66 56 83 65 49 88 69 49 93 80 47 INFO: Final dominant points are 65 66 56 83 65 49 91 75 48 93 80 47 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 66 56 76 63 50 88 69 49 93 80 47 INFO: Distances between consecutive points are 13 13 12 INFO: Selected control points in test subject's space are 76 63 44 87 59 38 100 66 38 107 77 34 INFO: Distances between consecutive points in test subject's space are 13 15 14 WARN: Could not find satisfactory control point fit - try 60 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.160963 INFO: Points where local peaks in curvature occur are 80 59 54 (curv = 0.575899) INFO: Intermediate dominant points are 68 65 52 80 59 54 83 65 50 87 72 49 INFO: Final dominant points are 68 65 52 80 59 54 85 68 49 87 72 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 65 52 77 61 54 82 64 50 87 72 49 INFO: Distances between consecutive points are 10 7 9 INFO: Selected control points in test subject's space are 79 61 40 88 58 43 93 61 38 100 69 37 INFO: Distances between consecutive points in test subject's space are 10 8 11 WARN: Could not find satisfactory control point fit - try 61 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.13808 INFO: Points where local peaks in curvature occur are 77 67 50 (curv = 0.203079) 81 63 52 (curv = 0.426033) INFO: Intermediate dominant points are 65 63 48 77 67 50 81 63 52 95 72 53 INFO: Final dominant points are 65 63 48 77 67 50 81 63 52 95 72 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 63 48 77 67 50 85 66 50 95 72 53 INFO: Distances between consecutive points are 13 8 12 INFO: Selected control points in test subject's space are 76 59 37 88 63 37 97 63 39 109 69 42 INFO: Distances between consecutive points in test subject's space are 13 9 14 WARN: Could not find satisfactory control point fit - try 62 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.109357 INFO: Points where local peaks in curvature occur are 82 65 48 (curv = 0.19491) INFO: Intermediate dominant points are 68 64 51 78 64 51 82 65 48 91 75 49 INFO: Final dominant points are 68 64 51 78 64 51 82 65 48 91 75 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 64 51 77 64 51 84 67 48 91 75 49 INFO: Distances between consecutive points are 9 8 11 INFO: Selected control points in test subject's space are 79 60 39 88 60 39 96 64 36 104 72 37 INFO: Distances between consecutive points in test subject's space are 9 9 11 WARN: Could not find satisfactory control point fit - try 63 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.138388 INFO: Points where local peaks in curvature occur are 75 65 57 (curv = 0.252645) 79 63 54 (curv = 0.179559) 86 68 49 (curv = 0.156802) INFO: Intermediate dominant points are 66 66 53 75 65 57 86 68 49 88 75 51 INFO: Final dominant points are 66 66 53 75 65 57 86 68 49 88 75 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 66 53 76 65 56 84 65 51 88 75 51 INFO: Distances between consecutive points are 10 9 11 INFO: Selected control points in test subject's space are 77 62 41 87 62 44 96 62 40 101 72 39 INFO: Distances between consecutive points in test subject's space are 10 10 11 WARN: Could not find satisfactory control point fit - try 64 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.132277 INFO: Points where local peaks in curvature occur are 77 69 47 (curv = 0.249918) 81 66 49 (curv = 0.236585) INFO: Intermediate dominant points are 65 66 54 77 69 47 86 69 49 96 76 51 INFO: Final dominant points are 65 66 54 77 69 47 91 74 49 96 76 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 66 54 75 69 47 86 69 49 96 76 51 INFO: Distances between consecutive points are 13 11 12 INFO: Selected control points in test subject's space are 76 63 42 86 65 33 98 66 37 110 73 39 INFO: Distances between consecutive points in test subject's space are 14 13 14 WARN: Could not find satisfactory control point fit - try 65 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.107233 INFO: Points where local peaks in curvature occur are 78 64 54 (curv = 0.207397) 83 67 49 (curv = 0.19994) INFO: Intermediate dominant points are 69 68 55 78 64 54 83 67 49 89 73 49 INFO: Final dominant points are 69 68 55 78 64 54 83 67 49 89 73 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 68 55 77 65 54 83 66 49 89 73 49 INFO: Distances between consecutive points are 9 8 9 INFO: Selected control points in test subject's space are 79 65 42 88 62 42 95 63 37 102 70 37 INFO: Distances between consecutive points in test subject's space are 9 9 10 WARN: Could not find satisfactory control point fit - try 66 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.135957 INFO: Points where local peaks in curvature occur are 71 65 50 (curv = 0.294601) 73 65 51 (curv = 0.249016) 83 64 49 (curv = 0.254206) INFO: Intermediate dominant points are 64 69 52 71 65 50 83 64 49 96 74 50 INFO: Final dominant points are 64 69 52 71 65 50 83 64 49 96 74 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 64 69 52 74 65 51 85 66 49 96 74 50 INFO: Distances between consecutive points are 11 11 14 INFO: Selected control points in test subject's space are 75 65 40 84 61 38 97 63 38 110 71 39 INFO: Distances between consecutive points in test subject's space are 10 13 15 WARN: Could not find satisfactory control point fit - try 67 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.104825 INFO: Points where local peaks in curvature occur are 76 63 59 (curv = 0.317871) 85 67 49 (curv = 0.107796) INFO: Intermediate dominant points are 66 65 54 76 63 59 85 67 49 96 77 48 INFO: Final dominant points are 66 65 54 76 63 59 85 67 49 96 77 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 65 54 78 62 56 88 72 48 96 77 48 INFO: Distances between consecutive points are 13 16 9 INFO: Selected control points in test subject's space are 77 62 42 89 59 45 101 69 36 110 74 36 INFO: Distances between consecutive points in test subject's space are 13 18 10 WARN: Could not find satisfactory control point fit - try 68 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.097043 INFO: Points where local peaks in curvature occur are 84 66 50 (curv = 0.124902) INFO: Intermediate dominant points are 69 63 50 84 66 50 87 70 49 93 71 52 INFO: Final dominant points are 69 63 50 84 66 50 90 73 51 93 71 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 63 50 80 65 50 87 70 49 93 71 52 INFO: Distances between consecutive points are 11 9 7 INFO: Selected control points in test subject's space are 80 59 39 91 61 38 99 67 37 106 68 41 INFO: Distances between consecutive points in test subject's space are 11 10 8 WARN: Could not find satisfactory control point fit - try 69 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.124558 INFO: Points where local peaks in curvature occur are 73 65 50 (curv = 0.328055) 81 62 52 (curv = 0.254455) INFO: Intermediate dominant points are 68 64 48 81 62 52 89 68 50 96 70 53 INFO: Final dominant points are 68 64 48 81 62 52 92 71 50 96 70 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 64 48 77 63 52 87 67 50 96 70 53 INFO: Distances between consecutive points are 10 11 10 INFO: Selected control points in test subject's space are 79 59 37 88 59 40 99 64 39 110 67 43 INFO: Distances between consecutive points in test subject's space are 9 12 12 WARN: Could not find satisfactory control point fit - try 70 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0981406 INFO: Points where local peaks in curvature occur are 76 67 49 (curv = 0.161483) 81 65 50 (curv = 0.152881) 89 71 49 (curv = 0.103311) INFO: Intermediate dominant points are 68 63 50 76 67 49 89 71 49 96 77 48 INFO: Final dominant points are 68 63 50 76 67 49 89 71 49 96 77 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 63 50 77 66 49 87 69 49 96 77 48 INFO: Distances between consecutive points are 10 10 12 INFO: Selected control points in test subject's space are 79 59 39 88 62 36 99 66 38 110 74 36 INFO: Distances between consecutive points in test subject's space are 10 12 14 WARN: Could not find satisfactory control point fit - try 71 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.120924 INFO: Points where local peaks in curvature occur are 77 63 56 (curv = 0.279518) 84 66 49 (curv = 0.318466) INFO: Intermediate dominant points are 68 69 54 77 63 56 84 66 49 92 80 48 INFO: Final dominant points are 68 69 54 77 63 56 84 66 49 92 80 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 69 54 77 63 56 85 67 49 92 80 48 INFO: Distances between consecutive points are 11 11 15 INFO: Selected control points in test subject's space are 78 65 41 88 60 44 97 64 37 106 77 35 INFO: Distances between consecutive points in test subject's space are 12 12 16 WARN: Could not find satisfactory control point fit - try 72 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.110799 INFO: Points where local peaks in curvature occur are 76 66 51 (curv = 0.1585) 83 65 50 (curv = 0.222462) INFO: Intermediate dominant points are 67 64 48 76 66 51 83 65 50 93 73 52 INFO: Final dominant points are 67 64 48 76 66 51 83 65 50 93 73 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 64 48 77 65 50 86 68 51 93 73 52 INFO: Distances between consecutive points are 10 10 9 INFO: Selected control points in test subject's space are 78 59 37 88 61 37 98 65 40 106 70 41 INFO: Distances between consecutive points in test subject's space are 10 11 9 WARN: Could not find satisfactory control point fit - try 73 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.146437 INFO: Points where local peaks in curvature occur are 74 68 51 (curv = 0.210016) 80 65 52 (curv = 0.319037) 83 66 50 (curv = 0.216028) 90 71 50 (curv = 0.193493) INFO: Intermediate dominant points are 66 66 54 74 68 51 80 65 52 93 74 53 INFO: Final dominant points are 66 66 54 74 68 51 80 65 52 93 74 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 66 54 75 68 51 85 68 50 93 74 53 INFO: Distances between consecutive points are 10 10 10 INFO: Selected control points in test subject's space are 77 63 42 86 64 38 97 65 38 106 71 42 INFO: Distances between consecutive points in test subject's space are 10 11 12 WARN: Could not find satisfactory control point fit - try 74 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.103466 INFO: Points where local peaks in curvature occur are 73 64 53 (curv = 0.263442) 81 64 50 (curv = 0.17578) 85 70 45 (curv = 0.20386) INFO: Intermediate dominant points are 66 63 53 73 64 53 85 70 45 94 80 47 INFO: Final dominant points are 66 63 53 73 64 53 85 70 45 94 80 47 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 63 53 77 63 51 85 70 45 94 80 47 INFO: Distances between consecutive points are 11 12 14 INFO: Selected control points in test subject's space are 77 60 42 88 59 39 97 66 33 108 77 34 INFO: Distances between consecutive points in test subject's space are 11 13 16 WARN: Could not find satisfactory control point fit - try 75 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.153619 INFO: Points where local peaks in curvature occur are 71 66 49 (curv = 0.324761) 77 65 55 (curv = 0.264657) 82 65 50 (curv = 0.16519) INFO: Intermediate dominant points are 65 66 50 77 65 55 82 65 50 87 71 50 INFO: Final dominant points are 65 66 50 77 65 55 82 65 50 87 71 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 66 50 73 65 53 82 65 51 87 71 50 INFO: Distances between consecutive points are 9 9 8 INFO: Selected control points in test subject's space are 76 62 39 83 61 41 94 62 39 100 68 38 INFO: Distances between consecutive points in test subject's space are 7 11 9 WARN: Could not find satisfactory control point fit - try 76 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.157954 INFO: Points where local peaks in curvature occur are 78 65 53 (curv = 0.404017) INFO: Intermediate dominant points are 67 63 49 78 65 53 83 66 50 91 71 50 INFO: Final dominant points are 67 63 49 78 65 53 86 69 50 91 71 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 63 49 74 68 51 81 66 51 91 71 50 INFO: Distances between consecutive points are 9 7 11 INFO: Selected control points in test subject's space are 78 59 38 85 64 38 93 63 39 104 68 39 INFO: Distances between consecutive points in test subject's space are 9 8 12 WARN: Could not find satisfactory control point fit - try 77 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.165856 INFO: Points where local peaks in curvature occur are 73 65 52 (curv = 0.22664) 78 62 55 (curv = 0.341501) 83 64 50 (curv = 0.205632) INFO: Intermediate dominant points are 65 63 51 78 62 55 83 64 50 88 71 54 INFO: Final dominant points are 65 63 51 78 62 55 83 64 50 88 71 54 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 63 51 74 64 53 81 63 51 88 71 54 INFO: Distances between consecutive points are 9 7 11 INFO: Selected control points in test subject's space are 76 59 40 85 60 41 92 60 40 100 69 43 INFO: Distances between consecutive points in test subject's space are 9 7 12 WARN: Could not find satisfactory control point fit - try 78 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.120723 INFO: Points where local peaks in curvature occur are 75 67 49 (curv = 0.244467) 80 64 50 (curv = 0.255651) 84 66 48 (curv = 0.166147) INFO: Intermediate dominant points are 66 65 47 80 64 50 86 69 49 96 73 52 INFO: Final dominant points are 66 65 47 80 64 50 91 72 50 96 73 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 65 47 77 65 50 86 69 49 96 73 52 INFO: Distances between consecutive points are 11 10 11 INFO: Selected control points in test subject's space are 77 60 36 88 61 37 98 66 37 110 70 41 INFO: Distances between consecutive points in test subject's space are 11 11 13 WARN: Could not find satisfactory control point fit - try 79 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.167974 INFO: Points where local peaks in curvature occur are 70 66 59 (curv = 0.350122) 83 66 49 (curv = 0.284167) INFO: Intermediate dominant points are 64 67 52 70 66 59 83 66 49 89 72 52 INFO: Final dominant points are 64 67 52 70 66 59 83 66 49 89 72 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 64 67 52 71 65 57 80 65 51 89 72 52 INFO: Distances between consecutive points are 9 11 11 INFO: Selected control points in test subject's space are 75 63 40 82 62 45 91 62 39 102 69 41 INFO: Distances between consecutive points in test subject's space are 9 11 13 WARN: Could not find satisfactory control point fit - try 80 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.165115 INFO: Points where local peaks in curvature occur are 71 67 48 (curv = 0.208695) 74 64 55 (curv = 0.393904) INFO: Intermediate dominant points are 65 63 48 71 67 48 74 64 55 87 72 52 INFO: Final dominant points are 65 63 48 71 67 48 74 64 55 87 72 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 63 48 72 67 50 79 64 53 87 72 52 INFO: Distances between consecutive points are 8 8 11 INFO: Selected control points in test subject's space are 76 59 37 82 62 37 90 61 41 100 69 40 INFO: Distances between consecutive points in test subject's space are 7 9 13 WARN: Could not find satisfactory control point fit - try 81 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.156708 INFO: Points where local peaks in curvature occur are 77 68 48 (curv = 0.252447) 82 65 51 (curv = 0.322952) 86 70 52 (curv = 0.177728) INFO: Intermediate dominant points are 69 63 53 77 68 48 82 65 51 94 75 52 INFO: Final dominant points are 69 63 53 77 68 48 82 65 51 94 75 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 63 53 77 68 48 84 68 51 94 75 52 INFO: Distances between consecutive points are 11 8 12 INFO: Selected control points in test subject's space are 80 60 41 88 64 35 96 65 39 108 72 41 INFO: Distances between consecutive points in test subject's space are 11 9 14 WARN: Could not find satisfactory control point fit - try 82 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.149043 INFO: Points where local peaks in curvature occur are 76 63 56 (curv = 0.534917) 83 66 50 (curv = 0.202003) INFO: Intermediate dominant points are 66 65 50 76 63 56 80 65 52 85 71 50 INFO: Final dominant points are 66 65 50 76 63 56 83 66 50 85 71 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 65 50 74 65 54 80 65 53 85 71 50 INFO: Distances between consecutive points are 9 6 8 INFO: Selected control points in test subject's space are 77 61 39 85 61 42 92 62 41 97 68 38 INFO: Distances between consecutive points in test subject's space are 9 7 8 WARN: Could not find satisfactory control point fit - try 83 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.153955 INFO: Points where local peaks in curvature occur are 75 65 56 (curv = 0.24491) 82 66 50 (curv = 0.241608) INFO: Intermediate dominant points are 69 64 49 75 65 56 82 66 50 86 71 50 INFO: Final dominant points are 69 64 49 75 65 56 82 66 50 86 71 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 64 49 74 66 55 81 65 51 86 71 50 INFO: Distances between consecutive points are 8 8 8 INFO: Selected control points in test subject's space are 80 59 37 85 62 43 92 62 39 98 68 38 INFO: Distances between consecutive points in test subject's space are 8 8 9 WARN: Could not find satisfactory control point fit - try 84 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.133289 INFO: Points where local peaks in curvature occur are 78 63 54 (curv = 0.305727) 84 66 49 (curv = 0.194658) 89 73 49 (curv = 0.178434) INFO: Intermediate dominant points are 70 62 50 78 63 54 84 66 49 94 76 52 INFO: Final dominant points are 70 62 50 78 63 54 84 66 49 94 76 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 70 62 50 79 63 54 86 68 49 94 76 52 INFO: Distances between consecutive points are 10 10 12 INFO: Selected control points in test subject's space are 81 58 39 90 60 43 98 65 37 108 73 40 INFO: Distances between consecutive points in test subject's space are 10 11 13 WARN: Could not find satisfactory control point fit - try 85 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.115453 INFO: Points where local peaks in curvature occur are 79 63 56 (curv = 0.175681) 83 65 49 (curv = 0.339235) INFO: Intermediate dominant points are 65 66 56 77 63 56 83 65 49 91 76 51 INFO: Final dominant points are 65 66 56 79 64 55 83 65 49 91 76 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 66 56 76 63 56 83 66 49 91 76 51 INFO: Distances between consecutive points are 11 10 13 INFO: Selected control points in test subject's space are 76 63 44 87 60 44 95 63 37 104 73 39 INFO: Distances between consecutive points in test subject's space are 11 11 14 WARN: Could not find satisfactory control point fit - try 86 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.113297 INFO: Points where local peaks in curvature occur are 76 66 49 (curv = 0.116242) 85 64 49 (curv = 0.25172) 89 70 49 (curv = 0.131541) INFO: Intermediate dominant points are 67 62 47 85 64 49 89 70 49 97 70 53 INFO: Final dominant points are 67 62 47 85 64 49 89 70 49 97 70 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 62 47 78 66 49 88 69 49 97 70 53 INFO: Distances between consecutive points are 12 10 10 INFO: Selected control points in test subject's space are 78 57 36 89 62 36 100 66 38 112 67 43 INFO: Distances between consecutive points in test subject's space are 12 12 13 WARN: Could not find satisfactory control point fit - try 87 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.110132 INFO: Points where local peaks in curvature occur are 75 65 50 (curv = 0.121042) 81 62 51 (curv = 0.187841) 92 71 49 (curv = 0.183859) INFO: Intermediate dominant points are 66 63 47 81 62 51 92 71 49 97 70 52 INFO: Final dominant points are 66 63 47 81 62 51 92 71 49 97 70 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 63 47 78 63 51 87 67 49 97 70 52 INFO: Distances between consecutive points are 13 10 11 INFO: Selected control points in test subject's space are 77 58 36 89 59 39 99 64 38 112 67 42 INFO: Distances between consecutive points in test subject's space are 12 11 14 WARN: Could not find satisfactory control point fit - try 88 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.114998 INFO: Points where local peaks in curvature occur are 82 66 51 (curv = 0.194969) 86 70 51 (curv = 0.134483) INFO: Intermediate dominant points are 68 68 55 78 65 54 82 66 51 92 73 52 INFO: Final dominant points are 68 68 55 78 65 55 82 66 51 92 73 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 68 55 78 65 55 85 69 51 92 73 52 INFO: Distances between consecutive points are 10 9 8 INFO: Selected control points in test subject's space are 78 65 42 89 62 43 97 66 39 105 70 41 INFO: Distances between consecutive points in test subject's space are 11 10 9 WARN: Could not find satisfactory control point fit - try 89 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.113091 INFO: Points where local peaks in curvature occur are 83 65 50 (curv = 0.290357) INFO: Intermediate dominant points are 66 65 48 78 66 50 83 65 50 93 71 53 INFO: Final dominant points are 66 65 48 78 66 50 83 65 50 93 71 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 65 48 77 66 50 85 68 51 93 71 53 INFO: Distances between consecutive points are 11 8 9 INFO: Selected control points in test subject's space are 77 60 37 88 62 37 97 65 40 106 68 42 INFO: Distances between consecutive points in test subject's space are 11 10 10 WARN: Could not find satisfactory control point fit - try 90 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.121675 INFO: Points where local peaks in curvature occur are 73 66 50 (curv = 0.171434) 76 68 49 (curv = 0.280039) 78 67 50 (curv = 0.148043) 83 65 48 (curv = 0.246816) INFO: Intermediate dominant points are 67 64 48 76 68 49 83 65 48 96 75 50 INFO: Final dominant points are 67 64 48 76 68 49 83 65 48 96 75 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 64 48 77 68 49 87 69 48 96 75 50 INFO: Distances between consecutive points are 11 10 11 INFO: Selected control points in test subject's space are 78 59 37 88 64 36 99 66 36 110 72 38 INFO: Distances between consecutive points in test subject's space are 11 11 13 WARN: Could not find satisfactory control point fit - try 91 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.143403 INFO: Points where local peaks in curvature occur are 74 66 51 (curv = 0.349906) 81 63 49 (curv = 0.322021) INFO: Intermediate dominant points are 66 63 50 74 66 51 81 63 49 91 74 49 INFO: Final dominant points are 66 63 50 74 66 51 81 63 49 91 74 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 63 50 74 66 51 83 66 47 91 74 49 INFO: Distances between consecutive points are 9 10 11 INFO: Selected control points in test subject's space are 77 59 39 84 62 38 94 62 35 104 71 37 INFO: Distances between consecutive points in test subject's space are 8 10 14 WARN: Could not find satisfactory control point fit - try 92 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.131761 INFO: Points where local peaks in curvature occur are 75 63 51 (curv = 0.194019) 79 65 47 (curv = 0.237267) 82 64 48 (curv = 0.336881) 86 68 46 (curv = 0.14118) INFO: Intermediate dominant points are 66 67 51 75 63 51 82 64 48 92 79 47 INFO: Final dominant points are 66 67 51 75 63 51 82 64 48 92 79 47 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 67 51 76 64 49 85 68 46 92 79 47 INFO: Distances between consecutive points are 11 10 13 INFO: Selected control points in test subject's space are 76 63 39 87 59 36 97 64 34 106 76 34 INFO: Distances between consecutive points in test subject's space are 12 11 15 WARN: Could not find satisfactory control point fit - try 93 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.104965 INFO: Points where local peaks in curvature occur are 74 63 52 (curv = 0.110281) 79 63 52 (curv = 0.224747) 83 66 50 (curv = 0.226321) INFO: Intermediate dominant points are 66 66 56 74 63 52 83 66 50 90 75 51 INFO: Final dominant points are 66 66 56 74 63 52 83 66 50 90 75 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 66 56 74 63 52 82 66 50 90 75 51 INFO: Distances between consecutive points are 9 9 12 INFO: Selected control points in test subject's space are 77 63 44 85 59 40 94 63 38 103 72 39 INFO: Distances between consecutive points in test subject's space are 10 10 13 WARN: Could not find satisfactory control point fit - try 94 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.220973 INFO: Points where local peaks in curvature occur are 77 62 56 (curv = 0.401827) 81 61 53 (curv = 0.344918) 82 66 50 (curv = 0.339485) INFO: Intermediate dominant points are 68 64 51 77 62 56 82 66 50 85 72 53 INFO: Final dominant points are 68 64 51 77 62 56 82 66 50 85 72 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 64 51 77 63 55 81 64 52 85 72 53 INFO: Distances between consecutive points are 10 5 9 INFO: Selected control points in test subject's space are 79 60 39 88 60 43 92 61 41 97 69 41 INFO: Distances between consecutive points in test subject's space are 10 5 9 WARN: Could not find satisfactory control point fit - try 95 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.111232 INFO: Points where local peaks in curvature occur are 71 66 55 (curv = 0.144318) 76 65 55 (curv = 0.119853) 79 64 52 (curv = 0.123137) 84 67 48 (curv = 0.186248) INFO: Intermediate dominant points are 64 70 52 71 66 55 79 64 52 86 71 49 INFO: Final dominant points are 64 70 52 71 66 55 79 64 52 86 71 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 64 70 52 73 66 55 80 65 51 86 71 49 INFO: Distances between consecutive points are 10 8 9 INFO: Selected control points in test subject's space are 74 66 39 84 62 43 91 62 39 98 68 37 INFO: Distances between consecutive points in test subject's space are 11 8 9 WARN: Could not find satisfactory control point fit - try 96 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.151484 INFO: Points where local peaks in curvature occur are 72 66 55 (curv = 0.296541) 75 62 58 (curv = 0.590931) 79 64 53 (curv = 0.152156) INFO: Intermediate dominant points are 64 68 52 75 62 58 82 67 53 96 74 51 INFO: Final dominant points are 64 68 52 75 62 58 90 69 51 96 74 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 64 68 52 72 65 55 82 66 53 96 74 51 INFO: Distances between consecutive points are 9 10 16 INFO: Selected control points in test subject's space are 75 64 40 83 62 43 94 63 41 110 71 40 INFO: Distances between consecutive points in test subject's space are 9 11 18 WARN: Could not find satisfactory control point fit - try 97 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0933019 INFO: Points where local peaks in curvature occur are 83 65 49 (curv = 0.281462) 87 70 51 (curv = 0.110407) INFO: Intermediate dominant points are 66 64 47 77 66 50 83 65 49 95 71 53 INFO: Final dominant points are 66 64 47 78 66 49 83 65 49 95 71 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 64 47 77 66 50 86 69 50 95 71 53 INFO: Distances between consecutive points are 12 9 10 INFO: Selected control points in test subject's space are 77 59 36 88 62 37 98 66 38 109 68 42 INFO: Distances between consecutive points in test subject's space are 11 11 12 WARN: Could not find satisfactory control point fit - try 98 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0746255 INFO: Points where local peaks in curvature occur are 84 66 49 (curv = 0.120154) 86 69 49 (curv = 0.145704) INFO: Intermediate dominant points are 67 62 47 78 65 49 86 69 49 94 80 45 INFO: Final dominant points are 67 62 47 80 66 49 86 69 49 94 80 45 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 62 47 78 66 49 87 70 48 94 80 45 INFO: Distances between consecutive points are 12 10 13 INFO: Selected control points in test subject's space are 78 57 36 89 62 36 99 67 36 108 77 32 INFO: Distances between consecutive points in test subject's space are 12 11 14 WARN: Could not find satisfactory control point fit - try 99 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.127375 INFO: Points where local peaks in curvature occur are 73 65 58 (curv = 0.458908) 79 64 56 (curv = 0.134837) INFO: Intermediate dominant points are 68 66 51 73 65 58 79 64 56 96 75 50 INFO: Final dominant points are 68 66 51 73 65 58 79 64 56 96 75 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 66 51 75 65 59 86 66 53 96 75 50 INFO: Distances between consecutive points are 11 13 14 INFO: Selected control points in test subject's space are 78 62 39 86 62 47 98 64 42 110 72 38 INFO: Distances between consecutive points in test subject's space are 11 13 15 WARN: Could not find satisfactory control point fit - try 100 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.182862 INFO: Points where local peaks in curvature occur are 79 71 48 (curv = 0.469876) 83 66 49 (curv = 0.449702) 91 74 50 (curv = 0.194402) INFO: Intermediate dominant points are 68 68 55 79 71 48 87 70 53 93 83 46 INFO: Final dominant points are 68 68 55 79 71 48 91 74 50 93 83 46 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 68 55 78 71 47 86 69 53 93 83 46 INFO: Distances between consecutive points are 13 10 17 INFO: Selected control points in test subject's space are 78 65 42 90 68 34 98 66 42 107 80 33 INFO: Distances between consecutive points in test subject's space are 15 11 19 WARN: Could not find satisfactory control point fit - try 101 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.107196 INFO: Points where local peaks in curvature occur are 79 62 55 (curv = 0.198311) 84 65 49 (curv = 0.114079) INFO: Intermediate dominant points are 69 64 54 79 62 55 84 65 49 91 78 47 INFO: Final dominant points are 69 64 54 79 62 55 84 65 49 91 78 47 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 64 54 81 62 53 86 70 45 91 78 47 INFO: Distances between consecutive points are 12 12 10 INFO: Selected control points in test subject's space are 80 61 42 92 59 42 98 66 33 104 75 35 INFO: Distances between consecutive points in test subject's space are 12 13 11 WARN: Could not find satisfactory control point fit - try 102 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0891423 INFO: Points where local peaks in curvature occur are 73 65 50 (curv = 0.122726) 79 67 47 (curv = 0.141188) 83 66 47 (curv = 0.244056) 89 73 47 (curv = 0.0951941) INFO: Intermediate dominant points are 67 65 48 83 66 47 89 73 47 94 80 47 INFO: Final dominant points are 67 65 48 83 66 47 89 73 47 94 80 47 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 65 48 78 67 48 87 70 47 94 80 47 INFO: Distances between consecutive points are 11 10 12 INFO: Selected control points in test subject's space are 78 60 37 89 63 35 99 67 35 108 77 34 INFO: Distances between consecutive points in test subject's space are 12 11 13 WARN: Could not find satisfactory control point fit - try 103 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.184793 INFO: Points where local peaks in curvature occur are 69 68 47 (curv = 0.286929) 78 64 53 (curv = 0.388129) INFO: Intermediate dominant points are 65 67 52 69 68 47 78 64 53 87 70 50 INFO: Final dominant points are 65 67 52 69 68 47 78 64 53 87 70 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 67 52 71 68 48 79 64 53 87 70 50 INFO: Distances between consecutive points are 7 10 10 INFO: Selected control points in test subject's space are 76 63 40 81 63 35 90 61 41 99 67 39 INFO: Distances between consecutive points in test subject's space are 7 11 11 WARN: Could not find satisfactory control point fit - try 104 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.141632 INFO: Points where local peaks in curvature occur are 75 65 57 (curv = 0.215242) 78 62 56 (curv = 0.274881) INFO: Intermediate dominant points are 66 65 53 75 65 57 78 62 56 86 70 50 INFO: Final dominant points are 66 65 53 75 65 57 78 62 56 86 70 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 65 53 74 65 57 82 62 53 86 70 50 INFO: Distances between consecutive points are 9 9 9 INFO: Selected control points in test subject's space are 77 62 41 85 62 45 93 59 42 98 67 38 INFO: Distances between consecutive points in test subject's space are 9 9 10 WARN: Could not find satisfactory control point fit - try 105 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.154387 INFO: Points where local peaks in curvature occur are 78 65 54 (curv = 0.192542) 82 66 51 (curv = 0.387946) INFO: Intermediate dominant points are 67 66 49 73 66 52 82 66 51 86 72 53 INFO: Final dominant points are 67 66 49 78 65 54 82 66 51 86 72 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 66 49 73 66 52 81 66 52 86 72 53 INFO: Distances between consecutive points are 7 8 8 INFO: Selected control points in test subject's space are 77 61 37 83 62 39 93 63 40 98 69 41 INFO: Distances between consecutive points in test subject's space are 6 10 8 WARN: Could not find satisfactory control point fit - try 106 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.103404 INFO: Points where local peaks in curvature occur are 77 68 48 (curv = 0.138401) 84 66 47 (curv = 0.303103) 86 70 47 (curv = 0.108382) INFO: Intermediate dominant points are 67 65 49 84 66 47 88 71 47 95 74 52 INFO: Final dominant points are 67 65 49 84 66 47 91 73 49 95 74 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 65 49 78 68 48 87 70 47 95 74 52 INFO: Distances between consecutive points are 11 9 10 INFO: Selected control points in test subject's space are 78 60 38 90 64 35 99 67 35 109 71 41 INFO: Distances between consecutive points in test subject's space are 13 9 12 WARN: Could not find satisfactory control point fit - try 107 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.248353 INFO: Points where local peaks in curvature occur are 78 71 46 (curv = 0.496385) 81 66 49 (curv = 0.524629) 88 75 47 (curv = 0.792498) INFO: Intermediate dominant points are 66 66 48 81 66 49 88 75 47 86 70 53 INFO: Final dominant points are 66 66 48 81 66 49 88 75 47 86 70 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 66 48 79 71 46 86 71 47 86 70 53 INFO: Distances between consecutive points are 14 7 6 INFO: Selected control points in test subject's space are 77 61 37 91 67 33 98 68 35 98 67 42 INFO: Distances between consecutive points in test subject's space are 16 7 7 WARN: Could not find satisfactory control point fit - try 108 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 5 INFO: Minimum allowable curvature at a dominant point is 0.119249 INFO: Points where local peaks in curvature occur are 72 67 55 (curv = 0.224107) 84 67 52 (curv = 0.153067) INFO: Intermediate dominant points are 66 66 51 72 67 55 84 67 52 88 70 54 INFO: Final dominant points are 66 66 51 72 67 55 84 67 52 88 70 54 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 66 51 73 67 55 81 66 53 88 70 54 INFO: Distances between consecutive points are 8 8 8 INFO: Selected control points in test subject's space are 77 62 39 84 63 42 93 63 41 100 68 43 INFO: Distances between consecutive points in test subject's space are 8 9 9 WARN: Could not find satisfactory control point fit - try 109 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.146547 INFO: Points where local peaks in curvature occur are 71 68 58 (curv = 0.189012) 78 63 58 (curv = 0.392204) INFO: Intermediate dominant points are 67 67 53 78 63 58 81 65 55 89 72 52 INFO: Final dominant points are 67 67 53 78 63 58 84 67 53 89 72 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 67 53 74 65 58 80 65 54 89 72 52 INFO: Distances between consecutive points are 9 7 12 INFO: Selected control points in test subject's space are 77 63 41 85 62 46 92 62 42 102 69 41 INFO: Distances between consecutive points in test subject's space are 9 8 12 WARN: Could not find satisfactory control point fit - try 110 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.0966745 INFO: Points where local peaks in curvature occur are 82 65 52 (curv = 0.21872) INFO: Intermediate dominant points are 66 66 49 74 66 50 82 65 52 86 72 53 INFO: Final dominant points are 66 66 49 77 66 51 82 65 52 86 72 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 66 49 73 66 50 81 65 52 86 72 53 INFO: Distances between consecutive points are 7 8 9 INFO: Selected control points in test subject's space are 77 62 38 83 61 37 93 62 40 98 69 41 INFO: Distances between consecutive points in test subject's space are 6 10 9 WARN: Could not find satisfactory control point fit - try 111 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.129137 INFO: Points where local peaks in curvature occur are 69 68 52 (curv = 0.203896) 77 65 54 (curv = 0.164645) INFO: Intermediate dominant points are 65 67 49 69 68 52 77 65 54 85 71 53 INFO: Final dominant points are 65 67 49 69 68 52 77 65 54 85 71 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 67 49 70 68 53 78 64 53 85 71 53 INFO: Distances between consecutive points are 6 9 10 INFO: Selected control points in test subject's space are 76 63 38 80 64 40 89 61 41 97 68 41 INFO: Distances between consecutive points in test subject's space are 5 10 11 WARN: Could not find satisfactory control point fit - try 112 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.140744 INFO: Points where local peaks in curvature occur are 72 67 50 (curv = 0.24339) 77 66 54 (curv = 0.186236) 80 65 53 (curv = 0.229623) INFO: Intermediate dominant points are 63 69 52 72 67 50 80 65 53 87 70 53 INFO: Final dominant points are 63 69 52 72 67 50 80 65 53 87 70 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 63 69 52 72 67 51 80 65 54 87 70 53 INFO: Distances between consecutive points are 9 9 9 INFO: Selected control points in test subject's space are 74 65 40 82 62 38 92 62 42 99 67 42 INFO: Distances between consecutive points in test subject's space are 9 11 9 WARN: Could not find satisfactory control point fit - try 113 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.0970552 INFO: Points where local peaks in curvature occur are 75 64 57 (curv = 0.209429) INFO: Intermediate dominant points are 65 65 52 75 64 57 79 66 53 84 68 47 INFO: Final dominant points are 65 65 52 75 64 57 81 66 50 84 68 47 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 65 52 72 65 57 79 65 54 84 68 47 INFO: Distances between consecutive points are 9 8 9 INFO: Selected control points in test subject's space are 76 61 40 83 62 45 91 62 42 96 64 35 INFO: Distances between consecutive points in test subject's space are 9 9 9 WARN: Could not find satisfactory control point fit - try 114 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.134379 INFO: Points where local peaks in curvature occur are 77 61 57 (curv = 0.46803) 84 60 52 (curv = 0.139586) INFO: Intermediate dominant points are 66 67 56 77 61 57 90 63 52 95 73 51 INFO: Final dominant points are 66 67 56 77 61 57 95 66 53 95 73 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 67 56 76 61 56 89 62 52 95 73 51 INFO: Distances between consecutive points are 12 14 13 INFO: Selected control points in test subject's space are 77 64 43 87 58 45 100 60 43 109 70 40 INFO: Distances between consecutive points in test subject's space are 12 13 14 WARN: Could not find satisfactory control point fit - try 115 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.129273 INFO: Points where local peaks in curvature occur are 76 61 57 (curv = 0.248445) 79 60 56 (curv = 0.223502) 84 62 51 (curv = 0.22202) INFO: Intermediate dominant points are 67 66 52 76 61 57 85 62 52 95 69 54 INFO: Final dominant points are 67 66 52 76 61 57 90 65 53 95 69 54 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 66 52 76 61 57 85 62 52 95 69 54 INFO: Distances between consecutive points are 11 10 12 INFO: Selected control points in test subject's space are 78 62 40 87 58 46 96 59 42 109 66 44 INFO: Distances between consecutive points in test subject's space are 12 10 15 WARN: Could not find satisfactory control point fit - try 116 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.172926 INFO: Points where local peaks in curvature occur are 74 66 52 (curv = 0.35303) 78 61 56 (curv = 0.40402) 84 61 53 (curv = 0.215684) INFO: Intermediate dominant points are 68 64 51 78 61 56 84 61 53 91 65 55 INFO: Final dominant points are 68 64 51 78 61 56 84 61 53 91 65 55 WARN: Defaulting to equidistant control points INFO: Selected control points are 68 64 51 76 64 54 83 61 52 91 65 55 INFO: Distances between consecutive points are 9 8 9 INFO: Selected control points in test subject's space are 79 60 39 87 60 42 94 58 42 103 63 45 INFO: Distances between consecutive points in test subject's space are 9 7 11 WARN: Could not find satisfactory control point fit - try 117 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.16222 INFO: Points where local peaks in curvature occur are 78 61 56 (curv = 0.324163) 84 61 52 (curv = 0.279287) INFO: Intermediate dominant points are 69 65 53 78 61 56 84 61 52 90 65 54 INFO: Final dominant points are 69 65 53 78 61 56 84 61 52 90 65 54 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 65 53 77 62 56 84 61 52 90 65 54 INFO: Distances between consecutive points are 9 8 7 INFO: Selected control points in test subject's space are 80 61 41 88 59 45 95 58 42 102 63 44 INFO: Distances between consecutive points in test subject's space are 9 8 9 WARN: Could not find satisfactory control point fit - try 118 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.10754 INFO: Points where local peaks in curvature occur are 75 63 54 (curv = 0.178403) 78 60 55 (curv = 0.248455) INFO: Intermediate dominant points are 67 65 55 78 60 55 87 64 52 95 69 55 INFO: Final dominant points are 67 65 55 78 60 55 91 66 53 95 69 55 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 65 55 76 61 55 86 63 52 95 69 55 INFO: Distances between consecutive points are 10 11 11 INFO: Selected control points in test subject's space are 78 62 43 87 58 44 97 60 42 109 66 45 INFO: Distances between consecutive points in test subject's space are 10 10 14 WARN: Could not find satisfactory control point fit - try 119 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.130611 INFO: Points where local peaks in curvature occur are 71 64 58 (curv = 0.216514) 78 62 57 (curv = 0.200713) 84 63 52 (curv = 0.216386) INFO: Intermediate dominant points are 65 66 53 71 64 58 84 63 52 91 65 54 INFO: Final dominant points are 65 66 53 71 64 58 84 63 52 91 65 54 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 66 53 74 64 57 82 62 53 91 65 54 INFO: Distances between consecutive points are 10 9 10 INFO: Selected control points in test subject's space are 76 62 41 85 61 45 93 59 42 103 63 44 INFO: Distances between consecutive points in test subject's space are 10 9 11 WARN: Could not find satisfactory control point fit - try 120 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 6 INFO: Minimum allowable curvature at a dominant point is 0.148732 INFO: Points where local peaks in curvature occur are 77 65 56 (curv = 0.245143) 79 70 50 (curv = 0.261764) INFO: Intermediate dominant points are 67 65 56 77 65 56 79 70 50 84 68 47 INFO: Final dominant points are 67 65 56 77 65 56 79 70 50 84 68 47 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 65 56 76 65 57 79 69 51 84 68 47 INFO: Distances between consecutive points are 9 8 6 INFO: Selected control points in test subject's space are 78 62 44 87 62 45 91 66 38 96 64 35 INFO: Distances between consecutive points in test subject's space are 9 9 6 WARN: Could not find satisfactory control point fit - try 121 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.124947 INFO: Points where local peaks in curvature occur are 75 66 51 (curv = 0.147586) 80 63 52 (curv = 0.242606) 84 66 49 (curv = 0.150003) INFO: Intermediate dominant points are 65 64 48 80 63 52 86 67 49 96 74 51 INFO: Final dominant points are 65 64 48 80 63 52 90 72 49 96 74 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 64 48 77 65 53 86 67 49 96 74 51 INFO: Distances between consecutive points are 13 10 12 INFO: Selected control points in test subject's space are 76 60 37 88 61 41 98 64 38 110 71 40 INFO: Distances between consecutive points in test subject's space are 13 11 14 WARN: Could not find satisfactory control point fit - try 122 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.136611 INFO: Points where local peaks in curvature occur are 76 65 56 (curv = 0.248658) 85 68 49 (curv = 0.166641) INFO: Intermediate dominant points are 69 64 49 76 65 56 85 68 49 88 75 51 INFO: Final dominant points are 69 64 49 76 65 56 85 68 49 88 75 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 64 49 74 65 55 82 65 50 88 75 51 INFO: Distances between consecutive points are 8 9 12 INFO: Selected control points in test subject's space are 80 59 37 85 62 43 93 62 38 101 72 39 INFO: Distances between consecutive points in test subject's space are 8 9 13 WARN: Could not find satisfactory control point fit - try 123 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.14685 INFO: Points where local peaks in curvature occur are 75 63 59 (curv = 0.338913) 82 66 52 (curv = 0.156763) 89 74 53 (curv = 0.225486) INFO: Intermediate dominant points are 65 63 52 75 63 59 89 74 53 91 80 48 INFO: Final dominant points are 65 63 52 75 63 59 89 74 53 91 80 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 65 63 52 75 63 59 86 70 52 91 80 48 INFO: Distances between consecutive points are 12 15 12 INFO: Selected control points in test subject's space are 76 59 41 86 60 48 98 67 41 104 77 35 INFO: Distances between consecutive points in test subject's space are 12 16 13 WARN: Could not find satisfactory control point fit - try 124 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_cpts_4.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.ar_avg16_syn_bbr_cpts_4.nii.gz Done in 2.153 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/rh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/rh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/rh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/rh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/rh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/rh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/rh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/rh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/rh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/rh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/rh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/rh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/rh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/rh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/rh.ar.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/rh.ar.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 399 total streamlines (min/mean/max length: 33/50/77) Processing pathway 14 of 42... INFO: Have 356 non-truncated streamlines (min/mean/max length: 33/50/74) Computing path histograms INFO: Total streamline volume is 2418 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 13 segments Computing prior on underlying anatomy (all streamlines) Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0888298 INFO: Points where local peaks in curvature occur are 40 64 55 (curv = 0.210545) 35 67 50 (curv = 0.106674) 32 69 49 (curv = 0.11863) INFO: Intermediate dominant points are 52 67 53 40 64 55 31 70 49 24 81 50 INFO: Final dominant points are 52 67 53 40 64 55 26 75 50 24 81 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 52 67 53 41 64 55 32 70 49 24 81 50 INFO: Distances between consecutive points are 12 12 14 INFO: Selected control points in test subject's space are 64 64 41 52 62 42 42 68 36 32 80 35 INFO: Distances between consecutive points in test subject's space are 12 13 16 WARN: Could not find satisfactory control point fit - try 1 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.128217 INFO: Points where local peaks in curvature occur are 42 64 56 (curv = 0.212685) 31 68 51 (curv = 0.234517) 31 73 49 (curv = 0.243564) INFO: Intermediate dominant points are 52 65 51 42 64 56 31 73 49 24 76 48 INFO: Final dominant points are 52 65 51 42 64 56 31 73 49 24 76 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 52 65 51 40 64 56 31 68 51 24 76 48 INFO: Distances between consecutive points are 13 11 11 INFO: Selected control points in test subject's space are 64 61 39 51 62 44 41 67 38 32 75 34 INFO: Distances between consecutive points in test subject's space are 14 13 13 WARN: Could not find satisfactory control point fit - try 2 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.101596 INFO: Points where local peaks in curvature occur are 47 64 54 (curv = 0.201214) 39 64 55 (curv = 0.310458) 35 66 50 (curv = 0.114309) INFO: Intermediate dominant points are 52 66 55 39 64 55 30 70 50 24 81 49 INFO: Final dominant points are 52 66 55 39 64 55 27 77 50 24 81 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 52 66 55 40 64 55 30 70 50 24 81 49 INFO: Distances between consecutive points are 12 13 13 INFO: Selected control points in test subject's space are 64 63 42 51 62 43 40 69 37 32 80 34 INFO: Distances between consecutive points in test subject's space are 13 14 14 WARN: Could not find satisfactory control point fit - try 3 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.102005 INFO: Points where local peaks in curvature occur are 41 65 55 (curv = 0.169903) 37 66 52 (curv = 0.198702) INFO: Intermediate dominant points are 50 66 51 37 66 52 33 69 49 27 80 47 INFO: Final dominant points are 50 66 51 37 66 52 29 74 49 27 80 47 WARN: Defaulting to equidistant control points INFO: Selected control points are 50 66 51 41 66 54 33 69 50 27 80 47 INFO: Distances between consecutive points are 9 9 13 INFO: Selected control points in test subject's space are 62 62 39 52 63 41 43 67 37 36 78 32 INFO: Distances between consecutive points in test subject's space are 10 11 14 WARN: Could not find satisfactory control point fit - try 4 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.107688 INFO: Points where local peaks in curvature occur are 38 63 53 (curv = 0.200968) 35 66 50 (curv = 0.178879) 28 75 51 (curv = 0.28938) INFO: Intermediate dominant points are 51 65 55 38 63 53 28 75 51 25 81 47 INFO: Final dominant points are 51 65 55 38 63 53 28 75 51 25 81 47 WARN: Defaulting to equidistant control points INFO: Selected control points are 51 65 55 39 63 53 30 72 50 25 81 47 INFO: Distances between consecutive points are 12 13 11 INFO: Selected control points in test subject's space are 63 62 43 50 61 41 39 70 37 34 80 32 INFO: Distances between consecutive points in test subject's space are 13 15 12 WARN: Could not find satisfactory control point fit - try 5 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0777136 INFO: Points where local peaks in curvature occur are 38 64 54 (curv = 0.19358) INFO: Intermediate dominant points are 50 65 50 38 64 54 30 71 50 24 79 50 INFO: Final dominant points are 50 65 50 38 64 54 27 75 50 24 79 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 50 65 50 40 64 54 31 70 50 24 79 50 INFO: Distances between consecutive points are 11 12 11 INFO: Selected control points in test subject's space are 62 61 38 51 62 41 41 68 37 32 78 35 INFO: Distances between consecutive points in test subject's space are 11 12 14 WARN: Could not find satisfactory control point fit - try 6 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.124293 INFO: Points where local peaks in curvature occur are 44 66 53 (curv = 0.125323) 41 64 55 (curv = 0.375506) 38 64 53 (curv = 0.165955) INFO: Intermediate dominant points are 50 65 51 41 64 55 34 68 50 23 76 49 INFO: Final dominant points are 50 65 51 41 64 55 29 72 49 23 76 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 50 65 51 41 64 55 34 68 50 23 76 49 INFO: Distances between consecutive points are 10 9 14 INFO: Selected control points in test subject's space are 62 61 39 52 62 42 44 66 37 31 75 35 INFO: Distances between consecutive points in test subject's space are 10 10 16 WARN: Could not find satisfactory control point fit - try 7 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.124402 INFO: Points where local peaks in curvature occur are 45 66 53 (curv = 0.161361) 40 63 57 (curv = 0.378606) INFO: Intermediate dominant points are 52 67 52 40 63 57 34 68 51 24 77 51 INFO: Final dominant points are 52 67 52 40 63 57 30 73 51 24 77 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 52 67 52 43 64 57 34 67 52 24 77 51 INFO: Distances between consecutive points are 11 11 14 INFO: Selected control points in test subject's space are 64 63 40 54 62 45 44 66 39 32 76 37 INFO: Distances between consecutive points in test subject's space are 11 12 16 WARN: Could not find satisfactory control point fit - try 8 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0992838 INFO: Points where local peaks in curvature occur are 41 64 56 (curv = 0.206915) 36 65 52 (curv = 0.130337) INFO: Intermediate dominant points are 51 65 52 41 64 56 36 65 52 24 77 50 INFO: Final dominant points are 51 65 52 41 64 56 36 65 52 24 77 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 51 65 52 40 64 55 32 69 51 24 77 50 INFO: Distances between consecutive points are 11 10 11 INFO: Selected control points in test subject's space are 63 62 40 51 62 43 42 68 38 32 76 36 INFO: Distances between consecutive points in test subject's space are 12 12 13 WARN: Could not find satisfactory control point fit - try 9 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.105543 INFO: Points where local peaks in curvature occur are 41 64 56 (curv = 0.259218) 35 66 51 (curv = 0.183686) INFO: Intermediate dominant points are 50 66 52 41 64 56 35 66 51 25 75 48 INFO: Final dominant points are 50 66 52 41 64 56 35 66 51 25 75 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 50 66 52 41 65 56 34 68 50 25 75 48 INFO: Distances between consecutive points are 10 10 12 INFO: Selected control points in test subject's space are 62 62 40 52 63 43 44 66 37 34 73 34 INFO: Distances between consecutive points in test subject's space are 10 10 13 WARN: Could not find satisfactory control point fit - try 10 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.10786 INFO: Points where local peaks in curvature occur are 41 64 55 (curv = 0.441654) 37 67 50 (curv = 0.111739) INFO: Intermediate dominant points are 50 65 50 41 64 55 37 67 50 24 79 49 INFO: Final dominant points are 50 65 50 41 64 55 37 67 50 24 79 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 50 65 50 40 64 53 30 71 49 24 79 49 INFO: Distances between consecutive points are 10 13 10 INFO: Selected control points in test subject's space are 62 61 38 51 61 40 39 69 36 32 78 34 INFO: Distances between consecutive points in test subject's space are 11 15 12 WARN: Could not find satisfactory control point fit - try 11 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0927997 INFO: Points where local peaks in curvature occur are 43 63 55 (curv = 0.341462) INFO: Intermediate dominant points are 51 66 53 43 63 55 33 69 49 25 78 47 INFO: Final dominant points are 51 66 53 43 63 55 30 73 49 25 78 47 WARN: Defaulting to equidistant control points INFO: Selected control points are 51 66 53 42 63 54 33 69 49 25 78 47 INFO: Distances between consecutive points are 10 12 12 INFO: Selected control points in test subject's space are 63 63 41 54 60 42 43 67 36 34 76 32 INFO: Distances between consecutive points in test subject's space are 10 14 13 WARN: Could not find satisfactory control point fit - try 12 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.102876 INFO: Points where local peaks in curvature occur are 42 64 54 (curv = 0.162888) 38 64 52 (curv = 0.225995) INFO: Intermediate dominant points are 52 65 52 38 64 52 33 68 50 24 75 53 INFO: Final dominant points are 52 65 52 38 64 52 28 72 50 24 75 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 52 65 52 42 64 54 33 68 50 24 75 53 INFO: Distances between consecutive points are 10 11 12 INFO: Selected control points in test subject's space are 64 62 40 54 61 41 43 66 37 32 74 39 INFO: Distances between consecutive points in test subject's space are 10 13 14 WARN: Could not find satisfactory control point fit - try 13 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0852672 INFO: Points where local peaks in curvature occur are 35 67 51 (curv = 0.128562) 30 70 50 (curv = 0.114739) 27 72 51 (curv = 0.213143) INFO: Intermediate dominant points are 51 65 52 35 67 51 27 72 51 24 76 50 INFO: Final dominant points are 51 65 52 35 67 51 27 72 51 24 76 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 51 65 52 40 66 53 31 70 50 24 76 50 INFO: Distances between consecutive points are 11 10 9 INFO: Selected control points in test subject's space are 63 62 40 51 64 40 41 68 37 32 75 36 INFO: Distances between consecutive points in test subject's space are 12 11 11 WARN: Could not find satisfactory control point fit - try 14 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.104149 INFO: Points where local peaks in curvature occur are 41 63 56 (curv = 0.280645) INFO: Intermediate dominant points are 51 65 52 41 63 56 32 67 51 25 75 49 INFO: Final dominant points are 51 65 52 41 63 56 29 70 50 25 75 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 51 65 52 42 63 55 34 66 51 25 75 49 INFO: Distances between consecutive points are 10 9 13 INFO: Selected control points in test subject's space are 63 62 40 53 60 43 44 64 39 33 74 35 INFO: Distances between consecutive points in test subject's space are 11 11 15 WARN: Could not find satisfactory control point fit - try 15 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0766978 INFO: Points where local peaks in curvature occur are 39 64 53 (curv = 0.139471) 32 69 51 (curv = 0.107488) INFO: Intermediate dominant points are 51 65 53 39 64 53 32 69 51 25 75 51 INFO: Final dominant points are 51 65 53 39 64 53 32 69 51 25 75 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 51 65 53 41 64 54 33 68 51 25 75 51 INFO: Distances between consecutive points are 10 9 11 INFO: Selected control points in test subject's space are 63 62 41 52 61 41 43 66 38 33 74 37 INFO: Distances between consecutive points in test subject's space are 11 11 13 WARN: Could not find satisfactory control point fit - try 16 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.111428 INFO: Points where local peaks in curvature occur are 46 64 55 (curv = 0.33696) 37 67 49 (curv = 0.147945) 33 70 47 (curv = 0.182338) INFO: Intermediate dominant points are 51 66 50 46 64 55 33 70 47 25 81 50 INFO: Final dominant points are 51 66 50 46 64 55 33 70 47 25 81 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 51 66 50 41 66 53 32 71 48 25 81 50 INFO: Distances between consecutive points are 10 11 12 INFO: Selected control points in test subject's space are 63 62 38 52 63 40 42 69 35 34 80 35 INFO: Distances between consecutive points in test subject's space are 11 13 14 WARN: Could not find satisfactory control point fit - try 17 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.114575 INFO: Points where local peaks in curvature occur are 46 66 55 (curv = 0.132533) 40 64 55 (curv = 0.191558) 29 70 50 (curv = 0.270932) INFO: Intermediate dominant points are 51 67 52 40 64 55 29 70 50 24 74 53 INFO: Final dominant points are 51 67 52 40 64 55 29 70 50 24 74 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 51 67 52 41 65 55 32 68 52 24 74 53 INFO: Distances between consecutive points are 11 10 10 INFO: Selected control points in test subject's space are 63 63 40 52 63 42 42 67 39 32 73 40 INFO: Distances between consecutive points in test subject's space are 11 11 12 WARN: Could not find satisfactory control point fit - try 18 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0860836 INFO: Points where local peaks in curvature occur are 38 63 54 (curv = 0.19048) INFO: Intermediate dominant points are 51 66 53 38 63 54 31 67 52 24 76 48 INFO: Final dominant points are 51 66 53 38 63 54 27 70 51 24 76 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 51 66 53 41 64 55 32 67 52 24 76 48 INFO: Distances between consecutive points are 10 10 13 INFO: Selected control points in test subject's space are 63 63 41 52 62 42 42 66 40 32 75 34 INFO: Distances between consecutive points in test subject's space are 11 11 15 WARN: Could not find satisfactory control point fit - try 19 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.117156 INFO: Points where local peaks in curvature occur are 44 65 56 (curv = 0.208679) 38 64 54 (curv = 0.181554) 29 73 51 (curv = 0.124419) INFO: Intermediate dominant points are 52 67 51 44 65 56 38 64 54 23 76 53 INFO: Final dominant points are 52 67 51 44 65 56 38 64 54 23 76 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 52 67 51 42 64 56 32 69 53 23 76 53 INFO: Distances between consecutive points are 12 12 11 INFO: Selected control points in test subject's space are 64 63 39 53 62 44 42 68 40 31 76 39 INFO: Distances between consecutive points in test subject's space are 12 13 14 WARN: Could not find satisfactory control point fit - try 20 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.102963 INFO: Points where local peaks in curvature occur are 40 63 55 (curv = 0.188142) 35 64 52 (curv = 0.1217) 24 70 52 (curv = 0.247221) INFO: Intermediate dominant points are 51 67 52 40 63 55 24 70 52 25 77 48 INFO: Final dominant points are 51 67 52 40 63 55 24 70 52 25 77 48 WARN: Defaulting to equidistant control points INFO: Selected control points are 51 67 52 40 63 55 30 68 52 25 77 48 INFO: Distances between consecutive points are 12 12 11 INFO: Selected control points in test subject's space are 63 63 40 51 61 43 40 67 40 34 76 34 INFO: Distances between consecutive points in test subject's space are 13 13 12 WARN: Could not find satisfactory control point fit - try 21 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0839921 INFO: Points where local peaks in curvature occur are 36 65 52 (curv = 0.13553) INFO: Intermediate dominant points are 51 67 53 42 65 53 36 65 52 24 75 53 INFO: Final dominant points are 51 67 53 43 66 53 36 65 52 24 75 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 51 67 53 43 66 53 32 68 51 24 75 53 INFO: Distances between consecutive points are 8 11 11 INFO: Selected control points in test subject's space are 63 64 40 55 63 40 42 67 38 32 74 39 INFO: Distances between consecutive points in test subject's space are 8 14 12 WARN: Could not find satisfactory control point fit - try 22 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.112203 INFO: Points where local peaks in curvature occur are 43 66 53 (curv = 0.208813) 39 65 52 (curv = 0.20654) 34 69 48 (curv = 0.113793) INFO: Intermediate dominant points are 50 66 50 43 66 53 33 71 48 25 80 50 INFO: Final dominant points are 50 66 50 43 66 53 29 75 48 25 80 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 50 66 50 40 66 52 33 71 48 25 80 50 INFO: Distances between consecutive points are 10 9 12 INFO: Selected control points in test subject's space are 62 62 38 51 63 39 43 69 35 34 79 35 INFO: Distances between consecutive points in test subject's space are 11 11 13 WARN: Could not find satisfactory control point fit - try 23 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.109798 INFO: Points where local peaks in curvature occur are 42 65 55 (curv = 0.184636) 23 74 51 (curv = 0.287399) INFO: Intermediate dominant points are 52 65 51 42 65 55 23 74 51 26 84 45 INFO: Final dominant points are 52 65 51 42 65 55 23 74 51 26 84 45 WARN: Defaulting to equidistant control points INFO: Selected control points are 52 65 51 38 64 54 25 72 51 26 84 45 INFO: Distances between consecutive points are 14 16 13 INFO: Selected control points in test subject's space are 64 61 39 49 62 42 33 71 38 35 82 29 INFO: Distances between consecutive points in test subject's space are 15 19 14 WARN: Could not find satisfactory control point fit - try 24 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0901901 INFO: Points where local peaks in curvature occur are 38 64 55 (curv = 0.281028) 29 71 51 (curv = 0.11329) INFO: Intermediate dominant points are 50 67 55 38 64 55 29 71 51 25 84 49 INFO: Final dominant points are 50 67 55 38 64 55 29 71 51 25 84 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 50 67 55 40 64 55 30 71 51 25 84 49 INFO: Distances between consecutive points are 10 13 14 INFO: Selected control points in test subject's space are 62 64 42 51 62 43 39 70 38 34 83 33 INFO: Distances between consecutive points in test subject's space are 11 15 15 WARN: Could not find satisfactory control point fit - try 25 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.113548 INFO: Points where local peaks in curvature occur are 46 66 53 (curv = 0.14319) 44 66 53 (curv = 0.123781) 39 63 54 (curv = 0.443955) 33 67 50 (curv = 0.148453) INFO: Intermediate dominant points are 52 68 55 39 63 54 30 72 50 27 85 44 INFO: Final dominant points are 52 68 55 39 63 54 27 79 47 27 85 44 WARN: Defaulting to equidistant control points INFO: Selected control points are 52 68 55 41 64 55 30 71 50 27 85 44 INFO: Distances between consecutive points are 12 14 16 INFO: Selected control points in test subject's space are 64 65 42 52 62 42 39 69 37 36 83 28 INFO: Distances between consecutive points in test subject's space are 12 16 17 WARN: Could not find satisfactory control point fit - try 26 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.114023 INFO: Points where local peaks in curvature occur are 41 64 56 (curv = 0.385205) 37 66 52 (curv = 0.221259) INFO: Intermediate dominant points are 49 65 51 41 64 56 30 72 50 25 82 49 INFO: Final dominant points are 49 65 51 41 64 56 27 77 49 25 82 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 49 65 51 39 64 55 31 71 50 25 82 49 INFO: Distances between consecutive points are 11 12 13 INFO: Selected control points in test subject's space are 61 61 39 50 62 43 41 69 37 34 81 34 INFO: Distances between consecutive points in test subject's space are 12 13 14 WARN: Could not find satisfactory control point fit - try 27 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0936407 INFO: Points where local peaks in curvature occur are 41 64 55 (curv = 0.276269) 38 66 51 (curv = 0.144517) 32 68 51 (curv = 0.125794) INFO: Intermediate dominant points are 53 65 51 41 64 55 31 70 50 26 82 46 INFO: Final dominant points are 53 65 51 41 64 55 26 74 49 26 82 46 WARN: Defaulting to equidistant control points INFO: Selected control points are 53 65 51 41 64 54 32 69 50 26 82 46 INFO: Distances between consecutive points are 12 11 15 INFO: Selected control points in test subject's space are 65 61 39 52 61 41 42 67 37 35 80 30 INFO: Distances between consecutive points in test subject's space are 13 12 16 WARN: Could not find satisfactory control point fit - try 28 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0917377 INFO: Points where local peaks in curvature occur are 41 64 56 (curv = 0.250591) 35 66 50 (curv = 0.225752) INFO: Intermediate dominant points are 52 65 52 41 64 56 35 66 50 26 83 47 INFO: Final dominant points are 52 65 52 41 64 56 35 66 50 26 83 47 WARN: Defaulting to equidistant control points INFO: Selected control points are 52 65 52 40 64 56 31 69 49 26 83 47 INFO: Distances between consecutive points are 13 12 15 INFO: Selected control points in test subject's space are 64 62 40 51 62 44 41 67 36 35 82 31 INFO: Distances between consecutive points in test subject's space are 14 14 17 WARN: Could not find satisfactory control point fit - try 29 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.108243 INFO: Points where local peaks in curvature occur are 42 65 56 (curv = 0.167646) 34 66 52 (curv = 0.111307) 32 68 52 (curv = 0.146303) 31 69 50 (curv = 0.110309) INFO: Intermediate dominant points are 52 66 53 42 65 56 32 68 52 27 84 45 INFO: Final dominant points are 52 66 53 42 65 56 32 68 52 27 84 45 WARN: Defaulting to equidistant control points INFO: Selected control points are 52 66 53 39 64 55 30 71 50 27 84 45 INFO: Distances between consecutive points are 13 12 14 INFO: Selected control points in test subject's space are 64 63 41 50 62 43 39 69 37 36 82 29 INFO: Distances between consecutive points in test subject's space are 14 14 16 WARN: Could not find satisfactory control point fit - try 30 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0931475 INFO: Points where local peaks in curvature occur are 43 64 55 (curv = 0.257353) 26 75 49 (curv = 0.108093) 25 78 49 (curv = 0.103232) INFO: Intermediate dominant points are 50 64 49 43 64 55 26 75 49 26 86 46 INFO: Final dominant points are 50 64 49 43 64 55 26 75 49 26 86 46 WARN: Defaulting to equidistant control points INFO: Selected control points are 50 64 49 39 64 54 28 73 49 26 86 46 INFO: Distances between consecutive points are 12 15 13 INFO: Selected control points in test subject's space are 62 60 37 50 62 42 37 71 35 35 85 30 INFO: Distances between consecutive points in test subject's space are 13 17 15 WARN: Could not find satisfactory control point fit - try 31 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.1127 INFO: Points where local peaks in curvature occur are 43 64 56 (curv = 0.336633) 30 69 51 (curv = 0.206455) INFO: Intermediate dominant points are 50 65 51 43 64 56 30 69 51 26 82 45 INFO: Final dominant points are 50 65 51 43 64 56 30 69 51 26 82 45 WARN: Defaulting to equidistant control points INFO: Selected control points are 50 65 51 40 64 54 29 70 50 26 82 45 INFO: Distances between consecutive points are 10 13 13 INFO: Selected control points in test subject's space are 62 61 39 51 62 41 38 69 37 35 80 29 INFO: Distances between consecutive points in test subject's space are 11 15 14 WARN: Could not find satisfactory control point fit - try 32 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0975848 INFO: Points where local peaks in curvature occur are 46 67 53 (curv = 0.183187) 41 65 55 (curv = 0.195292) 35 67 51 (curv = 0.125813) INFO: Intermediate dominant points are 51 66 53 41 65 55 35 67 51 25 82 49 INFO: Final dominant points are 51 66 53 41 65 55 35 67 51 25 82 49 WARN: Defaulting to equidistant control points INFO: Selected control points are 51 66 53 41 65 55 32 70 50 25 82 49 INFO: Distances between consecutive points are 10 11 14 INFO: Selected control points in test subject's space are 63 63 41 52 63 42 42 68 37 34 81 34 INFO: Distances between consecutive points in test subject's space are 11 12 16 WARN: Could not find satisfactory control point fit - try 33 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.110775 INFO: Points where local peaks in curvature occur are 40 64 55 (curv = 0.436212) 36 66 50 (curv = 0.196296) INFO: Intermediate dominant points are 50 65 49 40 64 55 36 66 50 23 80 48 INFO: Final dominant points are 50 65 49 40 64 55 36 66 50 23 80 48 INFO: Selected control points are 50 65 49 40 64 54 35 65 50 23 80 48 INFO: Distances between consecutive points are 11 6 19 INFO: Selected control points in test subject's space are 62 61 37 51 62 41 46 63 37 31 79 33 INFO: Distances between consecutive points in test subject's space are 12 6 22 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_cpts_4.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.ar_avg16_syn_bbr_cpts_4.nii.gz Done in 1.94 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/lh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/lh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/lh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/lh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/lh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/lh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/lh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/lh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/lh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/lh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/lh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/lh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/lh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/lh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/lh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/lh.atr.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 20000 total streamlines (min/mean/max length: 36/47/60) Processing pathway 15 of 42... INFO: Have 20000 non-truncated streamlines (min/mean/max length: 36/47/60) Computing path histograms INFO: Total streamline volume is 11217 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 13 segments Computing prior on underlying anatomy (all streamlines) Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0853451 INFO: Points where local peaks in curvature occur are 72 110 49 (curv = 0.127143) 74 107 48 (curv = 0.278855) INFO: Intermediate dominant points are 65 119 54 74 107 48 71 91 50 63 73 53 INFO: Final dominant points are 65 119 54 74 107 48 65 82 50 63 73 53 INFO: Selected control points are 65 119 54 73 105 47 63 80 48 63 73 53 INFO: Distances between consecutive points are 18 27 9 INFO: Selected control points in test subject's space are 77 119 32 85 102 28 73 77 33 73 70 40 INFO: Distances between consecutive points in test subject's space are 19 28 10 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_cpts_4.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.atr_avg16_syn_bbr_cpts_4.nii.gz Done in 3.984 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/rh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/rh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/rh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/rh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/rh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/rh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/rh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/rh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/rh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/rh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/rh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/rh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/rh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/rh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/rh.atr.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/rh.atr.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 14 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 19986 total streamlines (min/mean/max length: 36/47/59) Processing pathway 16 of 42... INFO: Have 19986 non-truncated streamlines (min/mean/max length: 36/47/59) Computing path histograms INFO: Total streamline volume is 11121 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 13 segments Computing prior on underlying anatomy (all streamlines) Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0844244 INFO: Points where local peaks in curvature occur are 44 104 49 (curv = 0.227439) 47 100 47 (curv = 0.198259) 47 94 51 (curv = 0.0885038) INFO: Intermediate dominant points are 48 120 57 44 104 49 47 93 51 55 76 52 INFO: Final dominant points are 48 120 57 44 104 49 52 85 52 55 76 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 48 120 57 46 106 50 47 94 51 55 76 52 INFO: Distances between consecutive points are 16 12 20 INFO: Selected control points in test subject's space are 59 122 35 58 104 30 58 92 34 68 73 38 INFO: Distances between consecutive points in test subject's space are 19 13 22 WARN: Could not find satisfactory control point fit - try 1 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0592677 INFO: Points where local peaks in curvature occur are 44 104 49 (curv = 0.117955) 47 98 49 (curv = 0.0599116) 48 91 52 (curv = 0.0847295) INFO: Intermediate dominant points are 53 120 56 44 104 49 48 91 52 55 77 50 INFO: Final dominant points are 53 120 56 44 104 49 48 91 52 55 77 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 53 120 56 47 110 51 47 93 51 55 77 50 INFO: Distances between consecutive points are 13 17 18 INFO: Selected control points in test subject's space are 64 121 34 59 109 31 58 91 34 68 74 36 INFO: Distances between consecutive points in test subject's space are 13 18 20 WARN: Could not find satisfactory control point fit - try 2 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0737854 INFO: Points where local peaks in curvature occur are 44 103 48 (curv = 0.130093) 46 98 47 (curv = 0.140599) 47 93 51 (curv = 0.156681) INFO: Intermediate dominant points are 54 120 55 45 106 49 47 93 51 55 78 52 INFO: Final dominant points are 54 120 55 46 99 47 47 93 51 55 78 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 54 120 55 46 107 49 47 94 50 55 78 52 INFO: Distances between consecutive points are 16 13 18 INFO: Selected control points in test subject's space are 65 121 33 58 105 29 58 91 33 68 75 37 INFO: Distances between consecutive points in test subject's space are 18 15 19 WARN: Could not find satisfactory control point fit - try 3 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0705231 INFO: Points where local peaks in curvature occur are 43 106 48 (curv = 0.170942) 45 99 47 (curv = 0.133365) 49 92 51 (curv = 0.080491) INFO: Intermediate dominant points are 54 119 55 43 106 48 49 92 51 56 75 51 INFO: Final dominant points are 54 119 55 43 106 48 49 92 51 56 75 51 WARN: Defaulting to equidistant control points INFO: Selected control points are 54 119 55 44 107 49 48 93 51 56 75 51 INFO: Distances between consecutive points are 17 15 20 INFO: Selected control points in test subject's space are 65 119 33 56 105 29 60 91 34 68 72 37 INFO: Distances between consecutive points in test subject's space are 17 15 21 WARN: Could not find satisfactory control point fit - try 4 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0626919 INFO: Points where local peaks in curvature occur are 44 105 49 (curv = 0.151816) 46 98 48 (curv = 0.067463) 46 93 50 (curv = 0.0916713) INFO: Intermediate dominant points are 53 118 53 44 105 49 46 93 50 56 75 53 INFO: Final dominant points are 53 118 53 44 105 49 46 93 50 56 75 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 53 118 53 44 105 49 48 91 50 56 75 53 INFO: Distances between consecutive points are 16 15 18 INFO: Selected control points in test subject's space are 64 118 31 56 103 30 60 89 34 68 72 39 INFO: Distances between consecutive points in test subject's space are 17 15 19 WARN: Could not find satisfactory control point fit - try 5 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.111333 INFO: Points where local peaks in curvature occur are 43 104 49 (curv = 0.349673) 47 99 48 (curv = 0.212736) 47 95 52 (curv = 0.139585) INFO: Intermediate dominant points are 48 120 56 43 104 49 47 94 52 55 78 52 INFO: Final dominant points are 48 120 56 43 104 49 51 86 52 55 78 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 48 120 56 44 106 51 47 94 52 55 78 52 INFO: Distances between consecutive points are 15 12 18 INFO: Selected control points in test subject's space are 59 121 34 56 104 31 58 92 35 68 75 37 INFO: Distances between consecutive points in test subject's space are 18 13 20 WARN: Could not find satisfactory control point fit - try 6 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0580454 INFO: Points where local peaks in curvature occur are 44 105 48 (curv = 0.189845) 46 95 49 (curv = 0.0663366) 53 85 51 (curv = 0.0873536) INFO: Intermediate dominant points are 48 120 53 44 105 48 53 85 51 55 75 54 INFO: Final dominant points are 48 120 53 44 105 48 53 85 51 55 75 54 WARN: Defaulting to equidistant control points INFO: Selected control points are 48 120 53 44 107 48 50 90 51 55 75 54 INFO: Distances between consecutive points are 14 18 16 INFO: Selected control points in test subject's space are 59 120 30 56 105 28 62 88 35 67 72 40 INFO: Distances between consecutive points in test subject's space are 15 19 17 WARN: Could not find satisfactory control point fit - try 7 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0536315 INFO: Points where local peaks in curvature occur are 50 113 54 (curv = 0.0664336) 45 106 50 (curv = 0.117105) 46 97 48 (curv = 0.0891445) 48 92 50 (curv = 0.0771747) INFO: Intermediate dominant points are 53 120 57 45 106 50 48 92 50 56 74 53 INFO: Final dominant points are 53 120 57 45 106 50 48 92 50 56 74 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 53 120 57 47 108 52 47 93 49 56 74 53 INFO: Distances between consecutive points are 14 15 21 INFO: Selected control points in test subject's space are 64 121 35 59 107 32 59 90 32 68 71 39 INFO: Distances between consecutive points in test subject's space are 15 17 22 WARN: Could not find satisfactory control point fit - try 8 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0646083 INFO: Points where local peaks in curvature occur are 44 105 49 (curv = 0.203855) INFO: Intermediate dominant points are 47 120 54 44 105 49 48 91 50 55 76 52 INFO: Final dominant points are 47 120 54 44 105 49 53 84 51 55 76 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 47 120 54 46 107 50 48 91 50 55 76 52 INFO: Distances between consecutive points are 14 16 17 INFO: Selected control points in test subject's space are 58 121 31 58 105 30 60 89 34 68 73 38 INFO: Distances between consecutive points in test subject's space are 16 17 18 WARN: Could not find satisfactory control point fit - try 9 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0763792 INFO: Points where local peaks in curvature occur are 48 114 53 (curv = 0.194538) 43 104 49 (curv = 0.260634) INFO: Intermediate dominant points are 46 120 47 43 104 49 49 91 50 56 75 50 INFO: Final dominant points are 46 120 47 43 104 49 53 84 50 56 75 50 WARN: Defaulting to equidistant control points INFO: Selected control points are 46 120 47 45 106 51 49 91 50 56 75 50 INFO: Distances between consecutive points are 15 16 17 INFO: Selected control points in test subject's space are 58 119 23 57 104 32 61 89 34 68 72 36 INFO: Distances between consecutive points in test subject's space are 18 16 18 WARN: Could not find satisfactory control point fit - try 10 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0609991 INFO: Points where local peaks in curvature occur are 44 103 49 (curv = 0.184043) 47 92 52 (curv = 0.0810024) INFO: Intermediate dominant points are 54 120 54 44 103 49 48 90 53 56 74 53 INFO: Final dominant points are 54 120 54 44 103 49 53 81 52 56 74 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 54 120 54 44 106 49 48 90 53 56 74 53 INFO: Distances between consecutive points are 18 17 18 INFO: Selected control points in test subject's space are 65 120 31 56 104 29 60 88 37 68 71 39 INFO: Distances between consecutive points in test subject's space are 18 18 19 WARN: Could not find satisfactory control point fit - try 11 Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.053341 INFO: Points where local peaks in curvature occur are 44 107 49 (curv = 0.142923) 46 96 48 (curv = 0.0856066) INFO: Intermediate dominant points are 47 118 54 44 107 49 46 96 48 56 74 54 INFO: Final dominant points are 47 118 54 44 107 49 46 96 48 56 74 54 INFO: Selected control points are 47 118 54 45 105 48 46 94 48 56 74 54 INFO: Distances between consecutive points are 14 11 23 INFO: Selected control points in test subject's space are 59 118 32 57 103 29 57 91 31 68 71 40 INFO: Distances between consecutive points in test subject's space are 15 12 25 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_cpts_4.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_4.nii.gz Done in 6.387 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/lh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/lh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/lh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/lh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/lh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/lh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/lh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/lh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/lh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/lh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/lh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/lh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/lh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/lh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/lh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/lh.cbd.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 20000 total streamlines (min/mean/max length: 27/78/128) Processing pathway 17 of 42... INFO: Have 20000 non-truncated streamlines (min/mean/max length: 27/78/128) Computing path histograms INFO: Total streamline volume is 14061 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 16 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0647183 INFO: Points where local peaks in curvature occur are 68 105 55 (curv = 0.243696) 65 85 68 (curv = 0.117961) 68 57 67 (curv = 0.105216) 68 50 66 (curv = 0.145) INFO: Intermediate dominant points are 66 111 59 68 105 55 66 92 64 65 85 68 65 67 68 68 50 66 65 46 67 INFO: Final dominant points are 66 111 59 68 105 55 65 90 65 65 85 68 68 57 67 68 50 66 65 46 67 INFO: Selected control points are 66 111 59 68 105 56 65 90 65 64 84 68 67 58 67 68 51 66 65 46 67 INFO: Distances between consecutive points are 7 18 7 26 7 6 INFO: Selected control points in test subject's space are 78 111 39 80 103 38 76 89 49 75 84 53 78 56 57 79 49 57 76 44 58 INFO: Distances between consecutive points in test subject's space are 8 18 6 28 7 6 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cbd_avg16_syn_bbr_cpts_7.nii.gz Done in 4.899 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/rh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/rh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/rh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/rh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/rh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/rh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/rh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/rh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/rh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/rh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/rh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/rh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/rh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/rh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/rh.cbd.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/rh.cbd.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 20000 total streamlines (min/mean/max length: 30/79/128) Processing pathway 18 of 42... INFO: Have 20000 non-truncated streamlines (min/mean/max length: 30/79/128) Computing path histograms INFO: Total streamline volume is 14383 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 17 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0824197 INFO: Points where local peaks in curvature occur are 49 106 58 (curv = 0.301148) 50 52 65 (curv = 0.228577) 50 51 68 (curv = 0.310271) INFO: Intermediate dominant points are 55 108 61 49 106 58 53 91 64 54 79 68 54 65 69 50 51 68 56 46 68 INFO: Final dominant points are 55 108 61 49 106 58 54 86 66 54 72 68 51 56 65 50 51 68 56 46 68 INFO: Selected control points are 55 108 61 49 105 58 54 87 66 54 72 69 52 56 66 50 51 67 56 46 68 INFO: Distances between consecutive points are 7 20 15 16 5 8 INFO: Selected control points in test subject's space are 66 108 42 60 105 39 65 87 50 65 72 57 63 54 55 61 49 56 67 44 58 INFO: Distances between consecutive points in test subject's space are 7 22 17 18 5 8 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.cbd_avg16_syn_bbr_cpts_7.nii.gz Done in 5.117 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/lh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/lh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/lh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/lh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/lh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/lh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/lh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/lh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/lh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/lh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/lh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/lh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/lh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/lh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/lh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/lh.cbv.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 1897 total streamlines (min/mean/max length: 30/59/89) Processing pathway 19 of 42... INFO: Have 1655 non-truncated streamlines (min/mean/max length: 32/59/89) Computing path histograms INFO: Total streamline volume is 5826 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 14 segments Computing prior on underlying anatomy (all streamlines) Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.1121 INFO: Points where local peaks in curvature occur are 68 45 70 (curv = 0.145021) 72 48 66 (curv = 0.152888) 73 49 63 (curv = 0.285291) 68 51 59 (curv = 0.168501) INFO: Intermediate dominant points are 63 37 70 73 49 63 68 51 59 71 55 49 73 64 39 INFO: Final dominant points are 63 37 70 73 49 63 68 51 59 71 59 44 73 64 39 INFO: Selected control points are 63 37 70 74 51 64 68 50 58 72 59 44 73 64 39 INFO: Distances between consecutive points are 19 9 17 7 INFO: Selected control points in test subject's space are 74 35 63 85 49 55 80 47 49 84 54 33 85 58 27 INFO: Distances between consecutive points in test subject's space are 20 8 18 7 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_cpts_5.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_5.nii.gz Done in 2.019 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/rh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/rh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/rh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/rh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/rh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/rh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/rh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/rh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/rh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/rh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/rh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/rh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/rh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/rh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/rh.cbv.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/rh.cbv.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 3039 total streamlines (min/mean/max length: 39/60/89) Processing pathway 20 of 42... INFO: Have 2324 non-truncated streamlines (min/mean/max length: 39/61/89) Computing path histograms INFO: Total streamline volume is 6320 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 16 segments Computing prior on underlying anatomy (all streamlines) Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0925628 INFO: Points where local peaks in curvature occur are 47 52 63 (curv = 0.203612) 52 53 59 (curv = 0.378378) 51 55 53 (curv = 0.092743) 45 64 39 (curv = 0.130034) INFO: Intermediate dominant points are 53 41 73 48 50 65 52 53 59 45 64 39 41 68 36 INFO: Final dominant points are 53 41 73 47 52 63 52 53 59 45 64 39 41 68 36 INFO: Selected control points are 53 41 73 47 53 64 51 53 58 45 63 40 41 68 36 INFO: Distances between consecutive points are 16 7 21 8 INFO: Selected control points in test subject's space are 64 40 63 58 51 54 62 50 48 56 58 28 52 64 21 INFO: Distances between consecutive points in test subject's space are 15 7 22 10 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_cpts_5.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.cbv_avg16_syn_bbr_cpts_5.nii.gz Done in 2.144 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 1 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 18654 total streamlines (min/mean/max length: 58/80/94) Processing pathway 21 of 42... INFO: Have 17043 non-truncated streamlines (min/mean/max length: 58/79/94) Computing path histograms INFO: Total streamline volume is 15253 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 23 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0608141 INFO: Points where local peaks in curvature occur are 71 75 77 (curv = 0.163886) 76 76 67 (curv = 0.141413) 73 74 56 (curv = 0.0656984) 69 73 43 (curv = 0.0754731) 64 68 35 (curv = 0.0611023) 63 67 30 (curv = 0.0687847) INFO: Intermediate dominant points are 70 84 82 71 75 77 76 76 67 73 74 56 69 73 43 63 67 30 59 55 10 INFO: Final dominant points are 70 84 82 71 75 77 76 76 67 73 74 56 69 73 43 63 67 30 59 55 10 INFO: Selected control points are 70 84 82 70 76 76 76 76 67 73 74 56 68 72 43 63 67 31 59 55 10 INFO: Distances between consecutive points are 10 11 12 14 14 25 INFO: Selected control points in test subject's space are 82 85 67 81 76 63 87 74 55 84 71 42 79 67 30 75 60 18 71 45 2 INFO: Distances between consecutive points in test subject's space are 10 10 14 14 14 22 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.nii.gz Done in 4.885 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 43 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 14426 total streamlines (min/mean/max length: 64/80/97) Processing pathway 22 of 42... INFO: Have 13012 non-truncated streamlines (min/mean/max length: 64/79/97) Computing path histograms INFO: Total streamline volume is 13420 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 23 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0382041 INFO: Points where local peaks in curvature occur are 49 72 79 (curv = 0.0550884) 45 73 66 (curv = 0.106965) 46 72 62 (curv = 0.0882371) 45 73 56 (curv = 0.0686486) 48 72 43 (curv = 0.0500549) 56 67 29 (curv = 0.0592745) 58 58 16 (curv = 0.0754207) INFO: Intermediate dominant points are 49 71 87 49 72 79 45 73 66 45 73 56 56 67 29 58 58 16 57 55 9 INFO: Final dominant points are 49 71 87 49 72 79 45 73 66 45 73 56 56 67 29 58 58 16 57 55 9 INFO: Selected control points are 49 71 87 49 72 78 46 73 66 45 73 55 55 67 30 58 58 17 57 55 9 INFO: Distances between consecutive points are 9 12 11 28 16 9 INFO: Selected control points in test subject's space are 57 72 75 59 72 65 57 72 53 57 71 41 67 60 16 70 49 7 70 45 2 INFO: Distances between consecutive points in test subject's space are 10 12 12 29 15 6 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7.nii.gz Done in 4.336 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/lh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/lh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/lh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/lh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/lh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/lh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/lh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/lh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/lh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/lh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/lh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/lh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/lh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/lh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/lh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/lh.emc.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 3255 total streamlines (min/mean/max length: 41/76/106) Processing pathway 23 of 42... INFO: Have 3182 non-truncated streamlines (min/mean/max length: 41/76/106) Computing path histograms INFO: Total streamline volume is 8514 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 19 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.129329 INFO: Points where local peaks in curvature occur are 77 105 48 (curv = 0.243621) 73 94 46 (curv = 0.139203) 87 69 41 (curv = 0.137271) 88 65 40 (curv = 0.192228) 93 62 43 (curv = 0.560387) INFO: Intermediate dominant points are 83 104 45 73 94 46 77 90 44 81 79 40 88 65 40 93 62 43 95 68 39 INFO: Final dominant points are 83 104 45 73 94 46 79 86 43 86 70 41 88 65 40 93 62 43 95 68 39 INFO: Selected control points are 83 104 45 73 96 47 79 85 41 86 70 40 88 65 41 93 62 43 95 68 39 INFO: Distances between consecutive points are 13 14 17 5 6 7 INFO: Selected control points in test subject's space are 96 100 26 85 92 30 90 81 27 98 65 27 100 60 29 106 57 33 109 63 27 INFO: Distances between consecutive points in test subject's space are 14 12 18 6 8 9 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.emc_avg16_syn_bbr_cpts_7.nii.gz Done in 2.23 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/rh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/rh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/rh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/rh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/rh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/rh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/rh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/rh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/rh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/rh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/rh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/rh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/rh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/rh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/rh.emc.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/rh.emc.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 3726 total streamlines (min/mean/max length: 53/78/103) Processing pathway 24 of 42... INFO: Have 3651 non-truncated streamlines (min/mean/max length: 53/78/103) Computing path histograms INFO: Total streamline volume is 8407 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 20 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.132132 INFO: Points where local peaks in curvature occur are 38 104 47 (curv = 0.291422) 44 100 46 (curv = 0.219288) 33 70 40 (curv = 0.154922) 30 66 41 (curv = 0.158471) 26 64 41 (curv = 0.196981) 21 67 42 (curv = 0.516116) INFO: Intermediate dominant points are 33 101 41 38 104 47 44 100 46 39 80 43 33 70 40 21 67 42 24 72 38 INFO: Final dominant points are 33 101 41 38 104 47 44 100 46 37 75 42 26 64 41 21 67 42 24 72 38 INFO: Selected control points are 33 101 41 38 104 47 44 100 46 37 76 42 27 65 41 21 67 42 24 72 38 INFO: Distances between consecutive points are 8 7 25 15 6 7 INFO: Selected control points in test subject's space are 43 98 20 50 102 27 55 97 27 48 73 27 37 63 29 29 65 29 33 69 24 INFO: Distances between consecutive points in test subject's space are 11 7 25 15 8 8 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.emc_avg16_syn_bbr_cpts_7.nii.gz Done in 2.264 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/lh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/lh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/lh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/lh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/lh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/lh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/lh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/lh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/lh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/lh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/lh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/lh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/lh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/lh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/lh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/lh.fat.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 20000 total streamlines (min/mean/max length: 27/52/74) Processing pathway 25 of 42... INFO: Have 20000 non-truncated streamlines (min/mean/max length: 27/52/74) Computing path histograms INFO: Total streamline volume is 12130 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 13 segments Computing prior on underlying anatomy (all streamlines) Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.106989 INFO: Points where local peaks in curvature occur are 76 88 63 (curv = 0.203249) 86 92 57 (curv = 0.441593) INFO: Intermediate dominant points are 67 93 84 70 90 73 76 88 63 86 92 57 89 88 52 INFO: Final dominant points are 67 93 84 74 89 68 76 88 63 86 92 57 89 88 52 INFO: Selected control points are 67 93 84 73 89 67 76 88 63 86 91 57 89 88 52 INFO: Distances between consecutive points are 18 5 12 7 INFO: Selected control points in test subject's space are 79 96 69 84 88 51 87 86 47 97 89 42 101 85 38 INFO: Distances between consecutive points in test subject's space are 20 5 12 7 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_cpts_5.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.fat_avg16_syn_bbr_cpts_5.nii.gz Done in 3.948 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/rh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/rh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/rh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/rh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/rh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/rh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/rh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/rh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/rh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/rh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/rh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/rh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/rh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/rh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/rh.fat.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/rh.fat.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 20000 total streamlines (min/mean/max length: 28/52/74) Processing pathway 26 of 42... INFO: Have 20000 non-truncated streamlines (min/mean/max length: 28/52/74) Computing path histograms INFO: Total streamline volume is 12448 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 13 segments Computing prior on underlying anatomy (all streamlines) Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0655675 INFO: Points where local peaks in curvature occur are 48 89 70 (curv = 0.115155) 42 88 62 (curv = 0.187081) INFO: Intermediate dominant points are 52 91 82 48 89 70 42 88 62 37 90 59 29 89 54 INFO: Final dominant points are 52 91 82 48 89 70 42 88 62 34 90 57 29 89 54 INFO: Selected control points are 52 91 82 48 90 69 42 88 62 34 91 57 29 89 54 INFO: Distances between consecutive points are 14 9 10 6 INFO: Selected control points in test subject's space are 61 94 66 58 90 52 53 87 45 45 90 40 39 88 37 INFO: Distances between consecutive points in test subject's space are 15 9 10 7 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_cpts_5.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.fat_avg16_syn_bbr_cpts_5.nii.gz Done in 4.087 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/lh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/lh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/lh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/lh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/lh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/lh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/lh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/lh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/lh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/lh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/lh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/lh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/lh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/lh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/lh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/lh.fx.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 7 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 2458 total streamlines (min/mean/max length: 73/99/127) Processing pathway 27 of 42... INFO: Have 1228 non-truncated streamlines (min/mean/max length: 79/100/127) Computing path histograms INFO: Total streamline volume is 5262 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 29 segments Computing prior on underlying anatomy (all streamlines) Selecting 9 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0939701 INFO: Points where local peaks in curvature occur are 60 74 59 (curv = 0.14794) 63 67 59 (curv = 0.134195) 67 63 56 (curv = 0.129177) 71 61 54 (curv = 0.110826) 78 63 47 (curv = 0.26909) 77 69 45 (curv = 0.0956317) 82 77 37 (curv = 0.114914) INFO: Intermediate dominant points are 61 83 46 61 79 56 60 74 59 63 67 59 67 63 56 78 63 47 77 69 45 82 77 37 79 83 26 INFO: Final dominant points are 61 83 46 61 78 56 60 74 59 63 67 59 67 63 56 78 63 47 77 69 45 82 77 37 79 83 26 INFO: Selected control points are 61 83 46 61 79 57 60 74 59 63 67 58 68 62 57 78 63 47 77 69 45 81 78 37 79 83 26 INFO: Distances between consecutive points are 12 5 8 7 14 6 13 12 INFO: Selected control points in test subject's space are 72 80 31 72 77 42 71 72 45 74 65 46 79 60 46 89 58 35 88 65 31 92 73 23 91 76 10 INFO: Distances between consecutive points in test subject's space are 11 6 8 7 15 8 12 13 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_cpts_9.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.fx_avg16_syn_bbr_cpts_9.nii.gz Done in 2.267 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/rh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/rh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/rh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/rh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/rh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/rh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/rh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/rh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/rh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/rh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/rh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/rh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/rh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/rh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/rh.fx.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/rh.fx.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 2309 total streamlines (min/mean/max length: 73/98/126) Processing pathway 28 of 42... INFO: Have 1103 non-truncated streamlines (min/mean/max length: 76/101/126) Computing path histograms INFO: Total streamline volume is 4974 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 29 segments Computing prior on underlying anatomy (all streamlines) Selecting 9 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0822116 INFO: Points where local peaks in curvature occur are 58 86 46 (curv = 0.223098) 58 81 56 (curv = 0.0968239) 57 77 59 (curv = 0.0869366) 56 70 60 (curv = 0.116944) 54 66 58 (curv = 0.112251) 44 61 53 (curv = 0.160257) 41 61 49 (curv = 0.150229) 39 68 44 (curv = 0.0856788) 40 73 41 (curv = 0.083317) 37 78 33 (curv = 0.127035) INFO: Intermediate dominant points are 56 83 41 58 86 46 58 81 56 56 70 60 49 63 56 44 61 53 40 73 41 37 78 33 41 83 28 INFO: Final dominant points are 56 83 41 58 86 46 58 81 56 56 70 60 48 63 55 44 61 53 40 73 41 37 78 33 41 83 28 INFO: Selected control points are 56 83 41 58 85 47 58 81 57 56 70 60 49 63 55 43 60 52 39 72 41 37 79 33 41 83 28 INFO: Distances between consecutive points are 7 11 12 11 7 17 11 8 INFO: Selected control points in test subject's space are 68 79 27 70 82 32 70 80 41 67 68 47 60 60 43 55 57 40 51 69 26 49 74 17 54 77 10 INFO: Distances between consecutive points in test subject's space are 6 9 14 11 7 19 10 9 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_cpts_9.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_9.nii.gz Done in 2.287 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/lh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/lh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/lh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/lh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/lh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/lh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/lh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/lh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/lh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/lh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/lh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/lh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/lh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/lh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/lh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/lh.ilf.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 16 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 19984 total streamlines (min/mean/max length: 60/89/115) Processing pathway 29 of 42... INFO: Have 19984 non-truncated streamlines (min/mean/max length: 60/89/115) Computing path histograms INFO: Total streamline volume is 25660 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 25 segments Computing prior on underlying anatomy (all streamlines) Selecting 8 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0581179 INFO: Points where local peaks in curvature occur are 85 77 37 (curv = 0.152285) 83 74 39 (curv = 0.314549) 84 56 45 (curv = 0.0722131) 81 48 49 (curv = 0.0613666) 71 34 49 (curv = 0.0932476) INFO: Intermediate dominant points are 84 85 31 83 74 39 84 68 41 84 56 45 81 48 49 78 41 50 71 34 49 66 28 45 INFO: Final dominant points are 84 85 31 83 74 39 85 61 44 84 56 45 81 48 49 75 38 50 71 34 49 66 28 45 INFO: Selected control points are 84 85 31 84 74 39 84 62 43 84 56 46 81 48 49 76 38 50 71 34 49 66 28 45 INFO: Distances between consecutive points are 14 13 7 9 11 6 9 INFO: Selected control points in test subject's space are 96 79 16 96 70 26 95 57 31 95 52 37 92 44 41 88 33 44 83 30 44 79 22 41 INFO: Distances between consecutive points in test subject's space are 13 14 8 9 12 6 9 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_cpts_8.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.ilf_avg16_syn_bbr_cpts_8.nii.gz Done in 5.775 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/rh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/rh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/rh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/rh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/rh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/rh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/rh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/rh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/rh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/rh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/rh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/rh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/rh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/rh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/rh.ilf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/rh.ilf.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 14 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 19986 total streamlines (min/mean/max length: 70/88/110) Processing pathway 30 of 42... INFO: Have 19986 non-truncated streamlines (min/mean/max length: 70/88/110) Computing path histograms INFO: Total streamline volume is 28010 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 25 segments Computing prior on underlying anatomy (all streamlines) Selecting 8 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0713758 INFO: Points where local peaks in curvature occur are 32 77 35 (curv = 0.186278) 35 70 43 (curv = 0.124588) 36 52 47 (curv = 0.0774648) 39 43 50 (curv = 0.108148) 46 34 50 (curv = 0.178865) INFO: Intermediate dominant points are 33 87 27 32 77 35 35 70 43 34 63 45 36 52 47 39 43 50 46 34 50 51 30 44 INFO: Final dominant points are 33 87 27 32 77 35 35 70 43 35 58 46 36 52 47 39 43 50 46 34 50 51 30 44 INFO: Selected control points are 33 87 27 33 77 35 34 70 43 35 58 46 37 52 47 40 43 50 46 34 50 51 30 44 INFO: Distances between consecutive points are 13 11 12 6 10 11 9 INFO: Selected control points in test subject's space are 45 82 9 44 73 20 45 67 29 47 55 35 49 49 38 52 39 43 57 30 44 62 23 39 INFO: Distances between consecutive points in test subject's space are 14 11 14 7 12 10 10 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_cpts_8.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.ilf_avg16_syn_bbr_cpts_8.nii.gz Done in 6.082 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/lh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/lh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/lh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/lh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/lh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/lh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/lh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/lh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/lh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/lh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/lh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/lh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/lh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/lh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/lh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/lh.mlf.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 10877 total streamlines (min/mean/max length: 48/76/109) Processing pathway 31 of 42... INFO: Have 9943 non-truncated streamlines (min/mean/max length: 48/74/109) Computing path histograms INFO: Total streamline volume is 17179 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 19 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0930248 INFO: Points where local peaks in curvature occur are 90 78 44 (curv = 0.15591) 87 72 48 (curv = 0.102872) 83 65 49 (curv = 0.137098) 80 63 52 (curv = 0.0946368) 80 60 55 (curv = 0.0942505) 81 57 57 (curv = 0.168485) 73 37 59 (curv = 0.164142) 69 35 62 (curv = 0.22513) INFO: Intermediate dominant points are 91 85 41 90 78 44 83 65 49 81 57 57 78 46 60 69 35 62 69 32 72 INFO: Final dominant points are 91 85 41 90 78 44 83 65 49 81 57 57 73 39 59 69 35 62 69 32 72 INFO: Selected control points are 91 85 41 90 78 45 83 66 49 80 57 58 74 39 60 70 35 62 69 32 72 INFO: Distances between consecutive points are 8 14 13 19 6 10 INFO: Selected control points in test subject's space are 105 81 27 103 75 32 95 63 37 91 55 48 85 36 55 82 32 57 81 30 68 INFO: Distances between consecutive points in test subject's space are 8 15 14 21 5 11 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.mlf_avg16_syn_bbr_cpts_7.nii.gz Done in 3.475 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/rh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/rh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/rh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/rh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/rh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/rh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/rh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/rh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/rh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/rh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/rh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/rh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/rh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/rh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/rh.mlf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/rh.mlf.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 2 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 19998 total streamlines (min/mean/max length: 50/72/113) Processing pathway 32 of 42... INFO: Have 19998 non-truncated streamlines (min/mean/max length: 50/72/113) Computing path histograms INFO: Total streamline volume is 20231 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 19 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0971131 INFO: Points where local peaks in curvature occur are 27 76 46 (curv = 0.170062) 30 72 49 (curv = 0.111014) 35 67 49 (curv = 0.215758) 39 64 53 (curv = 0.155025) 38 57 60 (curv = 0.107233) 44 40 60 (curv = 0.28821) 45 35 67 (curv = 0.223126) INFO: Intermediate dominant points are 28 85 46 27 76 46 35 67 49 39 64 53 38 57 60 44 40 60 47 38 74 INFO: Final dominant points are 28 85 46 27 76 46 35 67 49 39 64 53 38 57 60 44 40 60 47 38 74 INFO: Selected control points are 28 85 46 27 76 47 35 68 50 39 64 53 38 57 61 43 39 61 47 38 74 INFO: Distances between consecutive points are 9 12 6 11 19 14 INFO: Selected control points in test subject's space are 38 83 30 36 74 33 45 66 37 50 62 40 49 56 50 54 36 54 58 37 66 INFO: Distances between consecutive points in test subject's space are 10 13 7 12 21 13 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.mlf_avg16_syn_bbr_cpts_7.nii.gz Done in 4.911 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/lh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/lh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/lh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/lh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/lh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/lh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/lh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/lh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/lh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/lh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/lh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/lh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/lh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/lh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/lh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/lh.or.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 4 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 19996 total streamlines (min/mean/max length: 32/54/75) Processing pathway 33 of 42... INFO: Have 19996 non-truncated streamlines (min/mean/max length: 32/54/75) Computing path histograms INFO: Total streamline volume is 15101 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 14 segments Computing prior on underlying anatomy (all streamlines) Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0980106 INFO: Points where local peaks in curvature occur are 70 30 52 (curv = 0.32217) 66 31 57 (curv = 0.233826) INFO: Intermediate dominant points are 66 64 48 80 57 52 78 40 54 70 30 52 74 30 63 INFO: Final dominant points are 66 64 48 80 50 54 77 37 54 70 30 52 74 30 63 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 64 48 80 58 52 78 41 54 68 31 54 74 30 63 INFO: Distances between consecutive points are 16 17 14 11 INFO: Selected control points in test subject's space are 77 59 37 91 55 42 89 37 48 81 28 50 86 26 60 INFO: Distances between consecutive points in test subject's space are 15 19 12 11 WARN: Could not find satisfactory control point fit - try 1 Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.130986 INFO: Points where local peaks in curvature occur are 70 31 51 (curv = 0.335736) 67 33 62 (curv = 0.801426) INFO: Intermediate dominant points are 67 65 49 80 56 52 77 39 51 70 31 51 68 32 55 INFO: Final dominant points are 67 65 49 80 47 54 76 38 51 70 31 51 68 32 55 ERROR: Degenerate spline segment 67 65 49 82 50 54 76 37 50 68 32 55 68 32 55 WARN: Defaulting to equidistant dominant points WARN: Defaulting to equidistant control points INFO: Selected control points are 67 65 49 80 56 52 77 39 51 66 32 56 68 32 55 INFO: Distances between consecutive points are 16 17 14 2 INFO: Selected control points in test subject's space are 78 60 38 91 53 42 89 34 45 79 29 52 81 29 51 INFO: Distances between consecutive points in test subject's space are 15 19 13 2 WARN: Could not find satisfactory control point fit - try 2 Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.147467 INFO: Points where local peaks in curvature occur are 74 65 51 (curv = 0.17313) 77 64 51 (curv = 0.169372) 70 29 55 (curv = 1.11759) INFO: Intermediate dominant points are 66 64 48 74 65 51 78 43 55 70 29 55 75 26 53 INFO: Final dominant points are 66 64 48 74 65 51 72 35 56 70 29 55 75 26 53 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 64 48 78 62 51 79 44 55 70 31 56 75 26 53 INFO: Distances between consecutive points are 13 18 16 8 INFO: Selected control points in test subject's space are 77 59 37 89 58 39 90 40 49 83 28 52 88 22 50 INFO: Distances between consecutive points in test subject's space are 12 21 14 8 WARN: Could not find satisfactory control point fit - try 3 Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0925077 INFO: Points where local peaks in curvature occur are 75 64 52 (curv = 0.228243) 79 47 55 (curv = 0.116323) 70 33 49 (curv = 0.159431) 64 31 52 (curv = 0.217916) INFO: Intermediate dominant points are 67 65 50 75 64 52 79 47 55 64 31 52 67 26 64 INFO: Final dominant points are 67 65 50 75 64 52 79 47 55 64 31 52 67 26 64 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 65 50 79 58 53 78 43 54 66 32 51 67 26 64 INFO: Distances between consecutive points are 14 15 17 14 INFO: Selected control points in test subject's space are 78 61 38 90 55 43 89 39 48 79 28 47 79 22 62 INFO: Distances between consecutive points in test subject's space are 14 17 15 16 WARN: Could not find satisfactory control point fit - try 4 Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0830439 INFO: Points where local peaks in curvature occur are 79 63 50 (curv = 0.143174) 81 54 54 (curv = 0.0841797) 70 32 51 (curv = 0.172756) INFO: Intermediate dominant points are 66 65 50 79 63 50 81 54 54 70 32 51 64 31 59 INFO: Final dominant points are 66 65 50 79 63 50 81 54 54 70 32 51 64 31 59 INFO: Selected control points are 66 65 50 79 63 50 82 53 54 70 33 51 64 31 59 INFO: Distances between consecutive points are 13 11 24 10 INFO: Selected control points in test subject's space are 77 61 39 90 59 38 93 50 45 83 29 46 77 28 55 INFO: Distances between consecutive points in test subject's space are 13 12 23 11 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_cpts_5.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.or_avg16_syn_bbr_cpts_5.nii.gz Done in 5.621 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/rh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/rh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/rh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/rh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/rh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/rh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/rh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/rh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/rh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/rh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/rh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/rh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/rh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/rh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/rh.or.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/rh.or.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 28 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 19338 total streamlines (min/mean/max length: 34/55/71) Processing pathway 34 of 42... INFO: Have 14586 non-truncated streamlines (min/mean/max length: 34/54/71) Computing path histograms INFO: Total streamline volume is 14530 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 14 segments Computing prior on underlying anatomy (all streamlines) Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0787671 INFO: Points where local peaks in curvature occur are 42 65 52 (curv = 0.156336) 46 30 56 (curv = 0.196545) INFO: Intermediate dominant points are 53 65 49 42 65 52 39 51 56 46 30 56 50 30 64 INFO: Final dominant points are 53 65 49 42 65 52 42 38 55 46 30 56 50 30 64 INFO: Selected control points are 53 65 49 41 64 52 41 40 56 46 31 55 50 30 64 INFO: Distances between consecutive points are 12 24 10 10 INFO: Selected control points in test subject's space are 65 61 38 53 61 39 52 37 50 57 29 49 60 27 58 INFO: Distances between consecutive points in test subject's space are 12 26 9 10 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_cpts_5.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.or_avg16_syn_bbr_cpts_5.nii.gz Done in 4.307 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/lh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/lh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/lh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/lh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/lh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/lh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/lh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/lh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/lh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/lh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/lh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/lh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/lh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/lh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/lh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/lh.slf1.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 4252 total streamlines (min/mean/max length: 30/79/118) Processing pathway 35 of 42... INFO: Have 3672 non-truncated streamlines (min/mean/max length: 30/79/118) Computing path histograms INFO: Total streamline volume is 12147 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 19 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0932034 INFO: Points where local peaks in curvature occur are 68 104 71 (curv = 0.223459) 69 101 69 (curv = 0.233108) 72 64 74 (curv = 0.121963) 70 51 77 (curv = 0.217867) 68 50 79 (curv = 0.374117) INFO: Intermediate dominant points are 64 107 77 69 101 69 68 89 75 69 77 76 72 64 74 68 50 79 63 51 83 INFO: Final dominant points are 64 107 77 69 101 69 68 84 76 70 72 76 72 64 74 68 50 79 63 51 83 INFO: Selected control points are 64 107 77 68 100 70 68 85 77 69 72 75 72 63 75 68 51 78 63 51 83 INFO: Distances between consecutive points are 11 17 13 9 13 7 INFO: Selected control points in test subject's space are 75 111 59 80 100 52 80 85 62 79 72 63 83 63 64 79 52 68 74 53 72 INFO: Distances between consecutive points in test subject's space are 14 18 13 10 12 6 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.slf1_avg16_syn_bbr_cpts_7.nii.gz Done in 2.502 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/rh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/rh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/rh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/rh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/rh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/rh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/rh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/rh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/rh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/rh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/rh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/rh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/rh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/rh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/rh.slf1.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/rh.slf1.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 5134 total streamlines (min/mean/max length: 37/79/127) Processing pathway 36 of 42... INFO: Have 4242 non-truncated streamlines (min/mean/max length: 37/79/127) Computing path histograms INFO: Total streamline volume is 12765 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 18 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.089911 INFO: Points where local peaks in curvature occur are 50 104 66 (curv = 0.432257) 52 96 71 (curv = 0.112668) 51 90 74 (curv = 0.130555) 47 64 71 (curv = 0.106115) 48 59 72 (curv = 0.17674) INFO: Intermediate dominant points are 55 106 72 50 104 66 51 90 74 50 77 74 47 65 71 48 59 72 55 51 83 INFO: Final dominant points are 55 106 72 50 104 66 51 90 74 48 72 72 47 65 71 48 59 72 55 51 83 INFO: Selected control points are 55 106 72 50 103 67 52 90 74 49 72 72 48 65 71 47 58 72 55 51 83 INFO: Distances between consecutive points are 8 15 18 7 7 15 INFO: Selected control points in test subject's space are 65 108 53 60 104 48 62 91 57 60 72 60 59 65 60 57 58 61 64 53 71 INFO: Distances between consecutive points in test subject's space are 8 16 19 7 7 13 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.slf1_avg16_syn_bbr_cpts_7.nii.gz Done in 2.795 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/lh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/lh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/lh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/lh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/lh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/lh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/lh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/lh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/lh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/lh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/lh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/lh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/lh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/lh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/lh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/lh.slf2.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 20000 total streamlines (min/mean/max length: 44/92/128) Processing pathway 37 of 42... INFO: Have 20000 non-truncated streamlines (min/mean/max length: 44/92/128) Computing path histograms INFO: Total streamline volume is 23300 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 23 segments Computing prior on underlying anatomy (all streamlines) Selecting 8 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0636453 INFO: Points where local peaks in curvature occur are 77 94 66 (curv = 0.0723017) 75 89 70 (curv = 0.112335) 75 74 72 (curv = 0.0927823) 76 63 71 (curv = 0.0804595) 78 50 66 (curv = 0.0917398) 80 45 62 (curv = 0.328213) INFO: Intermediate dominant points are 81 109 57 78 100 61 75 89 70 75 74 72 76 63 71 77 55 68 80 45 62 85 40 71 INFO: Final dominant points are 81 109 57 77 93 66 75 89 70 75 74 72 76 63 71 78 50 66 80 45 62 85 40 71 INFO: Selected control points are 81 109 57 76 94 65 75 88 70 75 74 71 76 63 70 78 50 66 80 45 62 85 40 71 INFO: Distances between consecutive points are 18 8 14 11 14 7 11 INFO: Selected control points in test subject's space are 93 109 38 88 92 48 87 87 54 86 73 59 87 62 60 88 48 58 90 42 56 97 37 67 INFO: Distances between consecutive points in test subject's space are 20 8 15 11 14 7 14 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_cpts_8.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.slf2_avg16_syn_bbr_cpts_8.nii.gz Done in 5.923 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/rh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/rh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/rh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/rh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/rh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/rh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/rh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/rh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/rh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/rh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/rh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/rh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/rh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/rh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/rh.slf2.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/rh.slf2.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 1 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 19999 total streamlines (min/mean/max length: 50/85/124) Processing pathway 38 of 42... INFO: Have 19999 non-truncated streamlines (min/mean/max length: 50/85/124) Computing path histograms INFO: Total streamline volume is 22252 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 21 segments Computing prior on underlying anatomy (all streamlines) Selecting 8 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.118397 INFO: Points where local peaks in curvature occur are 37 46 61 (curv = 0.941382) 39 48 64 (curv = 0.361379) INFO: Intermediate dominant points are 41 99 63 42 87 69 41 74 69 41 63 69 38 54 65 37 46 61 37 46 69 33 42 75 INFO: Final dominant points are 41 99 63 41 80 69 42 68 70 39 59 67 38 50 61 37 46 61 35 45 73 33 42 75 INFO: Selected control points are 41 99 63 42 80 70 42 68 69 39 59 67 37 50 61 38 47 61 36 46 72 33 42 75 INFO: Distances between consecutive points are 20 12 10 11 3 11 6 INFO: Selected control points in test subject's space are 52 99 45 53 80 56 52 68 57 49 59 56 48 48 52 49 45 53 47 46 63 41 42 69 INFO: Distances between consecutive points in test subject's space are 22 12 10 12 3 10 9 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_cpts_8.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.slf2_avg16_syn_bbr_cpts_8.nii.gz Done in 5.433 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/lh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/lh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/lh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/lh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/lh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/lh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/lh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/lh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/lh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/lh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/lh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/lh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/lh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/lh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/lh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/lh.slf3.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 20000 total streamlines (min/mean/max length: 27/70/109) Processing pathway 39 of 42... INFO: Have 20000 non-truncated streamlines (min/mean/max length: 27/70/109) Computing path histograms INFO: Total streamline volume is 19232 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 16 segments Computing prior on underlying anatomy (all streamlines) Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0861935 INFO: Points where local peaks in curvature occur are 80 102 54 (curv = 0.340364) 82 62 64 (curv = 0.135252) 84 57 63 (curv = 0.286435) INFO: Intermediate dominant points are 87 101 55 79 96 57 82 83 61 83 67 65 84 57 63 92 56 72 INFO: Final dominant points are 87 101 55 80 89 59 83 75 63 82 62 64 84 57 63 92 56 72 INFO: Selected control points are 87 101 55 78 91 58 84 75 63 82 63 65 84 57 64 92 56 72 INFO: Distances between consecutive points are 14 18 12 6 11 INFO: Selected control points in test subject's space are 99 99 37 89 89 42 96 73 51 93 61 55 95 54 55 105 54 65 INFO: Distances between consecutive points in test subject's space are 15 20 13 7 14 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_cpts_6.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.slf3_avg16_syn_bbr_cpts_6.nii.gz Done in 4.799 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/rh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/rh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/rh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/rh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/rh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/rh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/rh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/rh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/rh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/rh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/rh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/rh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/rh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/rh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/rh.slf3.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/rh.slf3.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 0 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 20000 total streamlines (min/mean/max length: 39/74/107) Processing pathway 40 of 42... INFO: Have 20000 non-truncated streamlines (min/mean/max length: 39/74/107) Computing path histograms INFO: Total streamline volume is 19143 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 17 segments Computing prior on underlying anatomy (all streamlines) Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0696434 INFO: Points where local peaks in curvature occur are 38 101 56 (curv = 0.234452) 40 98 57 (curv = 0.265109) 39 84 60 (curv = 0.084022) 34 60 66 (curv = 0.071648) 32 57 67 (curv = 0.0979678) INFO: Intermediate dominant points are 29 98 51 40 98 57 39 84 60 37 74 64 32 57 67 29 50 72 INFO: Final dominant points are 29 98 51 40 98 57 39 84 60 35 63 66 32 57 67 29 50 72 INFO: Selected control points are 29 98 51 40 99 57 38 84 61 35 65 66 33 57 67 29 50 72 INFO: Distances between consecutive points are 13 16 20 8 9 INFO: Selected control points in test subject's space are 39 97 32 52 98 39 49 83 46 45 65 54 43 57 57 37 50 64 INFO: Distances between consecutive points in test subject's space are 15 17 20 9 12 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_cpts_6.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.slf3_avg16_syn_bbr_cpts_6.nii.gz Done in 4.959 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/lh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/lh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/lh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/lh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/lh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/lh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/lh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/lh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/lh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/lh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/lh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/lh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/lh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/lh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/lh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/lh.uf.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 5 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 5241 total streamlines (min/mean/max length: 45/72/94) Processing pathway 41 of 42... INFO: Have 5228 non-truncated streamlines (min/mean/max length: 45/72/94) Computing path histograms INFO: Total streamline volume is 8013 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 19 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.123187 INFO: Points where local peaks in curvature occur are 69 111 42 (curv = 0.20455) 72 110 44 (curv = 0.226772) 72 97 44 (curv = 0.209667) 78 89 43 (curv = 0.133559) 79 83 41 (curv = 0.181283) 79 81 39 (curv = 0.18636) 81 81 35 (curv = 0.190609) INFO: Intermediate dominant points are 68 117 39 72 110 44 73 101 45 72 97 44 78 89 43 81 81 35 81 88 31 INFO: Final dominant points are 68 117 39 72 110 44 74 101 45 72 97 44 78 89 43 81 81 35 81 88 31 INFO: Selected control points are 68 117 39 72 109 44 74 102 45 72 96 44 77 88 43 81 81 36 81 88 31 INFO: Distances between consecutive points are 10 7 6 9 11 9 INFO: Selected control points in test subject's space are 81 114 16 83 106 24 86 98 27 83 92 27 88 84 28 92 76 22 92 82 15 INFO: Distances between consecutive points in test subject's space are 11 9 7 9 11 9 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.uf_avg16_syn_bbr_cpts_7.nii.gz Done in 2.388 sec. Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1001/syn/rh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1006/syn/rh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1007/syn/rh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1008/syn/rh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1009/syn/rh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1010/syn/rh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1011/syn/rh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1012/syn/rh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1013/syn/rh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1015/syn/rh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1016/syn/rh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1017/syn/rh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1019/syn/rh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1021/syn/rh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1023/syn/rh.uf.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2/trctrain/hcp/mgh_1024/syn/rh.uf.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 17 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 8971 total streamlines (min/mean/max length: 44/72/96) Processing pathway 42 of 42... INFO: Have 8923 non-truncated streamlines (min/mean/max length: 44/72/96) Computing path histograms INFO: Total streamline volume is 8779 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 19 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0795367 INFO: Points where local peaks in curvature occur are 47 96 44 (curv = 0.0891536) 45 92 42 (curv = 0.102992) 40 80 40 (curv = 0.233043) 36 82 34 (curv = 0.202087) INFO: Intermediate dominant points are 53 118 38 48 110 42 47 97 44 45 92 42 40 80 40 36 84 32 37 92 28 INFO: Final dominant points are 53 118 38 48 104 43 47 96 44 45 92 42 40 80 40 37 87 30 37 92 28 WARN: Defaulting to equidistant control points INFO: Selected control points are 53 118 38 48 111 42 47 99 44 44 91 42 41 83 41 36 82 34 37 92 28 INFO: Distances between consecutive points are 9 12 9 9 9 12 INFO: Selected control points in test subject's space are 65 116 13 60 108 20 59 95 26 56 88 25 54 80 26 48 78 18 50 87 9 INFO: Distances between consecutive points in test subject's space are 12 14 8 8 10 13 WARN: Could not find satisfactory control point fit - try 1 Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0995509 INFO: Points where local peaks in curvature occur are 49 100 46 (curv = 0.291265) 45 92 42 (curv = 0.109684) 40 82 40 (curv = 0.145437) 37 80 36 (curv = 0.2871) INFO: Intermediate dominant points are 53 119 37 48 111 42 49 100 46 45 92 42 41 83 41 37 80 36 37 91 27 INFO: Final dominant points are 53 119 37 48 105 44 49 100 46 45 92 42 40 82 40 37 80 36 37 91 27 INFO: Selected control points are 53 119 37 47 106 44 49 100 46 45 92 43 40 82 41 36 80 36 37 91 27 INFO: Distances between consecutive points are 16 7 9 11 7 14 INFO: Selected control points in test subject's space are 65 117 11 59 103 24 61 97 28 57 89 26 52 79 26 48 76 20 50 85 8 INFO: Distances between consecutive points in test subject's space are 20 7 9 11 8 15 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.uf_avg16_syn_bbr_cpts_7.nii.gz Done in 3.333 sec. dmri_train done #------------------------------------- trac-preproc finished without error at Wed Jul 12 17:40:13 EDT 2023 New invocation of trac-all Wed Jul 12 23:30:03 EDT 2023 /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/trac-all -path -c trc_cm/dmrirc.bids_cm.banda Subject sub-BANDA001 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Actual FREESURFER_HOME /autofs/vast/freesurfer/centos7_x86_64/7.3.2 build-stamp.txt: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 erd37 launchpad.nmr.mgh.harvard.edu Linux launchpad.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 131070 memorylocked unlimited maxproc 32768 maxlocks unlimited maxsignal 127902 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 32778568 1686892 3529496 1656644 27562180 29033320 Swap: 67108856 2056 67106800 ######################################## Program versions: trac-all 7.3.2 mri_convert --all-info ProgramName: mri_convert ProgramArguments: mri_convert --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/13-03:30:04-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: launchpad.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 FLIRT version 6.0 bbregister 7.3.2 mri_cvs_register 7.3.2 ProgramName: dmri_motion ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_motion --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/13-03:30:04-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: launchpad.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_train ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_train --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/13-03:30:04-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: launchpad.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_paths ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_paths --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/13-03:30:04-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: launchpad.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_pathstats ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/13-03:30:04-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: launchpad.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_mergepaths ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_mergepaths --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/13-03:30:04-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: launchpad.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_group ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_group --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/13-03:30:04-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: launchpad.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /usr/local/freesurfer/7.3.2/ Previous: /usr/local/freesurfer/7.3.2 New invocation of trac-paths erd37 compute-0-3.nmr.mgh.harvard.edu Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 7340032 kbytes descriptors 32768 memorylocked unlimited maxproc 127904 maxlocks unlimited maxsignal 127904 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 32778656 1089760 12882672 50136 18806224 31214628 Swap: 67108860 0 67108860 #------------------------------------- /usr/local/freesurfer/7.3.2//bin/trac-paths #------------------------------------- #@# DWI set selection Wed Jul 12 23:30:15 EDT 2023 ln -sf dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/data.nii.gz ln -sf dwi.bvecs /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvecs ln -sf dwi.bvals /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvals #------------------------------------- #@# Path reconstruction Wed Jul 12 23:30:15 EDT 2023 rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/mcp_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr /usr/local/freesurfer/7.3.2//bin/dmri_paths --outdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/mcp_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr --dwi /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/data.nii.gz --grad /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvecs --bval /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvals --mask /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_end1_dil.nii.gz 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/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_end1_dil.nii.gz --roi2 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_end2_dil.nii.gz 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/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_end2_dil.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z --init /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/acomm_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.bodyc_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.bodyp_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.bodypf_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.bodypm_avg16_syn_bbr_cpts_7.txt 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--nb 200 --ns 7500 --nu 0 --nk 5 --sdp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/acomm_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.bodyc_avg16_syn_bbr_cpts_8_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.bodyp_avg16_syn_bbr_cpts_9_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.bodypf_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.bodypm_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.bodyt_avg16_syn_bbr_cpts_12_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.rostrum_avg16_syn_bbr_cpts_5_std.txt 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/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.or_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.or_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.slf1_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.slf1_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.slf2_avg16_syn_bbr_cpts_8_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.slf2_avg16_syn_bbr_cpts_8_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.slf3_avg16_syn_bbr_cpts_6_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.slf3_avg16_syn_bbr_cpts_6_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.uf_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.uf_avg16_syn_bbr_cpts_7_std.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_paths --outdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/mcp_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr --dwi /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/data.nii.gz --grad /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvecs --bval /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvals --mask /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_end1_dil.nii.gz 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/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_end1_dil.nii.gz --roi2 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_end2_dil.nii.gz 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/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.ilf_avg16_syn_bbr_cpts_8_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.mlf_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.mlf_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.or_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.or_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.slf1_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.slf1_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.slf2_avg16_syn_bbr_cpts_8_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.slf2_avg16_syn_bbr_cpts_8_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.slf3_avg16_syn_bbr_cpts_6_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.slf3_avg16_syn_bbr_cpts_6_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.uf_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.uf_avg16_syn_bbr_cpts_7_std.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Output directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/mcp_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr DWIs: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/data.nii.gz Gradients: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvecs B-values: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvals Mask: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz BEDPOST directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/acomm_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.bodyc_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.bodyp_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.bodypf_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.bodypm_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.bodyt_avg16_syn_bbr_cpts_12.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.rostrum_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.splenium_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/mcp_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.af_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.af_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.ar_avg16_syn_bbr_cpts_4.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.ar_avg16_syn_bbr_cpts_4.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.atr_avg16_syn_bbr_cpts_4.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_4.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cbd_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.cbd_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.cbv_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.emc_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.emc_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.fat_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.fat_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.fx_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.ilf_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.ilf_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.mlf_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.mlf_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.or_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.or_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.slf1_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.slf1_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.slf2_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.slf2_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.slf3_avg16_syn_bbr_cpts_6.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.slf3_avg16_syn_bbr_cpts_6.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.uf_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.uf_avg16_syn_bbr_cpts_7.txt End ROI 1: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_end1_dil.nii.gz End ROI 2: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_end2_dil.nii.gz Neighbor aseg prior: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all Neighbor aseg label ID list: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all Local aseg label ID list: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz DWI-to-atlas affine registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn.lta DWI-to-atlas nonlinear registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z Number of burn-in samples: 200 Number of post-burn-in samples: 7500 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/acomm_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.bodyc_avg16_syn_bbr_cpts_8_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.bodyp_avg16_syn_bbr_cpts_9_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.bodypf_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.bodypm_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.bodyt_avg16_syn_bbr_cpts_12_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.rostrum_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.splenium_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/mcp_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.af_avg16_syn_bbr_cpts_9_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.af_avg16_syn_bbr_cpts_9_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.ar_avg16_syn_bbr_cpts_4_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.ar_avg16_syn_bbr_cpts_4_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.atr_avg16_syn_bbr_cpts_4_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_4_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cbd_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.cbd_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.cbv_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.emc_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.emc_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.fat_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.fat_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.fx_avg16_syn_bbr_cpts_9_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_9_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.ilf_avg16_syn_bbr_cpts_8_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.ilf_avg16_syn_bbr_cpts_8_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.mlf_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.mlf_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.or_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.or_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.slf1_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.slf1_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.slf2_avg16_syn_bbr_cpts_8_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.slf2_avg16_syn_bbr_cpts_8_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.slf3_avg16_syn_bbr_cpts_6_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.slf3_avg16_syn_bbr_cpts_6_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.uf_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.uf_avg16_syn_bbr_cpts_7_std.txt Loading DWIs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/data.nii.gz Loading mask from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri.bedpostX Loading b-values from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvals Loading gradients from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvecs INFO: Found 28 baseline images (b = 5) out of a total of 398 frames INFO: Found 482157 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_end1_dil.nii.gz Loading affine registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn.lta LTA registration format detected FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -3.375, ref det = -3.375 Loading non-linear registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Reading morph inverse Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.x.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.y.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.z.mgz Loading segmentation map from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/acomm_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/acomm_avg16_syn_bbr_cpts_7_std.txt Processing pathway 1 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr Done in 1135.15 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.bodyc_avg16_syn_bbr_cpts_8.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.bodyc_avg16_syn_bbr_cpts_8_std.txt Processing pathway 2 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr Done in 1282.8 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.bodyp_avg16_syn_bbr_cpts_9.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.bodyp_avg16_syn_bbr_cpts_9_std.txt Processing pathway 3 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr Done in 1421.89 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.bodypf_avg16_syn_bbr_cpts_7.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.bodypf_avg16_syn_bbr_cpts_7_std.txt Processing pathway 4 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Success after 2 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr Done in 1045.88 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.bodypm_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.bodypm_avg16_syn_bbr_cpts_7_std.txt Processing pathway 5 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr Done in 1011.51 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.bodyt_avg16_syn_bbr_cpts_12.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.bodyt_avg16_syn_bbr_cpts_12_std.txt Processing pathway 6 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 10 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr Done in 2287.57 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_5.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_5_std.txt Processing pathway 7 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr Done in 696.076 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.rostrum_avg16_syn_bbr_cpts_5.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.rostrum_avg16_syn_bbr_cpts_5_std.txt Processing pathway 8 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Success after 3 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr Done in 623.912 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.splenium_avg16_syn_bbr_cpts_7.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/cc.splenium_avg16_syn_bbr_cpts_7_std.txt Processing pathway 9 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr Done in 1335.23 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/mcp_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/mcp_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/mcp_avg16_syn_bbr_cpts_7_std.txt Processing pathway 10 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/mcp_avg16_syn_bbr Done in 1479.71 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.af_avg16_syn_bbr_cpts_9.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.af_avg16_syn_bbr_cpts_9_std.txt Processing pathway 11 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr Done in 1833.65 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.af_avg16_syn_bbr_cpts_9.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.af_avg16_syn_bbr_cpts_9_std.txt Processing pathway 12 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr Done in 1954.67 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.ar_avg16_syn_bbr_cpts_4.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.ar_avg16_syn_bbr_cpts_4_std.txt Processing pathway 13 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr Done in 313.54 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.ar_avg16_syn_bbr_cpts_4.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.ar_avg16_syn_bbr_cpts_4_std.txt Processing pathway 14 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 3 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr Done in 367.981 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.atr_avg16_syn_bbr_cpts_4.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.atr_avg16_syn_bbr_cpts_4_std.txt Processing pathway 15 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr Done in 467.032 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_4.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_4_std.txt Processing pathway 16 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr Done in 513.049 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cbd_avg16_syn_bbr_cpts_7.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cbd_avg16_syn_bbr_cpts_7_std.txt Processing pathway 17 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr Done in 1083.32 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.cbd_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.cbd_avg16_syn_bbr_cpts_7_std.txt Processing pathway 18 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 2 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr Done in 1098.76 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_5.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_5_std.txt Processing pathway 19 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr Done in 506.151 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.cbv_avg16_syn_bbr_cpts_5.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.cbv_avg16_syn_bbr_cpts_5_std.txt Processing pathway 20 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 3 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr Done in 546.421 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7_std.txt Processing pathway 21 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr Done in 1507.12 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7_std.txt Processing pathway 22 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr Done in 1514.95 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.emc_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.emc_avg16_syn_bbr_cpts_7_std.txt Processing pathway 23 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Success after 6 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr Done in 966.913 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.emc_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.emc_avg16_syn_bbr_cpts_7_std.txt Processing pathway 24 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Reverting to original control points Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr Done in 1028.29 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.fat_avg16_syn_bbr_cpts_5.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.fat_avg16_syn_bbr_cpts_5_std.txt Processing pathway 25 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr Done in 593.737 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.fat_avg16_syn_bbr_cpts_5.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.fat_avg16_syn_bbr_cpts_5_std.txt Processing pathway 26 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr Done in 581.531 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.fx_avg16_syn_bbr_cpts_9.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.fx_avg16_syn_bbr_cpts_9_std.txt Processing pathway 27 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Success after 5 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr Done in 1621.51 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_9.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_9_std.txt Processing pathway 28 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr Done in 1669.64 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.ilf_avg16_syn_bbr_cpts_8.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.ilf_avg16_syn_bbr_cpts_8_std.txt Processing pathway 29 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr Done in 1121.08 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.ilf_avg16_syn_bbr_cpts_8.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.ilf_avg16_syn_bbr_cpts_8_std.txt Processing pathway 30 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr Done in 1067.94 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.mlf_avg16_syn_bbr_cpts_7.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.mlf_avg16_syn_bbr_cpts_7_std.txt Processing pathway 31 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr Done in 1034 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.mlf_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.mlf_avg16_syn_bbr_cpts_7_std.txt Processing pathway 32 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 4 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr Done in 938.336 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.or_avg16_syn_bbr_cpts_5.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.or_avg16_syn_bbr_cpts_5_std.txt Processing pathway 33 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr Done in 685.084 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.or_avg16_syn_bbr_cpts_5.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.or_avg16_syn_bbr_cpts_5_std.txt Processing pathway 34 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr Done in 723.285 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.slf1_avg16_syn_bbr_cpts_7.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.slf1_avg16_syn_bbr_cpts_7_std.txt Processing pathway 35 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 4 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr Done in 1250.21 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.slf1_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.slf1_avg16_syn_bbr_cpts_7_std.txt Processing pathway 36 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 2 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr Done in 1275.54 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.slf2_avg16_syn_bbr_cpts_8.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.slf2_avg16_syn_bbr_cpts_8_std.txt Processing pathway 37 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr Done in 1700.96 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.slf2_avg16_syn_bbr_cpts_8.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.slf2_avg16_syn_bbr_cpts_8_std.txt Processing pathway 38 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 6 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 6 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 6 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 6 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 6 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 6 INFO: Attempting to perturb control points INFO: Success after 6 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr Done in 1620.83 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.slf3_avg16_syn_bbr_cpts_6.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.slf3_avg16_syn_bbr_cpts_6_std.txt Processing pathway 39 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr Done in 875.148 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.slf3_avg16_syn_bbr_cpts_6.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.slf3_avg16_syn_bbr_cpts_6_std.txt Processing pathway 40 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr Done in 949.518 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.uf_avg16_syn_bbr_cpts_7.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.uf_avg16_syn_bbr_cpts_7_std.txt Processing pathway 41 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr Done in 1002.25 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.uf_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.uf_avg16_syn_bbr_cpts_7_std.txt Processing pathway 42 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 2 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr Done in 954.15 sec. dmri_paths done fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/path.pd.nii.gz -thr 52.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/path.pd.nii.gz -thr 42.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/path.pd.nii.gz -thr 64.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/path.pd.nii.gz -thr 30.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/path.pd.nii.gz -thr 21.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/path.pd.nii.gz -thr 22.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/path.pd.nii.gz -thr 30.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/path.pd.nii.gz -thr 25.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/path.pd.nii.gz -thr 35.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/mcp_avg16_syn_bbr/path.pd.nii.gz -thr 22.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/mcp_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/mcp_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/path.pd.nii.gz -thr 33.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/path.pd.nii.gz -thr 28.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/path.pd.nii.gz -thr 58.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/path.pd.nii.gz -thr 67.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/path.pd.nii.gz -thr 65.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/path.pd.nii.gz -thr 58.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/path.pd.nii.gz -thr 183.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/path.pd.nii.gz -thr 154.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/path.pd.nii.gz -thr 82.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/path.pd.nii.gz -thr 56.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/path.pd.nii.gz -thr 254.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/path.pd.nii.gz -thr 297.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/path.pd.nii.gz -thr 51.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/path.pd.nii.gz -thr 84.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/path.pd.nii.gz -thr 36.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/path.pd.nii.gz -thr 60.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/path.pd.nii.gz -thr 45.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/path.pd.nii.gz -thr 66.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/path.pd.nii.gz -thr 31.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/path.pd.nii.gz -thr 26.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/path.pd.nii.gz -thr 47.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.nii.gz rm -rf 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/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.nii.gz New invocation of trac-preproc erd37 compute-0-3.nmr.mgh.harvard.edu Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 7340032 kbytes descriptors 32768 memorylocked unlimited maxproc 127904 maxlocks unlimited maxsignal 127904 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 32778656 3231496 7113828 50036 22433332 29072980 Swap: 67108860 21512 67087348 #------------------------------------- /usr/local/freesurfer/7.3.2//bin/trac-preproc #------------------------------------- #@# Priors Thu Jul 13 12:21:07 EDT 2023 /usr/local/freesurfer/7.3.2//bin/dmri_train --outdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn --out lh.cst_avg16_syn_bbr rh.cst_avg16_syn_bbr --slist /scratch/19738366/tmp.w5RF6Q.16.sub-BANDA001.txt --trk syn/lh.cst.bbr.prep.trk syn/rh.cst.bbr.prep.trk --seg syn/aparc+aseg+thalnuc.nii.gz --cmask syn/cortex+2mm+crblm.nii.gz --lmask 16 16 --bmask /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg_mask.nii.gz --fa /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz --cptdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff --regnl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z --refnl /usr/local/freesurfer/7.3.2//trctrain/hcp/MGH35_HCP_FA_template.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2diff.lta --ncpts 7 7 --xstr --trunc --aprior 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_train --outdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn --out lh.cst_avg16_syn_bbr rh.cst_avg16_syn_bbr --slist /scratch/19738366/tmp.w5RF6Q.16.sub-BANDA001.txt --trk syn/lh.cst.bbr.prep.trk syn/rh.cst.bbr.prep.trk --seg syn/aparc+aseg+thalnuc.nii.gz --cmask syn/cortex+2mm+crblm.nii.gz --lmask 16 16 --bmask /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg_mask.nii.gz --fa /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz --cptdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff --regnl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z --refnl /usr/local/freesurfer/7.3.2//trctrain/hcp/MGH35_HCP_FA_template.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2diff.lta --ncpts 7 7 --xstr --trunc --aprior sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Output directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn Output directory in test subject's space: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff Training subject directory list: /scratch/19738366/tmp.w5RF6Q.16.sub-BANDA001.txt Location of streamline files relative to base: syn/lh.cst.bbr.prep.trk syn/rh.cst.bbr.prep.trk Location of cortex masks relative to base: syn/cortex+2mm+crblm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 16 Location of aparc+aseg's relative to base: syn/aparc+aseg+thalnuc.nii.gz Brain mask for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg_mask.nii.gz FA map for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz Affine registration from atlas to base for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2diff.lta Nonlinear registration from atlas to base for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z Nonlinear registration source reference for output subject: /autofs/vast/freesurfer/centos7_x86_64/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz Number of control points for initial spline: 7 7 Exclude previously chosen center streamlines: 1 Use truncated streamlines: 1 Compute priors on underlying anatomy: 1 Compute priors on shape: 0 Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1001/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1001/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1006/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1006/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1007/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1007/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1008/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1008/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1009/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1009/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1010/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1010/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1011/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1011/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1012/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1012/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1013/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1013/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1015/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1015/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1016/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1016/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1017/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1017/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1019/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1019/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1021/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1021/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1023/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1023/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1024/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1024/syn/cortex+2mm+crblm.nii.gz Loading brain mask of output subject from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg_mask.nii.gz Loading FA map of output subject from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz Loading non-linear registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Reading morph inverse Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.x.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.y.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.z.mgz Loading non-linear registration source for output subject from /autofs/vast/freesurfer/centos7_x86_64/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz Loading affine registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2diff.lta LTA registration format detected FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -3.375, ref det = -3.375 Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1001/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1006/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1007/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1008/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1009/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1010/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1011/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1012/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1013/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1015/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1016/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1017/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1019/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1021/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1023/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1024/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 1 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 18654 total streamlines (min/mean/max length: 58/80/94) Loading list of excluded streamlines from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_cpts_all.bad.txt INFO: Found 1 streamlines to be excluded Processing pathway 1 of 2... INFO: Have 17043 non-truncated streamlines (min/mean/max length: 58/79/94) Computing path histograms INFO: Total streamline volume is 15253 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 23 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0705664 INFO: Points where local peaks in curvature occur are 69 81 78 (curv = 0.165236) 70 74 77 (curv = 0.388342) 76 75 66 (curv = 0.134653) 71 74 46 (curv = 0.123472) 62 69 34 (curv = 0.111669) INFO: Intermediate dominant points are 68 83 86 70 74 77 76 75 63 71 74 46 62 69 34 62 63 24 60 55 11 INFO: Final dominant points are 68 83 86 70 74 77 72 75 54 71 74 46 62 69 34 62 61 19 60 55 11 INFO: Selected control points are 68 83 86 72 76 75 74 75 55 70 74 46 62 68 34 62 61 19 60 55 11 INFO: Distances between consecutive points are 14 20 10 16 17 10 INFO: Selected control points in test subject's space are 79 85 71 83 75 62 85 73 41 80 70 32 74 61 22 74 51 7 72 45 3 INFO: Distances between consecutive points in test subject's space are 14 21 11 15 18 7 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.nii.gz Done in 9.432 sec. Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1001/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1006/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1007/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1008/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1009/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1010/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1011/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1012/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1013/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1015/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1016/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1017/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1019/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1021/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1023/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1024/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 43 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 14426 total streamlines (min/mean/max length: 64/80/97) Loading list of excluded streamlines from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_cpts_all.bad.txt INFO: Found 1 streamlines to be excluded Processing pathway 2 of 2... INFO: Have 13012 non-truncated streamlines (min/mean/max length: 64/79/97) Computing path histograms INFO: Total streamline volume is 13420 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 23 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0460753 INFO: Points where local peaks in curvature occur are 48 73 79 (curv = 0.0515488) 43 74 68 (curv = 0.0652723) 43 75 61 (curv = 0.0784367) 45 73 55 (curv = 0.0603029) 50 73 40 (curv = 0.0607614) 54 69 36 (curv = 0.0580468) 56 68 31 (curv = 0.121945) 55 65 26 (curv = 0.0720297) INFO: Intermediate dominant points are 53 69 87 48 73 79 43 75 61 50 73 40 56 68 31 57 63 23 58 56 10 INFO: Final dominant points are 53 69 87 48 73 79 43 75 61 50 73 40 56 68 31 58 59 17 58 56 10 INFO: Selected control points are 53 69 87 48 73 78 43 74 61 50 72 41 56 67 31 57 60 18 58 56 10 INFO: Distances between consecutive points are 11 18 21 13 15 9 INFO: Selected control points in test subject's space are 62 71 75 58 73 65 54 73 47 62 67 28 68 60 18 69 51 7 70 46 2 INFO: Distances between consecutive points in test subject's space are 11 18 21 14 14 7 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7.nii.gz Done in 8.232 sec. dmri_train done #------------------------------------- trac-preproc finished without error at Thu Jul 13 12:21:35 EDT 2023 /usr/local/freesurfer/7.3.2//bin/dmri_paths --outdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr --dwi /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/data.nii.gz --grad /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvecs --bval /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvals --mask /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_end1_dil.nii.gz --roi2 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_end2_dil.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z --init /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7.txt --nprior /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all --lprior /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all --seg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7_std.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_paths --outdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr --dwi /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/data.nii.gz --grad /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvecs --bval /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvals --mask /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_end1_dil.nii.gz --roi2 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_end2_dil.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z --init /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7.txt --nprior /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all --lprior /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all --seg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7_std.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Output directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr DWIs: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/data.nii.gz Gradients: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvecs B-values: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvals Mask: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz BEDPOST directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7.txt End ROI 1: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_end1_dil.nii.gz End ROI 2: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_end2_dil.nii.gz Neighbor aseg prior: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all Neighbor aseg label ID list: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all Local aseg label ID list: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz DWI-to-atlas affine registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn.lta DWI-to-atlas nonlinear registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z Number of burn-in samples: 200 Number of post-burn-in samples: 7500 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7_std.txt Loading DWIs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/data.nii.gz Loading mask from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri.bedpostX Loading b-values from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvals Loading gradients from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvecs INFO: Found 28 baseline images (b = 5) out of a total of 398 frames INFO: Found 482157 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz Loading affine registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn.lta LTA registration format detected FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -3.375, ref det = -3.375 Loading non-linear registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Reading morph inverse Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.x.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.y.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.z.mgz Loading segmentation map from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7_std.txt Processing pathway 1 of 2... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr Done in 1573.25 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7_std.txt Processing pathway 2 of 2... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr Done in 1471.73 sec. dmri_paths done fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/path.pd.nii.gz -thr 52.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/path.pd.nii.gz -thr 42.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/path.pd.nii.gz -thr 64.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/path.pd.nii.gz -thr 30.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/path.pd.nii.gz -thr 21.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/path.pd.nii.gz -thr 22.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/path.pd.nii.gz -thr 30.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/path.pd.nii.gz -thr 25.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/path.pd.nii.gz -thr 35.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/mcp_avg16_syn_bbr/path.pd.nii.gz -thr 22.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/mcp_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/mcp_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/path.pd.nii.gz -thr 33.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/path.pd.nii.gz -thr 28.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/path.pd.nii.gz -thr 58.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/path.pd.nii.gz -thr 67.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/path.pd.nii.gz -thr 65.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/path.pd.nii.gz -thr 58.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/path.pd.nii.gz -thr 183.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/path.pd.nii.gz -thr 154.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/path.pd.nii.gz -thr 82.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/path.pd.nii.gz -thr 56.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/path.pd.nii.gz -thr 278.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/path.pd.nii.gz -thr 33.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/path.pd.nii.gz -thr 51.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/path.pd.nii.gz -thr 84.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/path.pd.nii.gz -thr 36.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/path.pd.nii.gz -thr 60.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/path.pd.nii.gz -thr 45.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/path.pd.nii.gz -thr 66.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/path.pd.nii.gz -thr 31.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/path.pd.nii.gz -thr 26.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/path.pd.nii.gz -thr 47.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/path.pd.nii.gz -thr 56.8000000 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/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/path.pd.nii.gz -thr 63.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/path.pd.nii.gz -thr 66.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.nii.gz New invocation of trac-preproc erd37 compute-0-3.nmr.mgh.harvard.edu Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 7340032 kbytes descriptors 32768 memorylocked unlimited maxproc 127904 maxlocks unlimited maxsignal 127904 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 32778656 1086880 7308316 50036 24383460 31217608 Swap: 67108860 21512 67087348 #------------------------------------- /usr/local/freesurfer/7.3.2//bin/trac-preproc #------------------------------------- #@# Priors Thu Jul 13 13:16:49 EDT 2023 /usr/local/freesurfer/7.3.2//bin/dmri_train --outdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn --out lh.cst_avg16_syn_bbr --slist /scratch/19738366/tmp.KXpdRq.16.sub-BANDA001.txt --trk syn/lh.cst.bbr.prep.trk --seg syn/aparc+aseg+thalnuc.nii.gz --cmask syn/cortex+2mm+crblm.nii.gz --lmask 16 --bmask /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg_mask.nii.gz --fa /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz --cptdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff --regnl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z --refnl /usr/local/freesurfer/7.3.2//trctrain/hcp/MGH35_HCP_FA_template.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2diff.lta --ncpts 7 --xstr --trunc --aprior 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_train --outdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn --out lh.cst_avg16_syn_bbr --slist /scratch/19738366/tmp.KXpdRq.16.sub-BANDA001.txt --trk syn/lh.cst.bbr.prep.trk --seg syn/aparc+aseg+thalnuc.nii.gz --cmask syn/cortex+2mm+crblm.nii.gz --lmask 16 --bmask /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg_mask.nii.gz --fa /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz --cptdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff --regnl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z --refnl /usr/local/freesurfer/7.3.2//trctrain/hcp/MGH35_HCP_FA_template.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2diff.lta --ncpts 7 --xstr --trunc --aprior sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Output directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn Output directory in test subject's space: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff Training subject directory list: /scratch/19738366/tmp.KXpdRq.16.sub-BANDA001.txt Location of streamline files relative to base: syn/lh.cst.bbr.prep.trk Location of cortex masks relative to base: syn/cortex+2mm+crblm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 Location of aparc+aseg's relative to base: syn/aparc+aseg+thalnuc.nii.gz Brain mask for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg_mask.nii.gz FA map for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz Affine registration from atlas to base for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2diff.lta Nonlinear registration from atlas to base for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z Nonlinear registration source reference for output subject: /autofs/vast/freesurfer/centos7_x86_64/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz Number of control points for initial spline: 7 Exclude previously chosen center streamlines: 1 Use truncated streamlines: 1 Compute priors on underlying anatomy: 1 Compute priors on shape: 0 Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1001/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1001/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1006/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1006/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1007/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1007/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1008/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1008/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1009/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1009/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1010/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1010/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1011/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1011/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1012/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1012/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1013/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1013/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1015/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1015/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1016/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1016/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1017/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1017/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1019/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1019/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1021/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1021/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1023/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1023/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1024/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1024/syn/cortex+2mm+crblm.nii.gz Loading brain mask of output subject from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg_mask.nii.gz Loading FA map of output subject from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz Loading non-linear registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Reading morph inverse Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.x.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.y.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.z.mgz Loading non-linear registration source for output subject from /autofs/vast/freesurfer/centos7_x86_64/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz Loading affine registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2diff.lta LTA registration format detected FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -3.375, ref det = -3.375 Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1001/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1006/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1007/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1008/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1009/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1010/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1011/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1012/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1013/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1015/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1016/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1017/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1019/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1021/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1023/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1024/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 1 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 18654 total streamlines (min/mean/max length: 58/80/94) Loading list of excluded streamlines from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_cpts_all.bad.txt INFO: Found 2 streamlines to be excluded Processing pathway 1 of 1... INFO: Have 17043 non-truncated streamlines (min/mean/max length: 58/79/94) Computing path histograms INFO: Total streamline volume is 15253 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 23 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0589787 INFO: Points where local peaks in curvature occur are 73 74 77 (curv = 0.124922) 75 76 63 (curv = 0.135137) 70 75 45 (curv = 0.166253) 64 68 34 (curv = 0.0717111) 63 66 26 (curv = 0.104837) INFO: Intermediate dominant points are 69 81 84 73 74 77 75 76 63 70 75 45 65 68 35 63 66 26 59 57 11 INFO: Final dominant points are 69 81 84 73 74 77 75 76 63 70 75 45 64 67 33 63 66 26 59 57 11 INFO: Selected control points are 69 81 84 72 74 76 75 76 63 70 74 45 64 67 34 63 66 26 59 57 11 INFO: Distances between consecutive points are 11 13 19 14 8 18 INFO: Selected control points in test subject's space are 80 82 69 83 73 64 86 74 50 81 70 31 76 60 22 75 58 12 71 47 3 INFO: Distances between consecutive points in test subject's space are 11 14 20 14 10 15 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.nii.gz Done in 9.407 sec. dmri_train done #------------------------------------- trac-preproc finished without error at Thu Jul 13 13:17:08 EDT 2023 /usr/local/freesurfer/7.3.2//bin/dmri_paths --outdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr --dwi /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/data.nii.gz --grad /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvecs --bval /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvals --mask /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz --roi2 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end2_dil.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z --init /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt --nprior /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all --lprior /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all --seg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7_std.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_paths --outdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr --dwi /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/data.nii.gz --grad /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvecs --bval /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvals --mask /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz --roi2 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end2_dil.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z --init /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt --nprior /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all --lprior /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all --seg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7_std.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Output directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr DWIs: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/data.nii.gz Gradients: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvecs B-values: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvals Mask: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz BEDPOST directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt End ROI 1: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz End ROI 2: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end2_dil.nii.gz Neighbor aseg prior: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all Neighbor aseg label ID list: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all Local aseg label ID list: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz DWI-to-atlas affine registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn.lta DWI-to-atlas nonlinear registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z Number of burn-in samples: 200 Number of post-burn-in samples: 7500 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7_std.txt Loading DWIs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/data.nii.gz Loading mask from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri.bedpostX Loading b-values from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvals Loading gradients from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvecs INFO: Found 28 baseline images (b = 5) out of a total of 398 frames INFO: Found 482157 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz Loading affine registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn.lta LTA registration format detected FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -3.375, ref det = -3.375 Loading non-linear registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Reading morph inverse Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.x.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.y.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.z.mgz Loading segmentation map from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7_std.txt Processing pathway 1 of 1... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr Done in 1716.35 sec. dmri_paths done fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/path.pd.nii.gz -thr 52.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/path.pd.nii.gz -thr 42.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/path.pd.nii.gz -thr 64.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/path.pd.nii.gz -thr 30.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/path.pd.nii.gz -thr 21.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/path.pd.nii.gz -thr 22.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/path.pd.nii.gz -thr 30.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/path.pd.nii.gz -thr 25.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/path.pd.nii.gz -thr 35.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/mcp_avg16_syn_bbr/path.pd.nii.gz -thr 22.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/mcp_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/mcp_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/path.pd.nii.gz -thr 33.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/path.pd.nii.gz -thr 28.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/path.pd.nii.gz -thr 58.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/path.pd.nii.gz -thr 67.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/path.pd.nii.gz -thr 65.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/path.pd.nii.gz -thr 58.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/path.pd.nii.gz -thr 183.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/path.pd.nii.gz -thr 154.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/path.pd.nii.gz -thr 82.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/path.pd.nii.gz -thr 56.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/path.pd.nii.gz -thr 262.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/path.pd.nii.gz -thr 33.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/path.pd.nii.gz -thr 51.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/path.pd.nii.gz -thr 84.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/path.pd.nii.gz -thr 36.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/path.pd.nii.gz -thr 60.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/path.pd.nii.gz -thr 45.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/path.pd.nii.gz -thr 66.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/path.pd.nii.gz -thr 31.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/path.pd.nii.gz -thr 26.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/path.pd.nii.gz -thr 47.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/path.pd.nii.gz -thr 56.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/path.pd.nii.gz -thr 44.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/path.pd.nii.gz -thr 49.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/tmp.nii.gz fslmaths 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/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/path.pd.nii.gz -thr 31.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/path.pd.nii.gz -thr 43.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/path.pd.nii.gz -thr 70.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/path.pd.nii.gz -thr 63.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/path.pd.nii.gz -thr 66.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.nii.gz New invocation of trac-preproc erd37 compute-0-3.nmr.mgh.harvard.edu Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 7340032 kbytes descriptors 32768 memorylocked unlimited maxproc 127904 maxlocks unlimited maxsignal 127904 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 32778656 1083184 7310148 50036 24385324 31221304 Swap: 67108860 21512 67087348 #------------------------------------- /usr/local/freesurfer/7.3.2//bin/trac-preproc #------------------------------------- #@# Priors Thu Jul 13 13:47:45 EDT 2023 /usr/local/freesurfer/7.3.2//bin/dmri_train --outdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn --out lh.cst_avg16_syn_bbr --slist /scratch/19738366/tmp.QMsNFt.16.sub-BANDA001.txt --trk syn/lh.cst.bbr.prep.trk --seg syn/aparc+aseg+thalnuc.nii.gz --cmask syn/cortex+2mm+crblm.nii.gz --lmask 16 --bmask /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg_mask.nii.gz --fa /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz --cptdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff --regnl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z --refnl /usr/local/freesurfer/7.3.2//trctrain/hcp/MGH35_HCP_FA_template.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2diff.lta --ncpts 7 --xstr --trunc --aprior 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_train --outdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn --out lh.cst_avg16_syn_bbr --slist /scratch/19738366/tmp.QMsNFt.16.sub-BANDA001.txt --trk syn/lh.cst.bbr.prep.trk --seg syn/aparc+aseg+thalnuc.nii.gz --cmask syn/cortex+2mm+crblm.nii.gz --lmask 16 --bmask /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg_mask.nii.gz --fa /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz --cptdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff --regnl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z --refnl /usr/local/freesurfer/7.3.2//trctrain/hcp/MGH35_HCP_FA_template.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2diff.lta --ncpts 7 --xstr --trunc --aprior sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Output directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn Output directory in test subject's space: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff Training subject directory list: /scratch/19738366/tmp.QMsNFt.16.sub-BANDA001.txt Location of streamline files relative to base: syn/lh.cst.bbr.prep.trk Location of cortex masks relative to base: syn/cortex+2mm+crblm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 Location of aparc+aseg's relative to base: syn/aparc+aseg+thalnuc.nii.gz Brain mask for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg_mask.nii.gz FA map for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz Affine registration from atlas to base for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2diff.lta Nonlinear registration from atlas to base for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z Nonlinear registration source reference for output subject: /autofs/vast/freesurfer/centos7_x86_64/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz Number of control points for initial spline: 7 Exclude previously chosen center streamlines: 1 Use truncated streamlines: 1 Compute priors on underlying anatomy: 1 Compute priors on shape: 0 Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1001/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1001/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1006/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1006/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1007/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1007/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1008/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1008/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1009/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1009/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1010/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1010/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1011/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1011/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1012/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1012/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1013/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1013/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1015/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1015/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1016/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1016/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1017/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1017/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1019/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1019/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1021/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1021/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1023/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1023/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1024/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1024/syn/cortex+2mm+crblm.nii.gz Loading brain mask of output subject from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg_mask.nii.gz Loading FA map of output subject from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz Loading non-linear registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Reading morph inverse Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.x.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.y.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.z.mgz Loading non-linear registration source for output subject from /autofs/vast/freesurfer/centos7_x86_64/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz Loading affine registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2diff.lta LTA registration format detected FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -3.375, ref det = -3.375 Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1001/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1006/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1007/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1008/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1009/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1010/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1011/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1012/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1013/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1015/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1016/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1017/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1019/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1021/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1023/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1024/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 1 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 18654 total streamlines (min/mean/max length: 58/80/94) Loading list of excluded streamlines from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_cpts_all.bad.txt INFO: Found 3 streamlines to be excluded Processing pathway 1 of 1... INFO: Have 17043 non-truncated streamlines (min/mean/max length: 58/79/94) Computing path histograms INFO: Total streamline volume is 15253 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 23 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0535772 INFO: Points where local peaks in curvature occur are 70 75 79 (curv = 0.29595) 77 79 65 (curv = 0.135462) 69 75 45 (curv = 0.0580705) 64 68 36 (curv = 0.0750734) INFO: Intermediate dominant points are 68 81 86 70 75 79 77 79 65 70 76 49 64 68 36 61 63 22 60 57 11 INFO: Final dominant points are 68 81 86 70 75 79 77 79 65 68 74 43 64 68 36 60 59 17 60 57 11 INFO: Selected control points are 68 81 86 70 76 78 76 79 65 68 74 44 64 69 35 60 60 18 60 57 11 INFO: Distances between consecutive points are 10 15 23 11 20 8 INFO: Selected control points in test subject's space are 79 83 72 81 76 65 87 78 52 78 70 31 76 63 23 72 50 7 72 47 2 INFO: Distances between consecutive points in test subject's space are 10 14 24 11 21 6 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.nii.gz Done in 9.297 sec. dmri_train done #------------------------------------- trac-preproc finished without error at Thu Jul 13 13:48:03 EDT 2023 /usr/local/freesurfer/7.3.2//bin/dmri_paths --outdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr --dwi /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/data.nii.gz --grad /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvecs --bval /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvals --mask /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz --roi2 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end2_dil.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z --init /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt --nprior /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all --lprior /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all --seg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7_std.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_paths --outdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr --dwi /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/data.nii.gz --grad /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvecs --bval /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvals --mask /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz --roi2 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end2_dil.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z --init /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt --nprior /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all --lprior /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all --seg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7_std.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Output directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr DWIs: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/data.nii.gz Gradients: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvecs B-values: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvals Mask: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz BEDPOST directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt End ROI 1: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz End ROI 2: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end2_dil.nii.gz Neighbor aseg prior: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all Neighbor aseg label ID list: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all Local aseg label ID list: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz DWI-to-atlas affine registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn.lta DWI-to-atlas nonlinear registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z Number of burn-in samples: 200 Number of post-burn-in samples: 7500 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7_std.txt Loading DWIs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/data.nii.gz Loading mask from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri.bedpostX Loading b-values from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvals Loading gradients from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvecs INFO: Found 28 baseline images (b = 5) out of a total of 398 frames INFO: Found 482157 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz Loading affine registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn.lta LTA registration format detected FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -3.375, ref det = -3.375 Loading non-linear registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Reading morph inverse Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.x.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.y.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.z.mgz Loading segmentation map from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7_std.txt Processing pathway 1 of 1... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr Done in 1416.02 sec. dmri_paths done fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/path.pd.nii.gz -thr 52.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/path.pd.nii.gz -thr 42.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/path.pd.nii.gz -thr 64.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/path.pd.nii.gz -thr 30.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/path.pd.nii.gz -thr 21.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/path.pd.nii.gz -thr 22.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/path.pd.nii.gz -thr 30.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/path.pd.nii.gz -thr 25.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/path.pd.nii.gz -thr 35.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/mcp_avg16_syn_bbr/path.pd.nii.gz -thr 22.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/mcp_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/mcp_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/path.pd.nii.gz -thr 33.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/path.pd.nii.gz -thr 28.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/path.pd.nii.gz -thr 58.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/path.pd.nii.gz -thr 67.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/path.pd.nii.gz -thr 65.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/path.pd.nii.gz -thr 58.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/path.pd.nii.gz -thr 183.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/path.pd.nii.gz -thr 154.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/path.pd.nii.gz -thr 82.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/path.pd.nii.gz -thr 56.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/path.pd.nii.gz -thr 205.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/path.pd.nii.gz -thr 33.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/path.pd.nii.gz -thr 51.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/path.pd.nii.gz -thr 84.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/path.pd.nii.gz -thr 36.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/path.pd.nii.gz -thr 60.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/path.pd.nii.gz -thr 45.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/path.pd.nii.gz -thr 66.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/path.pd.nii.gz -thr 31.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/path.pd.nii.gz -thr 26.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/path.pd.nii.gz -thr 47.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/path.pd.nii.gz -thr 56.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/path.pd.nii.gz -thr 44.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/path.pd.nii.gz -thr 49.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/path.pd.nii.gz -thr 40.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/path.pd.nii.gz -thr 55.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/path.pd.nii.gz -thr 33.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/path.pd.nii.gz -thr 31.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/path.pd.nii.gz -thr 43.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/path.pd.nii.gz -thr 70.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/path.pd.nii.gz -thr 63.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/path.pd.nii.gz -thr 66.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.nii.gz New invocation of trac-preproc erd37 compute-0-3.nmr.mgh.harvard.edu Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 7340032 kbytes descriptors 32768 memorylocked unlimited maxproc 127904 maxlocks unlimited maxsignal 127904 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 32778656 1081040 7311096 50036 24386520 31223448 Swap: 67108860 21512 67087348 #------------------------------------- /usr/local/freesurfer/7.3.2//bin/trac-preproc #------------------------------------- #@# Priors Thu Jul 13 14:13:41 EDT 2023 /usr/local/freesurfer/7.3.2//bin/dmri_train --outdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn --out lh.cst_avg16_syn_bbr --slist /scratch/19738366/tmp.PF97Vl.16.sub-BANDA001.txt --trk syn/lh.cst.bbr.prep.trk --seg syn/aparc+aseg+thalnuc.nii.gz --cmask syn/cortex+2mm+crblm.nii.gz --lmask 16 --bmask /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg_mask.nii.gz --fa /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz --cptdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff --regnl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z --refnl /usr/local/freesurfer/7.3.2//trctrain/hcp/MGH35_HCP_FA_template.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2diff.lta --ncpts 7 --xstr --trunc --aprior 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_train --outdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn --out lh.cst_avg16_syn_bbr --slist /scratch/19738366/tmp.PF97Vl.16.sub-BANDA001.txt --trk syn/lh.cst.bbr.prep.trk --seg syn/aparc+aseg+thalnuc.nii.gz --cmask syn/cortex+2mm+crblm.nii.gz --lmask 16 --bmask /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg_mask.nii.gz --fa /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz --cptdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff --regnl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z --refnl /usr/local/freesurfer/7.3.2//trctrain/hcp/MGH35_HCP_FA_template.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2diff.lta --ncpts 7 --xstr --trunc --aprior sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Output directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn Output directory in test subject's space: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff Training subject directory list: /scratch/19738366/tmp.PF97Vl.16.sub-BANDA001.txt Location of streamline files relative to base: syn/lh.cst.bbr.prep.trk Location of cortex masks relative to base: syn/cortex+2mm+crblm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 Location of aparc+aseg's relative to base: syn/aparc+aseg+thalnuc.nii.gz Brain mask for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg_mask.nii.gz FA map for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz Affine registration from atlas to base for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2diff.lta Nonlinear registration from atlas to base for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z Nonlinear registration source reference for output subject: /autofs/vast/freesurfer/centos7_x86_64/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz Number of control points for initial spline: 7 Exclude previously chosen center streamlines: 1 Use truncated streamlines: 1 Compute priors on underlying anatomy: 1 Compute priors on shape: 0 Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1001/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1001/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1006/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1006/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1007/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1007/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1008/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1008/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1009/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1009/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1010/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1010/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1011/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1011/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1012/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1012/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1013/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1013/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1015/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1015/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1016/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1016/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1017/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1017/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1019/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1019/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1021/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1021/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1023/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1023/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1024/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1024/syn/cortex+2mm+crblm.nii.gz Loading brain mask of output subject from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg_mask.nii.gz Loading FA map of output subject from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz Loading non-linear registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Reading morph inverse Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.x.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.y.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.z.mgz Loading non-linear registration source for output subject from /autofs/vast/freesurfer/centos7_x86_64/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz Loading affine registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn2diff.lta LTA registration format detected FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -3.375, ref det = -3.375 Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1001/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1006/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1007/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1008/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1009/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1010/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1011/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1012/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1013/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1015/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1016/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1017/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1019/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1021/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1023/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1024/syn/lh.cst.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 1 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 18654 total streamlines (min/mean/max length: 58/80/94) Loading list of excluded streamlines from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_cpts_all.bad.txt INFO: Found 4 streamlines to be excluded Processing pathway 1 of 1... INFO: Have 17043 non-truncated streamlines (min/mean/max length: 58/79/94) Computing path histograms INFO: Total streamline volume is 15253 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 23 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0596064 INFO: Points where local peaks in curvature occur are 73 75 76 (curv = 0.179502) 72 76 73 (curv = 0.113404) 77 77 65 (curv = 0.177994) 73 75 58 (curv = 0.0622151) 70 74 45 (curv = 0.0629663) 64 68 37 (curv = 0.092648) 63 66 26 (curv = 0.0762474) INFO: Intermediate dominant points are 71 81 83 73 75 76 77 77 65 70 74 46 64 68 37 63 66 26 59 57 10 INFO: Final dominant points are 71 81 83 73 75 76 77 77 65 68 72 43 64 68 37 63 66 26 59 57 10 INFO: Selected control points are 71 81 83 73 75 76 75 77 64 69 73 43 64 68 36 63 66 27 59 57 10 INFO: Distances between consecutive points are 9 12 22 10 9 20 INFO: Selected control points in test subject's space are 82 82 69 84 74 64 86 75 51 80 68 30 76 62 24 75 58 13 71 47 2 INFO: Distances between consecutive points in test subject's space are 10 13 23 9 12 16 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.nii.gz Done in 9.316 sec. dmri_train done #------------------------------------- trac-preproc finished without error at Thu Jul 13 14:13:59 EDT 2023 /usr/local/freesurfer/7.3.2//bin/dmri_paths --outdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr --dwi /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/data.nii.gz --grad /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvecs --bval /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvals --mask /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz --roi2 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end2_dil.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z --init /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt --nprior /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all --lprior /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all --seg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7_std.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_paths --outdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr --dwi /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/data.nii.gz --grad /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvecs --bval /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvals --mask /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz --roi2 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end2_dil.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z --init /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt --nprior /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all --lprior /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all --seg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7_std.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Output directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr DWIs: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/data.nii.gz Gradients: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvecs B-values: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvals Mask: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz BEDPOST directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt End ROI 1: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz End ROI 2: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end2_dil.nii.gz Neighbor aseg prior: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all Neighbor aseg label ID list: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all Local aseg label ID list: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz DWI-to-atlas affine registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn.lta DWI-to-atlas nonlinear registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z Number of burn-in samples: 200 Number of post-burn-in samples: 7500 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7_std.txt Loading DWIs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/data.nii.gz Loading mask from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri.bedpostX Loading b-values from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvals Loading gradients from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/bvecs INFO: Found 28 baseline images (b = 5) out of a total of 398 frames INFO: Found 482157 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz Loading affine registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn.lta LTA registration format detected FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -3.375, ref det = -3.375 Loading non-linear registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Reading morph inverse Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.x.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.y.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.z.mgz Loading segmentation map from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7_std.txt Processing pathway 1 of 1... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr Done in 1477.28 sec. dmri_paths done fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/path.pd.nii.gz -thr 52.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/path.pd.nii.gz -thr 42.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/path.pd.nii.gz -thr 64.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/path.pd.nii.gz -thr 30.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/path.pd.nii.gz -thr 21.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/path.pd.nii.gz -thr 22.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/path.pd.nii.gz -thr 30.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/path.pd.nii.gz -thr 25.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/path.pd.nii.gz -thr 35.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/mcp_avg16_syn_bbr/path.pd.nii.gz -thr 22.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/mcp_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/mcp_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/path.pd.nii.gz -thr 33.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/path.pd.nii.gz -thr 28.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/path.pd.nii.gz -thr 58.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/path.pd.nii.gz -thr 67.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/path.pd.nii.gz -thr 65.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/path.pd.nii.gz -thr 58.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/path.pd.nii.gz -thr 183.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/path.pd.nii.gz -thr 154.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/path.pd.nii.gz -thr 82.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/path.pd.nii.gz -thr 56.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/path.pd.nii.gz -thr 30.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/path.pd.nii.gz -thr 33.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/path.pd.nii.gz -thr 51.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/path.pd.nii.gz -thr 84.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/path.pd.nii.gz -thr 36.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/path.pd.nii.gz -thr 60.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/path.pd.nii.gz -thr 45.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/path.pd.nii.gz -thr 66.6000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/path.pd.nii.gz -thr 31.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/path.pd.nii.gz -thr 26.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/path.pd.nii.gz -thr 47.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/path.pd.nii.gz -thr 56.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/path.pd.nii.gz -thr 44.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/path.pd.nii.gz -thr 49.8000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/path.pd.nii.gz -thr 40.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/path.pd.nii.gz -thr 55.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/path.pd.nii.gz -thr 33.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/path.pd.nii.gz -thr 31.4000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/path.pd.nii.gz -thr 43.2000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/path.pd.nii.gz -thr 70.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/path.pd.nii.gz -thr 63.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/path.pd.nii.gz -thr 66.0000000 /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.nii.gz /usr/local/freesurfer/7.3.2//bin/dmri_trk2trk --in /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/acomm.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyp.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodypf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodypm.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyt.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.genu.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.rostrum.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.splenium.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/mcp.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.af.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.af.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.ar.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.ar.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.atr.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.atr.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cbd.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cbd.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cbv.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cbv.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cst.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cst.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.emc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.emc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.fat.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.fat.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.fx.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.fx.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.ilf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.ilf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.mlf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.mlf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.or.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.or.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf1.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf1.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf2.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf2.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf3.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf3.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.uf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.uf.mean.trk --inref /usr/local/freesurfer/7.3.2//trctrain/hcp/MGH35_HCP_FA_template.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z --inv --smooth --outasc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/mcp_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/path.ref.txt --outref /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_trk2trk --in /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/acomm.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyp.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodypf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodypm.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyt.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.genu.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.rostrum.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.splenium.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/mcp.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.af.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.af.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.ar.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.ar.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.atr.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.atr.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cbd.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cbd.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cbv.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cbv.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cst.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cst.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.emc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.emc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.fat.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.fat.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.fx.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.fx.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.ilf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.ilf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.mlf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.mlf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.or.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.or.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf1.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf1.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf2.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf2.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf3.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf3.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.uf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.uf.mean.trk --inref /usr/local/freesurfer/7.3.2//trctrain/hcp/MGH35_HCP_FA_template.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z --inv --smooth --outasc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/mcp_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/path.ref.txt --outref /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input .trk files: /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/acomm.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyp.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodypf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodypm.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyt.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.genu.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.rostrum.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.splenium.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/mcp.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.af.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.af.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.ar.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.ar.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.atr.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.atr.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cbd.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cbd.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cbv.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cbv.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cst.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cst.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.emc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.emc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.fat.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.fat.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.fx.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.fx.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.ilf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.ilf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.mlf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.mlf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.or.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.or.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf1.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf1.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf2.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf2.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf3.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf3.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.uf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.uf.mean.trk Output text files: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/mcp_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/path.ref.txt Input reference: /autofs/vast/freesurfer/centos7_x86_64/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz Output reference: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit_FA.nii.gz Affine registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn.lta Nonlinear registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z Invert registration: 1 Fill gaps between points: 0 Smoothing streamlines Loading affine registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2syn.lta LTA registration format detected FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -3.375, ref det = -3.375 Loading non-linear registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Reading morph inverse Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.x.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.y.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.z.mgz Processing input file 1 of 42... 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Done in 0.024 sec. dmri_trk2trk done /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path acomm --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path acomm --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: acomm Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr... Done in 1.833 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 14:40:48 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.RpLiLk/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.RpLiLk/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.RpLiLk/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.RpLiLk/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.RpLiLk/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.RpLiLk/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.RpLiLk/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.RpLiLk/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.RpLiLk/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2166 values in range Counting number of voxels in first frame Found 2165 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2165 2165.000000 143986 1.503618 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 32.62 9.29 -9.65 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 2166 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2166 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2166 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.label 4026 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.label" number of vertices = 2897 total surface area = 1862 mm^2 total gray matter volume = 10107 mm^3 average cortical thickness = 3.845 mm +- 0.707 mm average integrated rectified mean curvature = 0.131 average integrated rectified Gaussian curvature = 0.035 folding index = 45 intrinsic curvature index = 3.9 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 14:41:12 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.IIMbwx/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.IIMbwx/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.IIMbwx/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.IIMbwx/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.IIMbwx/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.IIMbwx/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.IIMbwx/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.IIMbwx/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.IIMbwx/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2213 values in range Counting number of voxels in first frame Found 2212 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2212 2212.000000 147136 1.503371 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -32.76 9.42 -9.53 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 2213 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2213 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2213 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.label 4680 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.label" number of vertices = 3161 total surface area = 2100 mm^2 total gray matter volume = 10768 mm^3 average cortical thickness = 3.835 mm +- 0.686 mm average integrated rectified mean curvature = 0.128 average integrated rectified Gaussian curvature = 0.040 folding index = 50 intrinsic curvature index = 4.9 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path cc.bodyc --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path cc.bodyc --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: cc.bodyc Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr... Done in 0.92 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 14:41:36 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.Myj7ZR/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.Myj7ZR/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.Myj7ZR/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.Myj7ZR/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.Myj7ZR/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.Myj7ZR/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.Myj7ZR/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.Myj7ZR/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.Myj7ZR/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3269 values in range Counting number of voxels in first frame Found 3268 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3268 3268.000000 143986 2.269665 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 21.30 -30.52 62.01 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 3269 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3269 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3269 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label 16274 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label" number of vertices = 10373 total surface area = 6655 mm^2 total gray matter volume = 21726 mm^3 average cortical thickness = 2.953 mm +- 0.675 mm average integrated rectified mean curvature = 0.099 average integrated rectified Gaussian curvature = 0.018 folding index = 75 intrinsic curvature index = 7.5 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 14:41:58 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.gEfURF/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.gEfURF/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.gEfURF/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.gEfURF/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.gEfURF/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.gEfURF/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.gEfURF/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.gEfURF/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.gEfURF/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2786 values in range Counting number of voxels in first frame Found 2785 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2785 2785.000000 147136 1.892807 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -22.66 -36.98 64.70 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 2786 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2786 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2786 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label 14221 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label" number of vertices = 8405 total surface area = 5264 mm^2 total gray matter volume = 16261 mm^3 average cortical thickness = 2.895 mm +- 0.666 mm average integrated rectified mean curvature = 0.102 average integrated rectified Gaussian curvature = 0.019 folding index = 63 intrinsic curvature index = 6.5 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path cc.bodyp --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path cc.bodyp --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: cc.bodyp Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr... Done in 0.944 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 14:42:22 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.uu3eyC/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.uu3eyC/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.uu3eyC/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.uu3eyC/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.uu3eyC/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.uu3eyC/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.uu3eyC/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.uu3eyC/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.uu3eyC/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2154 values in range Counting number of voxels in first frame Found 2153 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2153 2153.000000 143986 1.495284 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 15.85 -60.78 43.02 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 2154 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2154 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2154 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label 17039 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label" number of vertices = 8231 total surface area = 5378 mm^2 total gray matter volume = 14756 mm^3 average cortical thickness = 2.651 mm +- 0.490 mm average integrated rectified mean curvature = 0.111 average integrated rectified Gaussian curvature = 0.021 folding index = 86 intrinsic curvature index = 6.9 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 14:42:44 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.xBJhe7/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.xBJhe7/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.xBJhe7/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.xBJhe7/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.xBJhe7/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.xBJhe7/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.xBJhe7/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.xBJhe7/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.xBJhe7/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3825 values in range Counting number of voxels in first frame Found 3824 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3824 3824.000000 147136 2.598956 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -19.48 -65.09 42.96 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 3825 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3825 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3825 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label 18962 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label" number of vertices = 10558 total surface area = 6819 mm^2 total gray matter volume = 20915 mm^3 average cortical thickness = 2.819 mm +- 0.473 mm average integrated rectified mean curvature = 0.119 average integrated rectified Gaussian curvature = 0.022 folding index = 124 intrinsic curvature index = 9.6 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path cc.bodypf --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path cc.bodypf --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: cc.bodypf Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr... Done in 0.893 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 14:43:07 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.5yPFtB/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.5yPFtB/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.5yPFtB/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.5yPFtB/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.5yPFtB/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.5yPFtB/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.5yPFtB/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.5yPFtB/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.5yPFtB/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2203 values in range Counting number of voxels in first frame Found 2202 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2202 2202.000000 143986 1.529315 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 17.12 21.23 55.46 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 2203 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2203 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2203 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label 14194 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label" number of vertices = 7869 total surface area = 5186 mm^2 total gray matter volume = 17195 mm^3 average cortical thickness = 3.087 mm +- 0.637 mm average integrated rectified mean curvature = 0.124 average integrated rectified Gaussian curvature = 0.028 folding index = 93 intrinsic curvature index = 8.7 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 14:43:29 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.43JhpS/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.43JhpS/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.43JhpS/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.43JhpS/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.43JhpS/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.43JhpS/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.43JhpS/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.43JhpS/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.43JhpS/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1645 values in range Counting number of voxels in first frame Found 1644 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 1644 1644.000000 147136 1.117334 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -22.36 18.39 52.35 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 1645 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1645 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1645 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label 13673 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label" number of vertices = 7069 total surface area = 4690 mm^2 total gray matter volume = 16327 mm^3 average cortical thickness = 3.157 mm +- 0.608 mm average integrated rectified mean curvature = 0.122 average integrated rectified Gaussian curvature = 0.027 folding index = 86 intrinsic curvature index = 8.0 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path cc.bodypm --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path cc.bodypm --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: cc.bodypm Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr... Done in 0.897 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 14:43:52 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.IoPHdC/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.IoPHdC/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.IoPHdC/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.IoPHdC/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.IoPHdC/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.IoPHdC/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.IoPHdC/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.IoPHdC/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.IoPHdC/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2880 values in range Counting number of voxels in first frame Found 2879 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2879 2879.000000 143986 1.999500 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 13.35 -3.73 64.53 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 2880 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2880 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2880 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label 12528 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label" number of vertices = 8260 total surface area = 5487 mm^2 total gray matter volume = 19835 mm^3 average cortical thickness = 3.223 mm +- 0.601 mm average integrated rectified mean curvature = 0.114 average integrated rectified Gaussian curvature = 0.023 folding index = 84 intrinsic curvature index = 7.6 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 14:44:14 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.gh6kOa/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.gh6kOa/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.gh6kOa/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.gh6kOa/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.gh6kOa/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.gh6kOa/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.gh6kOa/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.gh6kOa/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.gh6kOa/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2915 values in range Counting number of voxels in first frame Found 2914 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2914 2914.000000 147136 1.980481 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -19.00 -4.82 64.98 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 2915 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2915 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2915 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label 12943 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label" number of vertices = 8594 total surface area = 5745 mm^2 total gray matter volume = 21355 mm^3 average cortical thickness = 3.247 mm +- 0.589 mm average integrated rectified mean curvature = 0.115 average integrated rectified Gaussian curvature = 0.022 folding index = 87 intrinsic curvature index = 7.9 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path cc.bodyt --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path cc.bodyt --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: cc.bodyt Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr... Done in 1.074 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 14:44:38 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.owbMJm/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.owbMJm/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.owbMJm/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.owbMJm/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.owbMJm/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.owbMJm/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.owbMJm/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.owbMJm/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.owbMJm/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2404 values in range Counting number of voxels in first frame Found 2403 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2403 2403.000000 143986 1.668912 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 51.52 -21.63 18.26 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 2404 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2404 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2404 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label 11298 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label" number of vertices = 6290 total surface area = 3960 mm^2 total gray matter volume = 16833 mm^3 average cortical thickness = 3.505 mm +- 0.643 mm average integrated rectified mean curvature = 0.108 average integrated rectified Gaussian curvature = 0.023 folding index = 70 intrinsic curvature index = 5.7 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 14:45:00 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.RGgqYL/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.RGgqYL/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.RGgqYL/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.RGgqYL/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.RGgqYL/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.RGgqYL/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.RGgqYL/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.RGgqYL/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.RGgqYL/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2851 values in range Counting number of voxels in first frame Found 2850 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2850 2850.000000 147136 1.936983 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -50.69 -34.45 7.05 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 2851 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2851 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2851 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label 15037 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label" number of vertices = 8979 total surface area = 5700 mm^2 total gray matter volume = 20905 mm^3 average cortical thickness = 3.165 mm +- 0.614 mm average integrated rectified mean curvature = 0.109 average integrated rectified Gaussian curvature = 0.023 folding index = 105 intrinsic curvature index = 8.5 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path cc.genu --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path cc.genu --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: cc.genu Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr... Done in 0.866 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 14:45:23 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.Kwq3lV/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.Kwq3lV/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.Kwq3lV/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.Kwq3lV/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.Kwq3lV/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.Kwq3lV/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.Kwq3lV/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.Kwq3lV/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.Kwq3lV/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2476 values in range Counting number of voxels in first frame Found 2475 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2475 2475.000000 143986 1.718917 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 22.84 43.36 35.70 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 2476 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2476 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2476 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label 12771 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label" number of vertices = 7623 total surface area = 5094 mm^2 total gray matter volume = 16331 mm^3 average cortical thickness = 2.872 mm +- 0.588 mm average integrated rectified mean curvature = 0.135 average integrated rectified Gaussian curvature = 0.034 folding index = 116 intrinsic curvature index = 10.6 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 14:45:45 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.KhKxtl/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.KhKxtl/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.KhKxtl/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.KhKxtl/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.KhKxtl/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.KhKxtl/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.KhKxtl/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.KhKxtl/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.KhKxtl/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2697 values in range Counting number of voxels in first frame Found 2696 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2696 2696.000000 147136 1.832318 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -21.56 38.08 39.60 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 2697 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2697 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2697 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label 14119 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label" number of vertices = 8341 total surface area = 5511 mm^2 total gray matter volume = 17997 mm^3 average cortical thickness = 2.995 mm +- 0.562 mm average integrated rectified mean curvature = 0.128 average integrated rectified Gaussian curvature = 0.029 folding index = 113 intrinsic curvature index = 9.6 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path cc.rostrum --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path cc.rostrum --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: cc.rostrum Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr... Done in 0.866 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 14:46:08 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.0AaX6n/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.0AaX6n/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.0AaX6n/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.0AaX6n/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.0AaX6n/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.0AaX6n/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.0AaX6n/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.0AaX6n/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.0AaX6n/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2267 values in range Counting number of voxels in first frame Found 2266 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2266 2266.000000 143986 1.573764 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 13.42 50.17 26.20 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 2267 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2267 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2267 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label 7579 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label" number of vertices = 5341 total surface area = 3685 mm^2 total gray matter volume = 13323 mm^3 average cortical thickness = 2.996 mm +- 0.665 mm average integrated rectified mean curvature = 0.149 average integrated rectified Gaussian curvature = 0.038 folding index = 108 intrinsic curvature index = 8.8 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 14:46:30 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.DPhVXG/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.DPhVXG/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.DPhVXG/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.DPhVXG/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.DPhVXG/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.DPhVXG/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.DPhVXG/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.DPhVXG/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.DPhVXG/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2355 values in range Counting number of voxels in first frame Found 2354 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2354 2354.000000 147136 1.599880 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -15.56 50.57 25.27 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 2355 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2355 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2355 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label 7675 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label" number of vertices = 5067 total surface area = 3398 mm^2 total gray matter volume = 12261 mm^3 average cortical thickness = 3.021 mm +- 0.608 mm average integrated rectified mean curvature = 0.141 average integrated rectified Gaussian curvature = 0.035 folding index = 96 intrinsic curvature index = 7.3 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path cc.splenium --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path cc.splenium --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: cc.splenium Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr... Done in 0.921 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 14:46:53 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.CPUo9C/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.CPUo9C/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.CPUo9C/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.CPUo9C/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.CPUo9C/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.CPUo9C/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.CPUo9C/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.CPUo9C/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.CPUo9C/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3594 values in range Counting number of voxels in first frame Found 3593 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3593 3593.000000 143986 2.495381 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 17.26 -82.94 26.27 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 3594 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3594 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3594 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label 15665 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label" number of vertices = 10058 total surface area = 6434 mm^2 total gray matter volume = 17713 mm^3 average cortical thickness = 2.526 mm +- 0.565 mm average integrated rectified mean curvature = 0.125 average integrated rectified Gaussian curvature = 0.026 folding index = 127 intrinsic curvature index = 10.5 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 14:47:16 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.4hinji/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.4hinji/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.4hinji/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.4hinji/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.4hinji/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.4hinji/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.4hinji/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.4hinji/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.4hinji/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3539 values in range Counting number of voxels in first frame Found 3538 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3538 3538.000000 147136 2.404578 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -23.52 -85.52 20.51 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 3539 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3539 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3539 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label 16955 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label" number of vertices = 10185 total surface area = 6418 mm^2 total gray matter volume = 16800 mm^3 average cortical thickness = 2.466 mm +- 0.543 mm average integrated rectified mean curvature = 0.123 average integrated rectified Gaussian curvature = 0.024 folding index = 126 intrinsic curvature index = 10.1 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/mcp_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path mcp --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/mcp_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/mcp_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/mcp_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path mcp --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/mcp_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/mcp_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/mcp_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: mcp Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/mcp_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/mcp_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/mcp_avg16_syn_bbr... Done in 0.924 sec. dmri_pathstats done /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path lh.af --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path lh.af --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: lh.af Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr... Done in 0.948 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 14:47:41 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.sfP8R9/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.sfP8R9/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.sfP8R9/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.sfP8R9/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.sfP8R9/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.sfP8R9/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.sfP8R9/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.sfP8R9/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.sfP8R9/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3606 values in range Counting number of voxels in first frame Found 3605 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3605 3605.000000 147136 2.450114 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -35.03 19.94 36.63 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 3606 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3606 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3606 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label 18381 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label" number of vertices = 10656 total surface area = 7010 mm^2 total gray matter volume = 21823 mm^3 average cortical thickness = 2.969 mm +- 0.555 mm average integrated rectified mean curvature = 0.122 average integrated rectified Gaussian curvature = 0.027 folding index = 145 intrinsic curvature index = 11.0 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 14:48:03 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.RdTkVs/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.RdTkVs/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.RdTkVs/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.RdTkVs/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.RdTkVs/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.RdTkVs/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.RdTkVs/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.RdTkVs/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.RdTkVs/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 4166 values in range Counting number of voxels in first frame Found 4165 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 4165 4165.000000 147136 2.830714 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -48.90 -43.77 5.15 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 4166 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 4166 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4166 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label 18117 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label" number of vertices = 10757 total surface area = 7036 mm^2 total gray matter volume = 22410 mm^3 average cortical thickness = 3.036 mm +- 0.584 mm average integrated rectified mean curvature = 0.109 average integrated rectified Gaussian curvature = 0.021 folding index = 114 intrinsic curvature index = 9.1 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path rh.af --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path rh.af --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: rh.af Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr... Done in 0.866 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 14:48:27 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.xRB6DY/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.xRB6DY/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.xRB6DY/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.xRB6DY/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.xRB6DY/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.xRB6DY/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.xRB6DY/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.xRB6DY/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.xRB6DY/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3594 values in range Counting number of voxels in first frame Found 3593 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3593 3593.000000 143986 2.495381 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 31.79 25.04 39.20 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 3594 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3594 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3594 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label 17798 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label" number of vertices = 10294 total surface area = 6817 mm^2 total gray matter volume = 20530 mm^3 average cortical thickness = 2.934 mm +- 0.560 mm average integrated rectified mean curvature = 0.125 average integrated rectified Gaussian curvature = 0.027 folding index = 138 intrinsic curvature index = 10.9 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 14:48:49 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.wMLCgH/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.wMLCgH/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.wMLCgH/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.wMLCgH/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.wMLCgH/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.wMLCgH/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.wMLCgH/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.wMLCgH/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.wMLCgH/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3712 values in range Counting number of voxels in first frame Found 3711 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3711 3711.000000 143986 2.577334 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 42.47 -51.63 14.73 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 3712 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3712 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3712 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label 19338 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label" number of vertices = 9921 total surface area = 6518 mm^2 total gray matter volume = 20119 mm^3 average cortical thickness = 3.052 mm +- 0.608 mm average integrated rectified mean curvature = 0.114 average integrated rectified Gaussian curvature = 0.022 folding index = 105 intrinsic curvature index = 8.7 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path lh.ar --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path lh.ar --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: lh.ar Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr... Done in 0.771 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 14:49:12 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/tmp.ewEbbx/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/tmp.ewEbbx/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/tmp.ewEbbx/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/tmp.ewEbbx/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/tmp.ewEbbx/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/tmp.ewEbbx/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/tmp.ewEbbx/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/tmp.ewEbbx/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/tmp.ewEbbx/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1155 values in range Counting number of voxels in first frame Found 1154 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 1154 1154.000000 147136 0.784308 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -52.08 -22.96 17.45 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 1155 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1155 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1155 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label 3670 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label" number of vertices = 1706 total surface area = 1073 mm^2 total gray matter volume = 3931 mm^3 average cortical thickness = 3.220 mm +- 0.549 mm average integrated rectified mean curvature = 0.105 average integrated rectified Gaussian curvature = 0.021 folding index = 18 intrinsic curvature index = 1.5 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path rh.ar --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path rh.ar --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: rh.ar Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr... Done in 0.76 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 14:49:35 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/tmp.Jff3CJ/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/tmp.Jff3CJ/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/tmp.Jff3CJ/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/tmp.Jff3CJ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/tmp.Jff3CJ/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/tmp.Jff3CJ/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/tmp.Jff3CJ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/tmp.Jff3CJ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/tmp.Jff3CJ/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1167 values in range Counting number of voxels in first frame Found 1166 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 1166 1166.000000 143986 0.809801 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 52.68 -16.52 19.62 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 1167 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1167 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1167 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label 4142 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label" number of vertices = 2154 total surface area = 1301 mm^2 total gray matter volume = 6566 mm^3 average cortical thickness = 3.794 mm +- 0.641 mm average integrated rectified mean curvature = 0.119 average integrated rectified Gaussian curvature = 0.024 folding index = 25 intrinsic curvature index = 2.3 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path lh.atr --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path lh.atr --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: lh.atr Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr... Done in 0.765 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 14:49:58 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/tmp.UGNxKO/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/tmp.UGNxKO/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/tmp.UGNxKO/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/tmp.UGNxKO/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/tmp.UGNxKO/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/tmp.UGNxKO/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/tmp.UGNxKO/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/tmp.UGNxKO/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/tmp.UGNxKO/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1940 values in range Counting number of voxels in first frame Found 1939 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 1939 1939.000000 147136 1.317828 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -16.79 47.48 34.55 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 1940 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1940 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1940 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label 11169 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label" number of vertices = 5683 total surface area = 3820 mm^2 total gray matter volume = 12591 mm^3 average cortical thickness = 2.970 mm +- 0.594 mm average integrated rectified mean curvature = 0.132 average integrated rectified Gaussian curvature = 0.031 folding index = 83 intrinsic curvature index = 7.0 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path rh.atr --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path rh.atr --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: rh.atr Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr... Done in 0.763 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 14:50:20 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/tmp.mHywpq/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/tmp.mHywpq/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/tmp.mHywpq/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/tmp.mHywpq/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/tmp.mHywpq/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/tmp.mHywpq/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/tmp.mHywpq/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/tmp.mHywpq/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/tmp.mHywpq/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2321 values in range Counting number of voxels in first frame Found 2320 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2320 2320.000000 143986 1.611268 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 19.98 44.14 37.25 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 2321 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2321 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2321 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label 11243 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label" number of vertices = 6628 total surface area = 4436 mm^2 total gray matter volume = 13946 mm^3 average cortical thickness = 2.829 mm +- 0.592 mm average integrated rectified mean curvature = 0.133 average integrated rectified Gaussian curvature = 0.032 folding index = 93 intrinsic curvature index = 8.6 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path lh.cbd --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path lh.cbd --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: lh.cbd Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr... Done in 0.809 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 14:50:43 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.9rHLVL/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.9rHLVL/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.9rHLVL/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.9rHLVL/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.9rHLVL/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.9rHLVL/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.9rHLVL/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.9rHLVL/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.9rHLVL/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1484 values in range Counting number of voxels in first frame Found 1483 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 1483 1483.000000 147136 1.007911 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -11.67 15.45 46.71 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 1484 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1484 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1484 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label 8236 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label" number of vertices = 3906 total surface area = 2579 mm^2 total gray matter volume = 8484 mm^3 average cortical thickness = 3.205 mm +- 0.743 mm average integrated rectified mean curvature = 0.119 average integrated rectified Gaussian curvature = 0.025 folding index = 39 intrinsic curvature index = 4.0 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 14:51:05 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.dOUO1n/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.dOUO1n/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.dOUO1n/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.dOUO1n/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.dOUO1n/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.dOUO1n/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.dOUO1n/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.dOUO1n/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.dOUO1n/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1781 values in range Counting number of voxels in first frame Found 1780 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 1780 1780.000000 147136 1.209765 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -15.14 -56.49 27.09 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 1781 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1781 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1781 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label 8305 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label" number of vertices = 3557 total surface area = 2327 mm^2 total gray matter volume = 6335 mm^3 average cortical thickness = 2.863 mm +- 0.671 mm average integrated rectified mean curvature = 0.130 average integrated rectified Gaussian curvature = 0.028 folding index = 45 intrinsic curvature index = 4.2 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path rh.cbd --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path rh.cbd --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: rh.cbd Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr... Done in 0.779 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 14:51:28 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.mm3ghO/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.mm3ghO/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.mm3ghO/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.mm3ghO/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.mm3ghO/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.mm3ghO/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.mm3ghO/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.mm3ghO/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.mm3ghO/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1630 values in range Counting number of voxels in first frame Found 1629 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 1629 1629.000000 143986 1.131360 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 10.56 15.71 49.92 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 1630 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1630 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1630 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label 10979 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label" number of vertices = 4959 total surface area = 3279 mm^2 total gray matter volume = 10945 mm^3 average cortical thickness = 3.153 mm +- 0.776 mm average integrated rectified mean curvature = 0.132 average integrated rectified Gaussian curvature = 0.031 folding index = 62 intrinsic curvature index = 6.4 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 14:51:50 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.WaHXrK/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.WaHXrK/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.WaHXrK/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.WaHXrK/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.WaHXrK/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.WaHXrK/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.WaHXrK/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.WaHXrK/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.WaHXrK/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2325 values in range Counting number of voxels in first frame Found 2324 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2324 2324.000000 143986 1.614046 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 8.50 -58.17 30.07 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 2325 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2325 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2325 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label 8231 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label" number of vertices = 4324 total surface area = 2764 mm^2 total gray matter volume = 8312 mm^3 average cortical thickness = 2.848 mm +- 0.644 mm average integrated rectified mean curvature = 0.127 average integrated rectified Gaussian curvature = 0.030 folding index = 55 intrinsic curvature index = 5.1 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path lh.cbv --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path lh.cbv --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: lh.cbv Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr... Done in 0.774 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 14:52:12 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.HlktIe/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.HlktIe/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.HlktIe/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.HlktIe/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.HlktIe/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.HlktIe/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.HlktIe/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.HlktIe/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.HlktIe/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1784 values in range Counting number of voxels in first frame Found 1783 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 1783 1783.000000 147136 1.211804 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -17.66 -68.91 38.28 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 1784 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1784 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1784 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label 6939 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label" number of vertices = 3686 total surface area = 2407 mm^2 total gray matter volume = 6782 mm^3 average cortical thickness = 2.817 mm +- 0.407 mm average integrated rectified mean curvature = 0.114 average integrated rectified Gaussian curvature = 0.021 folding index = 39 intrinsic curvature index = 2.7 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 14:52:35 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.BoZ5QK/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.BoZ5QK/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.BoZ5QK/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.BoZ5QK/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.BoZ5QK/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.BoZ5QK/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.BoZ5QK/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.BoZ5QK/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.BoZ5QK/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1025 values in range Counting number of voxels in first frame Found 1024 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 1024 1024.000000 147136 0.695955 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -23.82 -36.54 0.31 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 1025 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1025 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1025 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label 3647 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label" number of vertices = 1697 total surface area = 1137 mm^2 total gray matter volume = 2637 mm^3 average cortical thickness = 2.746 mm +- 1.067 mm average integrated rectified mean curvature = 0.107 average integrated rectified Gaussian curvature = 0.025 folding index = 19 intrinsic curvature index = 1.5 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path rh.cbv --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path rh.cbv --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: rh.cbv Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr... Done in 0.764 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 14:52:57 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.93RLrU/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.93RLrU/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.93RLrU/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.93RLrU/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.93RLrU/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.93RLrU/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.93RLrU/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.93RLrU/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.93RLrU/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2250 values in range Counting number of voxels in first frame Found 2249 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2249 2249.000000 143986 1.561957 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 7.71 -68.78 34.75 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 2250 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2250 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2250 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label 8033 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label" number of vertices = 4397 total surface area = 2862 mm^2 total gray matter volume = 8318 mm^3 average cortical thickness = 2.674 mm +- 0.537 mm average integrated rectified mean curvature = 0.115 average integrated rectified Gaussian curvature = 0.022 folding index = 48 intrinsic curvature index = 4.1 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 14:53:19 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.Eg2Iha/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.Eg2Iha/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.Eg2Iha/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.Eg2Iha/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.Eg2Iha/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.Eg2Iha/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.Eg2Iha/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.Eg2Iha/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.Eg2Iha/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1815 values in range Counting number of voxels in first frame Found 1814 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 1814 1814.000000 143986 1.259845 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 23.86 -28.88 -0.38 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 1815 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1815 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1815 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label 6208 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label" number of vertices = 3652 total surface area = 2465 mm^2 total gray matter volume = 5544 mm^3 average cortical thickness = 2.951 mm +- 1.093 mm average integrated rectified mean curvature = 0.114 average integrated rectified Gaussian curvature = 0.026 folding index = 41 intrinsic curvature index = 3.7 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path lh.cst --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path lh.cst --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: lh.cst Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr... Done in 0.791 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 14:53:42 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.8tWSTm/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.8tWSTm/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.8tWSTm/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.8tWSTm/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.8tWSTm/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.8tWSTm/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.8tWSTm/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.8tWSTm/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.8tWSTm/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2824 values in range Counting number of voxels in first frame Found 2823 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2823 2823.000000 147136 1.918633 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -16.35 -26.61 65.01 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 2824 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2824 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2824 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label 14381 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label" number of vertices = 8147 total surface area = 5397 mm^2 total gray matter volume = 17518 mm^3 average cortical thickness = 3.039 mm +- 0.629 mm average integrated rectified mean curvature = 0.111 average integrated rectified Gaussian curvature = 0.020 folding index = 69 intrinsic curvature index = 6.9 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path rh.cst --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path rh.cst --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: rh.cst Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr... Done in 0.792 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 14:54:05 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/tmp.fBaCja/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/tmp.fBaCja/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/tmp.fBaCja/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/tmp.fBaCja/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/tmp.fBaCja/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/tmp.fBaCja/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/tmp.fBaCja/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/tmp.fBaCja/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/tmp.fBaCja/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3076 values in range Counting number of voxels in first frame Found 3075 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3075 3075.000000 143986 2.135624 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 14.28 -31.26 66.52 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 3076 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3076 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3076 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label 12698 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label" number of vertices = 7940 total surface area = 5130 mm^2 total gray matter volume = 17915 mm^3 average cortical thickness = 3.050 mm +- 0.734 mm average integrated rectified mean curvature = 0.100 average integrated rectified Gaussian curvature = 0.019 folding index = 62 intrinsic curvature index = 6.1 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path lh.emc --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path lh.emc --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: lh.emc Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr... Done in 0.782 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 14:54:28 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.g4uy9X/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.g4uy9X/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.g4uy9X/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.g4uy9X/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.g4uy9X/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.g4uy9X/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.g4uy9X/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.g4uy9X/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.g4uy9X/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3120 values in range Counting number of voxels in first frame Found 3119 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3119 3119.000000 147136 2.119808 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -34.76 32.67 20.93 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 3120 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3120 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3120 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label 8931 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label" number of vertices = 6562 total surface area = 4340 mm^2 total gray matter volume = 15908 mm^3 average cortical thickness = 3.093 mm +- 0.582 mm average integrated rectified mean curvature = 0.132 average integrated rectified Gaussian curvature = 0.028 folding index = 101 intrinsic curvature index = 7.4 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 14:54:50 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.9JWzu2/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.9JWzu2/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.9JWzu2/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.9JWzu2/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.9JWzu2/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.9JWzu2/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.9JWzu2/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.9JWzu2/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.9JWzu2/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2941 values in range Counting number of voxels in first frame Found 2940 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2940 2940.000000 147136 1.998151 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -49.84 -24.60 -3.00 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 2941 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2941 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2941 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label 11584 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label" number of vertices = 6880 total surface area = 4510 mm^2 total gray matter volume = 16265 mm^3 average cortical thickness = 3.181 mm +- 0.664 mm average integrated rectified mean curvature = 0.112 average integrated rectified Gaussian curvature = 0.024 folding index = 88 intrinsic curvature index = 6.2 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path rh.emc --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path rh.emc --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: rh.emc Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr... Done in 0.785 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 14:55:14 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.A4JZOW/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.A4JZOW/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.A4JZOW/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.A4JZOW/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.A4JZOW/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.A4JZOW/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.A4JZOW/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.A4JZOW/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.A4JZOW/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2959 values in range Counting number of voxels in first frame Found 2958 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2958 2958.000000 143986 2.054366 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 33.44 35.80 21.07 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 2959 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2959 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2959 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label 8035 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label" number of vertices = 5591 total surface area = 3666 mm^2 total gray matter volume = 13745 mm^3 average cortical thickness = 3.146 mm +- 0.608 mm average integrated rectified mean curvature = 0.134 average integrated rectified Gaussian curvature = 0.032 folding index = 90 intrinsic curvature index = 7.1 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 14:55:36 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.kJiQut/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.kJiQut/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.kJiQut/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.kJiQut/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.kJiQut/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.kJiQut/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.kJiQut/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.kJiQut/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.kJiQut/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3057 values in range Counting number of voxels in first frame Found 3056 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3056 3056.000000 143986 2.122429 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 49.17 -27.67 3.97 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 3057 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3057 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3057 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label 11096 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label" number of vertices = 6279 total surface area = 4140 mm^2 total gray matter volume = 16159 mm^3 average cortical thickness = 3.396 mm +- 0.721 mm average integrated rectified mean curvature = 0.114 average integrated rectified Gaussian curvature = 0.022 folding index = 66 intrinsic curvature index = 5.7 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path lh.fat --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path lh.fat --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: lh.fat Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr... Done in 0.794 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 14:55:59 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.C0Kq77/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.C0Kq77/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.C0Kq77/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.C0Kq77/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.C0Kq77/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.C0Kq77/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.C0Kq77/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.C0Kq77/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.C0Kq77/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1998 values in range Counting number of voxels in first frame Found 1997 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 1997 1997.000000 147136 1.357248 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -16.74 -4.74 64.13 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 1998 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1998 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1998 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label 9455 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label" number of vertices = 5724 total surface area = 3843 mm^2 total gray matter volume = 13963 mm^3 average cortical thickness = 3.258 mm +- 0.581 mm average integrated rectified mean curvature = 0.115 average integrated rectified Gaussian curvature = 0.022 folding index = 59 intrinsic curvature index = 5.4 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 14:56:21 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.nIJVVG/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.nIJVVG/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.nIJVVG/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.nIJVVG/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.nIJVVG/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.nIJVVG/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.nIJVVG/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.nIJVVG/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.nIJVVG/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1931 values in range Counting number of voxels in first frame Found 1930 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 1930 1930.000000 147136 1.311712 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -43.14 4.62 30.77 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 1931 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1931 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1931 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label 6304 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label" number of vertices = 3397 total surface area = 2180 mm^2 total gray matter volume = 8196 mm^3 average cortical thickness = 3.225 mm +- 0.536 mm average integrated rectified mean curvature = 0.117 average integrated rectified Gaussian curvature = 0.025 folding index = 48 intrinsic curvature index = 3.2 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path rh.fat --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path rh.fat --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: rh.fat Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr... Done in 0.769 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 14:56:44 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.4ojTYj/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.4ojTYj/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.4ojTYj/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.4ojTYj/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.4ojTYj/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.4ojTYj/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.4ojTYj/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.4ojTYj/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.4ojTYj/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2479 values in range Counting number of voxels in first frame Found 2478 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2478 2478.000000 143986 1.721001 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 10.40 -0.69 64.18 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 2479 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2479 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2479 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label 10041 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label" number of vertices = 6373 total surface area = 4246 mm^2 total gray matter volume = 15132 mm^3 average cortical thickness = 3.256 mm +- 0.634 mm average integrated rectified mean curvature = 0.116 average integrated rectified Gaussian curvature = 0.024 folding index = 64 intrinsic curvature index = 6.4 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 14:57:06 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.skTCYJ/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.skTCYJ/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.skTCYJ/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.skTCYJ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.skTCYJ/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.skTCYJ/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.skTCYJ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.skTCYJ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.skTCYJ/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2310 values in range Counting number of voxels in first frame Found 2309 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2309 2309.000000 143986 1.603628 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 39.91 7.06 32.42 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 2310 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2310 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2310 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label 6751 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label" number of vertices = 4302 total surface area = 2920 mm^2 total gray matter volume = 10058 mm^3 average cortical thickness = 3.072 mm +- 0.526 mm average integrated rectified mean curvature = 0.123 average integrated rectified Gaussian curvature = 0.026 folding index = 57 intrinsic curvature index = 4.6 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path lh.fx --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path lh.fx --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: lh.fx Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr... Done in 0.81 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 14:57:28 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/tmp.BAJp72/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/tmp.BAJp72/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/tmp.BAJp72/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/tmp.BAJp72/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/tmp.BAJp72/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/tmp.BAJp72/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/tmp.BAJp72/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/tmp.BAJp72/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/tmp.BAJp72/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3139 values in range Counting number of voxels in first frame Found 3138 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3138 3138.000000 147136 2.132721 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -33.49 5.12 -8.37 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 3139 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3139 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3139 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label 7033 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label" number of vertices = 5128 total surface area = 3408 mm^2 total gray matter volume = 14609 mm^3 average cortical thickness = 3.561 mm +- 0.792 mm average integrated rectified mean curvature = 0.127 average integrated rectified Gaussian curvature = 0.041 folding index = 78 intrinsic curvature index = 8.3 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path rh.fx --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path rh.fx --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: rh.fx Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr... Done in 0.805 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 14:57:52 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.CM6Nq0/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.CM6Nq0/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.CM6Nq0/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.CM6Nq0/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.CM6Nq0/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.CM6Nq0/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.CM6Nq0/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.CM6Nq0/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.CM6Nq0/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3159 values in range Counting number of voxels in first frame Found 3158 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3158 3158.000000 143986 2.193269 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 33.80 3.42 -7.33 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 3159 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3159 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3159 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label 7405 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label" number of vertices = 4911 total surface area = 3216 mm^2 total gray matter volume = 13424 mm^3 average cortical thickness = 3.547 mm +- 0.901 mm average integrated rectified mean curvature = 0.126 average integrated rectified Gaussian curvature = 0.038 folding index = 69 intrinsic curvature index = 7.3 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path lh.ilf --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path lh.ilf --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: lh.ilf Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr... Done in 0.791 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 14:58:15 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.5lbtFD/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.5lbtFD/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.5lbtFD/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.5lbtFD/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.5lbtFD/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.5lbtFD/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.5lbtFD/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.5lbtFD/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.5lbtFD/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3582 values in range Counting number of voxels in first frame Found 3581 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3581 3581.000000 147136 2.433803 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -37.84 2.40 -6.85 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 3582 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3582 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3582 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label 9371 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label" number of vertices = 6689 total surface area = 4414 mm^2 total gray matter volume = 18280 mm^3 average cortical thickness = 3.495 mm +- 0.833 mm average integrated rectified mean curvature = 0.122 average integrated rectified Gaussian curvature = 0.038 folding index = 101 intrinsic curvature index = 10.3 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 14:58:37 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.3rxk3M/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.3rxk3M/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.3rxk3M/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.3rxk3M/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.3rxk3M/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.3rxk3M/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.3rxk3M/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.3rxk3M/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.3rxk3M/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3307 values in range Counting number of voxels in first frame Found 3306 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3306 3306.000000 147136 2.246901 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -25.95 -79.21 11.57 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 3307 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3307 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3307 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label 20599 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label" number of vertices = 10983 total surface area = 7131 mm^2 total gray matter volume = 16757 mm^3 average cortical thickness = 2.468 mm +- 0.535 mm average integrated rectified mean curvature = 0.130 average integrated rectified Gaussian curvature = 0.027 folding index = 127 intrinsic curvature index = 11.6 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path rh.ilf --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path rh.ilf --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: rh.ilf Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr... Done in 0.79 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 14:59:01 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.7AaJ3U/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.7AaJ3U/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.7AaJ3U/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.7AaJ3U/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.7AaJ3U/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.7AaJ3U/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.7AaJ3U/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.7AaJ3U/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.7AaJ3U/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3217 values in range Counting number of voxels in first frame Found 3216 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3216 3216.000000 143986 2.233550 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 39.20 1.25 -3.90 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 3217 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3217 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3217 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label 9506 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label" number of vertices = 6674 total surface area = 4383 mm^2 total gray matter volume = 18569 mm^3 average cortical thickness = 3.598 mm +- 0.804 mm average integrated rectified mean curvature = 0.115 average integrated rectified Gaussian curvature = 0.030 folding index = 76 intrinsic curvature index = 8.2 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 14:59:23 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.d2Uf4t/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.d2Uf4t/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.d2Uf4t/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.d2Uf4t/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.d2Uf4t/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.d2Uf4t/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.d2Uf4t/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.d2Uf4t/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.d2Uf4t/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3363 values in range Counting number of voxels in first frame Found 3362 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3362 3362.000000 143986 2.334949 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 16.22 -80.52 8.06 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 3363 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3363 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3363 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label 20301 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label" number of vertices = 12373 total surface area = 7870 mm^2 total gray matter volume = 18044 mm^3 average cortical thickness = 2.397 mm +- 0.586 mm average integrated rectified mean curvature = 0.133 average integrated rectified Gaussian curvature = 0.031 folding index = 145 intrinsic curvature index = 15.6 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path lh.mlf --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path lh.mlf --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: lh.mlf Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr... Done in 0.788 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 14:59:46 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.DPDcy5/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.DPDcy5/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.DPDcy5/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.DPDcy5/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.DPDcy5/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.DPDcy5/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.DPDcy5/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.DPDcy5/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.DPDcy5/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2694 values in range Counting number of voxels in first frame Found 2693 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2693 2693.000000 147136 1.830279 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -43.42 1.45 3.25 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 2694 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2694 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2694 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label 7171 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label" number of vertices = 4136 total surface area = 2671 mm^2 total gray matter volume = 11588 mm^3 average cortical thickness = 3.614 mm +- 0.677 mm average integrated rectified mean curvature = 0.108 average integrated rectified Gaussian curvature = 0.024 folding index = 46 intrinsic curvature index = 4.6 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 15:00:08 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.CftKOa/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.CftKOa/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.CftKOa/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.CftKOa/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.CftKOa/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.CftKOa/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.CftKOa/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.CftKOa/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.CftKOa/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2344 values in range Counting number of voxels in first frame Found 2343 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2343 2343.000000 147136 1.592404 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -26.61 -83.83 19.53 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 2344 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2344 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2344 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label 15126 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label" number of vertices = 7823 total surface area = 4945 mm^2 total gray matter volume = 12841 mm^3 average cortical thickness = 2.503 mm +- 0.539 mm average integrated rectified mean curvature = 0.122 average integrated rectified Gaussian curvature = 0.024 folding index = 95 intrinsic curvature index = 7.4 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path rh.mlf --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path rh.mlf --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: rh.mlf Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr... Done in 0.776 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 15:00:31 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.T8VwCQ/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.T8VwCQ/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.T8VwCQ/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.T8VwCQ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.T8VwCQ/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.T8VwCQ/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.T8VwCQ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.T8VwCQ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.T8VwCQ/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1676 values in range Counting number of voxels in first frame Found 1675 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 1675 1675.000000 143986 1.163308 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 48.44 -6.79 12.39 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 1676 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1676 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1676 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label 5295 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label" number of vertices = 2699 total surface area = 1710 mm^2 total gray matter volume = 7121 mm^3 average cortical thickness = 3.625 mm +- 0.644 mm average integrated rectified mean curvature = 0.098 average integrated rectified Gaussian curvature = 0.019 folding index = 24 intrinsic curvature index = 2.2 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 15:00:53 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.MwKmeV/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.MwKmeV/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.MwKmeV/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.MwKmeV/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.MwKmeV/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.MwKmeV/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.MwKmeV/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.MwKmeV/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.MwKmeV/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2958 values in range Counting number of voxels in first frame Found 2957 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2957 2957.000000 143986 2.053672 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 22.55 -77.83 28.73 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 2958 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2958 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2958 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label 18165 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label" number of vertices = 9399 total surface area = 6070 mm^2 total gray matter volume = 15434 mm^3 average cortical thickness = 2.549 mm +- 0.505 mm average integrated rectified mean curvature = 0.120 average integrated rectified Gaussian curvature = 0.024 folding index = 103 intrinsic curvature index = 8.5 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path lh.or --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path lh.or --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: lh.or Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr... Done in 0.769 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 15:01:16 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/tmp.TvEWbz/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/tmp.TvEWbz/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/tmp.TvEWbz/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/tmp.TvEWbz/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/tmp.TvEWbz/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/tmp.TvEWbz/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/tmp.TvEWbz/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/tmp.TvEWbz/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/tmp.TvEWbz/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2710 values in range Counting number of voxels in first frame Found 2709 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2709 2709.000000 147136 1.841154 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -26.73 -82.66 9.40 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 2710 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2710 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2710 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label 16885 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label" number of vertices = 8498 total surface area = 5464 mm^2 total gray matter volume = 12758 mm^3 average cortical thickness = 2.441 mm +- 0.557 mm average integrated rectified mean curvature = 0.132 average integrated rectified Gaussian curvature = 0.025 folding index = 106 intrinsic curvature index = 8.8 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path rh.or --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path rh.or --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: rh.or Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr... Done in 0.764 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 15:01:39 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/tmp.Af473m/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/tmp.Af473m/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/tmp.Af473m/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/tmp.Af473m/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/tmp.Af473m/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/tmp.Af473m/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/tmp.Af473m/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/tmp.Af473m/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/tmp.Af473m/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3369 values in range Counting number of voxels in first frame Found 3368 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3368 3368.000000 143986 2.339116 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 14.64 -86.75 8.61 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 3369 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3369 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3369 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label 14476 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label" number of vertices = 9155 total surface area = 5719 mm^2 total gray matter volume = 13761 mm^3 average cortical thickness = 2.395 mm +- 0.518 mm average integrated rectified mean curvature = 0.132 average integrated rectified Gaussian curvature = 0.030 folding index = 110 intrinsic curvature index = 11.1 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path lh.slf1 --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path lh.slf1 --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: lh.slf1 Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr... Done in 0.803 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 15:02:02 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.VUQxI9/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.VUQxI9/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.VUQxI9/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.VUQxI9/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.VUQxI9/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.VUQxI9/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.VUQxI9/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.VUQxI9/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.VUQxI9/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3134 values in range Counting number of voxels in first frame Found 3133 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3133 3133.000000 147136 2.129323 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -15.16 17.73 57.44 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 3134 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3134 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3134 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label 14828 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label" number of vertices = 9718 total surface area = 6488 mm^2 total gray matter volume = 23772 mm^3 average cortical thickness = 3.230 mm +- 0.603 mm average integrated rectified mean curvature = 0.121 average integrated rectified Gaussian curvature = 0.025 folding index = 118 intrinsic curvature index = 9.9 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 15:02:25 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.rG39Oi/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.rG39Oi/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.rG39Oi/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.rG39Oi/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.rG39Oi/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.rG39Oi/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.rG39Oi/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.rG39Oi/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.rG39Oi/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3650 values in range Counting number of voxels in first frame Found 3649 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3649 3649.000000 147136 2.480018 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -15.88 -65.17 51.71 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 3650 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3650 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3650 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label 9760 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label" number of vertices = 6500 total surface area = 4230 mm^2 total gray matter volume = 13782 mm^3 average cortical thickness = 2.831 mm +- 0.461 mm average integrated rectified mean curvature = 0.123 average integrated rectified Gaussian curvature = 0.023 folding index = 88 intrinsic curvature index = 5.9 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path rh.slf1 --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path rh.slf1 --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: rh.slf1 Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr... Done in 0.789 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 15:02:48 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.OrAKkC/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.OrAKkC/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.OrAKkC/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.OrAKkC/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.OrAKkC/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.OrAKkC/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.OrAKkC/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.OrAKkC/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.OrAKkC/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3038 values in range Counting number of voxels in first frame Found 3037 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3037 3037.000000 143986 2.109233 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 13.55 31.99 47.52 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 3038 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3038 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3038 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label 16484 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label" number of vertices = 9439 total surface area = 6282 mm^2 total gray matter volume = 20047 mm^3 average cortical thickness = 3.034 mm +- 0.665 mm average integrated rectified mean curvature = 0.129 average integrated rectified Gaussian curvature = 0.030 folding index = 115 intrinsic curvature index = 11.8 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 15:03:10 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.U3Upi6/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.U3Upi6/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.U3Upi6/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.U3Upi6/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.U3Upi6/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.U3Upi6/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.U3Upi6/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.U3Upi6/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.U3Upi6/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3072 values in range Counting number of voxels in first frame Found 3071 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3071 3071.000000 143986 2.132846 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 8.29 -62.75 51.85 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 3072 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3072 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3072 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label 9663 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label" number of vertices = 5913 total surface area = 3825 mm^2 total gray matter volume = 11259 mm^3 average cortical thickness = 2.648 mm +- 0.447 mm average integrated rectified mean curvature = 0.113 average integrated rectified Gaussian curvature = 0.020 folding index = 71 intrinsic curvature index = 4.8 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path lh.slf2 --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path lh.slf2 --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: lh.slf2 Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr... Done in 0.798 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 15:03:33 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.zJ0n0I/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.zJ0n0I/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.zJ0n0I/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.zJ0n0I/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.zJ0n0I/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.zJ0n0I/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.zJ0n0I/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.zJ0n0I/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.zJ0n0I/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3352 values in range Counting number of voxels in first frame Found 3351 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3351 3351.000000 147136 2.277485 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -28.95 27.10 40.31 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 3352 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3352 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3352 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label 19539 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label" number of vertices = 10256 total surface area = 6736 mm^2 total gray matter volume = 20620 mm^3 average cortical thickness = 2.928 mm +- 0.513 mm average integrated rectified mean curvature = 0.126 average integrated rectified Gaussian curvature = 0.028 folding index = 142 intrinsic curvature index = 11.5 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 15:03:56 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.rPelzW/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.rPelzW/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.rPelzW/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.rPelzW/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.rPelzW/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.rPelzW/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.rPelzW/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.rPelzW/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.rPelzW/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3996 values in range Counting number of voxels in first frame Found 3995 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3995 3995.000000 147136 2.715175 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -40.46 -67.34 35.05 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 3996 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3996 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3996 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label 15227 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label" number of vertices = 10208 total surface area = 6668 mm^2 total gray matter volume = 20835 mm^3 average cortical thickness = 2.908 mm +- 0.534 mm average integrated rectified mean curvature = 0.116 average integrated rectified Gaussian curvature = 0.021 folding index = 119 intrinsic curvature index = 8.8 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path rh.slf2 --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path rh.slf2 --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: rh.slf2 Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr... Done in 0.792 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 15:04:19 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.ag9Amm/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.ag9Amm/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.ag9Amm/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.ag9Amm/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.ag9Amm/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.ag9Amm/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.ag9Amm/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.ag9Amm/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.ag9Amm/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2619 values in range Counting number of voxels in first frame Found 2618 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2618 2618.000000 143986 1.818232 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 28.23 25.14 44.83 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 2619 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2619 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2619 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label 13889 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label" number of vertices = 7246 total surface area = 4776 mm^2 total gray matter volume = 14513 mm^3 average cortical thickness = 2.910 mm +- 0.541 mm average integrated rectified mean curvature = 0.129 average integrated rectified Gaussian curvature = 0.029 folding index = 98 intrinsic curvature index = 8.8 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 15:04:41 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.YpWqqM/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.YpWqqM/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.YpWqqM/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.YpWqqM/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.YpWqqM/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.YpWqqM/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.YpWqqM/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.YpWqqM/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.YpWqqM/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3760 values in range Counting number of voxels in first frame Found 3759 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3759 3759.000000 143986 2.610670 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 34.35 -66.48 36.19 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 3760 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3760 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3760 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label 15217 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label" number of vertices = 9807 total surface area = 6413 mm^2 total gray matter volume = 19342 mm^3 average cortical thickness = 2.831 mm +- 0.524 mm average integrated rectified mean curvature = 0.112 average integrated rectified Gaussian curvature = 0.021 folding index = 108 intrinsic curvature index = 8.0 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path lh.slf3 --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path lh.slf3 --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: lh.slf3 Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr... Done in 0.78 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 15:05:04 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.F9cQHs/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.F9cQHs/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.F9cQHs/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.F9cQHs/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.F9cQHs/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.F9cQHs/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.F9cQHs/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.F9cQHs/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.F9cQHs/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2156 values in range Counting number of voxels in first frame Found 2155 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2155 2155.000000 147136 1.464631 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -35.39 19.34 33.18 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 2156 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2156 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2156 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label 10575 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label" number of vertices = 5227 total surface area = 3419 mm^2 total gray matter volume = 10136 mm^3 average cortical thickness = 2.949 mm +- 0.532 mm average integrated rectified mean curvature = 0.120 average integrated rectified Gaussian curvature = 0.027 folding index = 61 intrinsic curvature index = 5.4 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 15:05:27 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.E9x6Fc/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.E9x6Fc/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.E9x6Fc/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.E9x6Fc/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.E9x6Fc/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.E9x6Fc/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.E9x6Fc/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.E9x6Fc/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.E9x6Fc/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3218 values in range Counting number of voxels in first frame Found 3217 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3217 3217.000000 147136 2.186413 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -46.26 -50.27 37.68 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 3218 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3218 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3218 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label 15408 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label" number of vertices = 8808 total surface area = 5710 mm^2 total gray matter volume = 17517 mm^3 average cortical thickness = 3.001 mm +- 0.557 mm average integrated rectified mean curvature = 0.107 average integrated rectified Gaussian curvature = 0.020 folding index = 77 intrinsic curvature index = 7.0 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path rh.slf3 --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path rh.slf3 --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: rh.slf3 Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr... Done in 0.779 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 15:05:50 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.kUnA6i/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.kUnA6i/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.kUnA6i/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.kUnA6i/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.kUnA6i/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.kUnA6i/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.kUnA6i/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.kUnA6i/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.kUnA6i/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2443 values in range Counting number of voxels in first frame Found 2442 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2442 2442.000000 143986 1.695998 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 35.25 16.08 35.01 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 2443 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2443 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2443 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label 11398 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label" number of vertices = 5754 total surface area = 3820 mm^2 total gray matter volume = 12188 mm^3 average cortical thickness = 3.018 mm +- 0.593 mm average integrated rectified mean curvature = 0.125 average integrated rectified Gaussian curvature = 0.026 folding index = 75 intrinsic curvature index = 6.2 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 15:06:12 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.YtUJLu/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.YtUJLu/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.YtUJLu/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.YtUJLu/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.YtUJLu/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.YtUJLu/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.YtUJLu/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.YtUJLu/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.YtUJLu/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2825 values in range Counting number of voxels in first frame Found 2824 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2824 2824.000000 143986 1.961302 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 38.96 -54.55 40.45 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 2825 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2825 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2825 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label 12547 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label" number of vertices = 7001 total surface area = 4612 mm^2 total gray matter volume = 13620 mm^3 average cortical thickness = 2.904 mm +- 0.554 mm average integrated rectified mean curvature = 0.109 average integrated rectified Gaussian curvature = 0.021 folding index = 64 intrinsic curvature index = 5.8 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path lh.uf --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path lh.uf --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: lh.uf Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr... Done in 0.779 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 15:06:35 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.45Q6C6/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.45Q6C6/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.45Q6C6/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.45Q6C6/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.45Q6C6/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.45Q6C6/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.45Q6C6/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.45Q6C6/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.45Q6C6/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2597 values in range Counting number of voxels in first frame Found 2596 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2596 2596.000000 147136 1.764354 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -14.94 49.20 26.23 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 2597 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2597 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2597 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label 9180 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label" number of vertices = 6080 total surface area = 4133 mm^2 total gray matter volume = 14447 mm^3 average cortical thickness = 3.034 mm +- 0.635 mm average integrated rectified mean curvature = 0.139 average integrated rectified Gaussian curvature = 0.034 folding index = 109 intrinsic curvature index = 8.2 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 15:06:57 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.1kPGP8/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.1kPGP8/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.1kPGP8/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.1kPGP8/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.1kPGP8/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.1kPGP8/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.1kPGP8/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.1kPGP8/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.1kPGP8/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2525 values in range Counting number of voxels in first frame Found 2524 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2524 2524.000000 147136 1.715420 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -36.92 8.65 -5.22 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Found 2525 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2525 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2525 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label 5686 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label" number of vertices = 3952 total surface area = 2598 mm^2 total gray matter volume = 12797 mm^3 average cortical thickness = 3.779 mm +- 0.684 mm average integrated rectified mean curvature = 0.125 average integrated rectified Gaussian curvature = 0.035 folding index = 63 intrinsic curvature index = 5.6 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path rh.uf --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit --path rh.uf --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/dtifit Pathway name: rh.uf Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr... Done in 0.797 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz Thu Jul 13 15:07:20 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.zF9eQQ/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.zF9eQQ/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.zF9eQQ/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.zF9eQQ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.zF9eQQ/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.zF9eQQ/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.zF9eQQ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.zF9eQQ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.zF9eQQ/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2243 values in range Counting number of voxels in first frame Found 2242 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2242 2242.000000 143986 1.557096 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 15.56 47.94 21.09 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 2243 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2243 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2243 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label 8061 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label" number of vertices = 5177 total surface area = 3568 mm^2 total gray matter volume = 12370 mm^3 average cortical thickness = 2.967 mm +- 0.665 mm average integrated rectified mean curvature = 0.147 average integrated rectified Gaussian curvature = 0.036 folding index = 103 intrinsic curvature index = 7.8 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz Thu Jul 13 15:07:42 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux compute-0-3.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.NYOIs9/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.NYOIs9/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.NYOIs9/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.NYOIs9/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.NYOIs9/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.NYOIs9/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.NYOIs9/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.NYOIs9/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.NYOIs9/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2868 values in range Counting number of voxels in first frame Found 2867 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2867 2867.000000 143986 1.991166 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 36.35 8.20 -5.37 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Found 2868 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/fs FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2868 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2868 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label 5932 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/fs/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label" number of vertices = 4298 total surface area = 2756 mm^2 total gray matter volume = 13783 mm^3 average cortical thickness = 3.789 mm +- 0.694 mm average integrated rectified mean curvature = 0.122 average integrated rectified Gaussian curvature = 0.031 folding index = 57 intrinsic curvature index = 5.2 /usr/local/freesurfer/7.3.2//bin/dmri_mergepaths --indir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath --in acomm_avg16_syn_bbr/path.pd.nii.gz cc.bodyc_avg16_syn_bbr/path.pd.nii.gz cc.bodyp_avg16_syn_bbr/path.pd.nii.gz cc.bodypf_avg16_syn_bbr/path.pd.nii.gz cc.bodypm_avg16_syn_bbr/path.pd.nii.gz cc.bodyt_avg16_syn_bbr/path.pd.nii.gz cc.genu_avg16_syn_bbr/path.pd.nii.gz cc.rostrum_avg16_syn_bbr/path.pd.nii.gz cc.splenium_avg16_syn_bbr/path.pd.nii.gz lh.af_avg16_syn_bbr/path.pd.nii.gz lh.ar_avg16_syn_bbr/path.pd.nii.gz lh.atr_avg16_syn_bbr/path.pd.nii.gz lh.cbd_avg16_syn_bbr/path.pd.nii.gz lh.cbv_avg16_syn_bbr/path.pd.nii.gz lh.cst_avg16_syn_bbr/path.pd.nii.gz lh.emc_avg16_syn_bbr/path.pd.nii.gz lh.fat_avg16_syn_bbr/path.pd.nii.gz lh.fx_avg16_syn_bbr/path.pd.nii.gz lh.ilf_avg16_syn_bbr/path.pd.nii.gz lh.mlf_avg16_syn_bbr/path.pd.nii.gz lh.or_avg16_syn_bbr/path.pd.nii.gz lh.slf1_avg16_syn_bbr/path.pd.nii.gz lh.slf2_avg16_syn_bbr/path.pd.nii.gz lh.slf3_avg16_syn_bbr/path.pd.nii.gz lh.uf_avg16_syn_bbr/path.pd.nii.gz mcp_avg16_syn_bbr/path.pd.nii.gz rh.af_avg16_syn_bbr/path.pd.nii.gz rh.ar_avg16_syn_bbr/path.pd.nii.gz rh.atr_avg16_syn_bbr/path.pd.nii.gz rh.cbd_avg16_syn_bbr/path.pd.nii.gz rh.cbv_avg16_syn_bbr/path.pd.nii.gz rh.cst_avg16_syn_bbr/path.pd.nii.gz rh.emc_avg16_syn_bbr/path.pd.nii.gz rh.fat_avg16_syn_bbr/path.pd.nii.gz rh.fx_avg16_syn_bbr/path.pd.nii.gz rh.ilf_avg16_syn_bbr/path.pd.nii.gz rh.mlf_avg16_syn_bbr/path.pd.nii.gz rh.or_avg16_syn_bbr/path.pd.nii.gz rh.slf1_avg16_syn_bbr/path.pd.nii.gz rh.slf2_avg16_syn_bbr/path.pd.nii.gz rh.slf3_avg16_syn_bbr/path.pd.nii.gz rh.uf_avg16_syn_bbr/path.pd.nii.gz --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/merged_avg16_syn_bbr.mgz --ctab /usr/local/freesurfer/7.3.2//FreeSurferColorLUT.txt --thresh .2 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_mergepaths --indir /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath --in acomm_avg16_syn_bbr/path.pd.nii.gz cc.bodyc_avg16_syn_bbr/path.pd.nii.gz cc.bodyp_avg16_syn_bbr/path.pd.nii.gz cc.bodypf_avg16_syn_bbr/path.pd.nii.gz cc.bodypm_avg16_syn_bbr/path.pd.nii.gz cc.bodyt_avg16_syn_bbr/path.pd.nii.gz cc.genu_avg16_syn_bbr/path.pd.nii.gz cc.rostrum_avg16_syn_bbr/path.pd.nii.gz cc.splenium_avg16_syn_bbr/path.pd.nii.gz lh.af_avg16_syn_bbr/path.pd.nii.gz lh.ar_avg16_syn_bbr/path.pd.nii.gz lh.atr_avg16_syn_bbr/path.pd.nii.gz lh.cbd_avg16_syn_bbr/path.pd.nii.gz lh.cbv_avg16_syn_bbr/path.pd.nii.gz lh.cst_avg16_syn_bbr/path.pd.nii.gz lh.emc_avg16_syn_bbr/path.pd.nii.gz lh.fat_avg16_syn_bbr/path.pd.nii.gz lh.fx_avg16_syn_bbr/path.pd.nii.gz lh.ilf_avg16_syn_bbr/path.pd.nii.gz lh.mlf_avg16_syn_bbr/path.pd.nii.gz lh.or_avg16_syn_bbr/path.pd.nii.gz lh.slf1_avg16_syn_bbr/path.pd.nii.gz lh.slf2_avg16_syn_bbr/path.pd.nii.gz lh.slf3_avg16_syn_bbr/path.pd.nii.gz lh.uf_avg16_syn_bbr/path.pd.nii.gz mcp_avg16_syn_bbr/path.pd.nii.gz rh.af_avg16_syn_bbr/path.pd.nii.gz rh.ar_avg16_syn_bbr/path.pd.nii.gz rh.atr_avg16_syn_bbr/path.pd.nii.gz rh.cbd_avg16_syn_bbr/path.pd.nii.gz rh.cbv_avg16_syn_bbr/path.pd.nii.gz rh.cst_avg16_syn_bbr/path.pd.nii.gz rh.emc_avg16_syn_bbr/path.pd.nii.gz rh.fat_avg16_syn_bbr/path.pd.nii.gz rh.fx_avg16_syn_bbr/path.pd.nii.gz rh.ilf_avg16_syn_bbr/path.pd.nii.gz rh.mlf_avg16_syn_bbr/path.pd.nii.gz rh.or_avg16_syn_bbr/path.pd.nii.gz rh.slf1_avg16_syn_bbr/path.pd.nii.gz rh.slf2_avg16_syn_bbr/path.pd.nii.gz rh.slf3_avg16_syn_bbr/path.pd.nii.gz rh.uf_avg16_syn_bbr/path.pd.nii.gz --out /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/merged_avg16_syn_bbr.mgz --ctab /usr/local/freesurfer/7.3.2//FreeSurferColorLUT.txt --thresh .2 sysname Linux hostname compute-0-3.nmr.mgh.harvard.edu machine x86_64 user erd37 Input directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath Input files: acomm_avg16_syn_bbr/path.pd.nii.gz cc.bodyc_avg16_syn_bbr/path.pd.nii.gz cc.bodyp_avg16_syn_bbr/path.pd.nii.gz cc.bodypf_avg16_syn_bbr/path.pd.nii.gz cc.bodypm_avg16_syn_bbr/path.pd.nii.gz cc.bodyt_avg16_syn_bbr/path.pd.nii.gz cc.genu_avg16_syn_bbr/path.pd.nii.gz cc.rostrum_avg16_syn_bbr/path.pd.nii.gz cc.splenium_avg16_syn_bbr/path.pd.nii.gz lh.af_avg16_syn_bbr/path.pd.nii.gz lh.ar_avg16_syn_bbr/path.pd.nii.gz lh.atr_avg16_syn_bbr/path.pd.nii.gz lh.cbd_avg16_syn_bbr/path.pd.nii.gz lh.cbv_avg16_syn_bbr/path.pd.nii.gz lh.cst_avg16_syn_bbr/path.pd.nii.gz lh.emc_avg16_syn_bbr/path.pd.nii.gz lh.fat_avg16_syn_bbr/path.pd.nii.gz lh.fx_avg16_syn_bbr/path.pd.nii.gz lh.ilf_avg16_syn_bbr/path.pd.nii.gz lh.mlf_avg16_syn_bbr/path.pd.nii.gz lh.or_avg16_syn_bbr/path.pd.nii.gz lh.slf1_avg16_syn_bbr/path.pd.nii.gz lh.slf2_avg16_syn_bbr/path.pd.nii.gz lh.slf3_avg16_syn_bbr/path.pd.nii.gz lh.uf_avg16_syn_bbr/path.pd.nii.gz mcp_avg16_syn_bbr/path.pd.nii.gz rh.af_avg16_syn_bbr/path.pd.nii.gz rh.ar_avg16_syn_bbr/path.pd.nii.gz rh.atr_avg16_syn_bbr/path.pd.nii.gz rh.cbd_avg16_syn_bbr/path.pd.nii.gz rh.cbv_avg16_syn_bbr/path.pd.nii.gz rh.cst_avg16_syn_bbr/path.pd.nii.gz rh.emc_avg16_syn_bbr/path.pd.nii.gz rh.fat_avg16_syn_bbr/path.pd.nii.gz rh.fx_avg16_syn_bbr/path.pd.nii.gz rh.ilf_avg16_syn_bbr/path.pd.nii.gz rh.mlf_avg16_syn_bbr/path.pd.nii.gz rh.or_avg16_syn_bbr/path.pd.nii.gz rh.slf1_avg16_syn_bbr/path.pd.nii.gz rh.slf2_avg16_syn_bbr/path.pd.nii.gz rh.slf3_avg16_syn_bbr/path.pd.nii.gz rh.uf_avg16_syn_bbr/path.pd.nii.gz Output file: /autofs/space/nyx_002/users/edann/test_tutorial/trc_cm/sub-BANDA001/dpath/merged_avg16_syn_bbr.mgz Color table file: /autofs/vast/freesurfer/centos7_x86_64/7.3.2/FreeSurferColorLUT.txt Lower threshold for display: 0.200000 Merging volume 1 of 42... Threshold: 26.2 Name: Anterior Commissure Merging volume 2 of 42... Threshold: 11.2 Name: Corpus Callosum - Body - Central Merging volume 3 of 42... Threshold: 17.2 Name: Corpus Callosum - Body - Parietal Merging volume 4 of 42... Threshold: 14.6 Name: Corpus Callosum - Body - Prefrontal Merging volume 5 of 42... Threshold: 10.2 Name: Corpus Callosum - Body - Premotor Merging volume 6 of 42... Threshold: 8.4 Name: Corpus Callosum - Body - Temporal Merging volume 7 of 42... Threshold: 13.6 Name: Corpus Callosum - Genu Merging volume 8 of 42... Threshold: 13.2 Name: Corpus Callosum - Rostrum Merging volume 9 of 42... Threshold: 14.6 Name: Corpus Callosum - Splenium Merging volume 10 of 42... Threshold: 12.4 Name: Left Arcuate Fasciculus Merging volume 11 of 42... Threshold: 26.8 Name: Left Acoustic Radiation Merging volume 12 of 42... Threshold: 28.6 Name: Left Anterior Thalamic Radiation Merging volume 13 of 42... Threshold: 52.6 Name: Left Cingulum Bundle - Dorsal Merging volume 14 of 42... Threshold: 48 Name: Left Cingulum Bundle - Ventral Merging volume 15 of 42... Threshold: 15.2 Name: Left Corticospinal Tract Merging volume 16 of 42... Threshold: 18.2 Name: Left Extreme Capsule Merging volume 17 of 42... Threshold: 16.6 Name: Left Frontal Aslant Tract Merging volume 18 of 42... Threshold: 23.6 Name: Left Fornix Merging volume 19 of 42... Threshold: 15.4 Name: Left Inferior Longitudinal Fasciculus Merging volume 20 of 42... Threshold: 22 Name: Left Middle Longitudinal Fasciculus Merging volume 21 of 42... Threshold: 25 Name: Left Optic Radiation Merging volume 22 of 42... Threshold: 18.4 Name: Left Superior Longitudinal Fasciculus - I Merging volume 23 of 42... Threshold: 13.8 Name: Left Superior Longitudinal Fasciculus - II Merging volume 24 of 42... Threshold: 19.6 Name: Left Superior Longitudinal Fasciculus - III Merging volume 25 of 42... Threshold: 22.6 Name: Left Uncinate Fasciculus Merging volume 26 of 42... Threshold: 9.6 Name: Middle Cerebellar Peduncle Merging volume 27 of 42... Threshold: 13.6 Name: Right Arcuate Fasciculus Merging volume 28 of 42... Threshold: 31.6 Name: Right Acoustic Radiation Merging volume 29 of 42... Threshold: 32.8 Name: Right Anterior Thalamic Radiation Merging volume 30 of 42... Threshold: 47 Name: Right Cingulum Bundle - Dorsal Merging volume 31 of 42... Threshold: 23 Name: Right Cingulum Bundle - Ventral Merging volume 32 of 42... Threshold: 14.6 Name: Right Corticospinal Tract Merging volume 33 of 42... Threshold: 26.8 Name: Right Extreme Capsule Merging volume 34 of 42... Threshold: 15 Name: Right Frontal Aslant Tract Merging volume 35 of 42... Threshold: 0 Name: Right Fornix Merging volume 36 of 42... Threshold: 12.6 Name: Right Inferior Longitudinal Fasciculus Merging volume 37 of 42... Threshold: 22.8 Name: Right Middle Longitudinal Fasciculus Merging volume 38 of 42... Threshold: 25 Name: Right Optic Radiation Merging volume 39 of 42... Threshold: 20.2 Name: Right Superior Longitudinal Fasciculus - I Merging volume 40 of 42... Threshold: 14.6 Name: Right Superior Longitudinal Fasciculus - II Merging volume 41 of 42... Threshold: 24.8 Name: Right Superior Longitudinal Fasciculus - III Merging volume 42 of 42... Threshold: 25.4 Name: Right Uncinate Fasciculus Done in 9.426 sec. dmri_mergepaths done #------------------------------------- trac-paths finished without error at Thu Jul 13 15:08:11 EDT 2023 New invocation of trac-all Fri Jul 14 12:21:16 EDT 2023 /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/trac-all -path -c dmrirc.rerun Subject sub-BANDA001 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Actual FREESURFER_HOME /autofs/vast/freesurfer/centos7_x86_64/7.3.2 build-stamp.txt: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 erd37 atalanta.nmr.mgh.harvard.edu Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 131070 memorylocked unlimited maxproc 32768 maxlocks unlimited maxsignal 2062265 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 527971832 119614784 255178800 229816 153178248 406696716 Swap: 67108860 0 67108860 ######################################## Program versions: trac-all 7.3.2 mri_convert --all-info ProgramName: mri_convert ProgramArguments: mri_convert --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-16:21:16-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 FLIRT version 6.0 bbregister 7.3.2 mri_cvs_register 7.3.2 ProgramName: dmri_motion ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_motion --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-16:21:16-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_train ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_train --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-16:21:16-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_paths ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_paths --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-16:21:16-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_pathstats ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-16:21:16-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_mergepaths ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_mergepaths --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-16:21:16-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_group ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_group --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-16:21:16-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /usr/local/freesurfer/7.3.2/ Previous: /usr/local/freesurfer/7.3.2 New invocation of trac-paths erd37 atalanta.nmr.mgh.harvard.edu Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 7340032 kbytes descriptors 32768 memorylocked unlimited maxproc 2062265 maxlocks unlimited maxsignal 2062265 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 527971832 119618280 255152288 230540 153201264 406693224 Swap: 67108860 0 67108860 #------------------------------------- /usr/local/freesurfer/7.3.2//bin/trac-paths #------------------------------------- #@# DWI set selection Fri Jul 14 12:21:21 EDT 2023 ln -sf dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/data.nii.gz ln -sf dwi.bvecs /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvecs ln -sf dwi.bvals /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvals #------------------------------------- #@# Path reconstruction Fri Jul 14 12:21:21 EDT 2023 rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/mcp_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr /usr/local/freesurfer/7.3.2//bin/dmri_paths --outdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/mcp_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr 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/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/mcp_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.af_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.af_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.ar_avg16_syn_bbr_cpts_4.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.ar_avg16_syn_bbr_cpts_4.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.atr_avg16_syn_bbr_cpts_4.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_4.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.cbd_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.cbd_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.cbv_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.emc_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.emc_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.fat_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.fat_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.fx_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.ilf_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.ilf_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.mlf_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.mlf_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.or_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.or_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.slf1_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.slf1_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.slf2_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.slf2_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.slf3_avg16_syn_bbr_cpts_6.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.slf3_avg16_syn_bbr_cpts_6.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.uf_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.uf_avg16_syn_bbr_cpts_7.txt --nprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all --lprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all 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/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.uf_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.uf_avg16_syn_bbr_cpts_7_std.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_paths --outdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr 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/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.af_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.af_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.ar_avg16_syn_bbr_cpts_4.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.ar_avg16_syn_bbr_cpts_4.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.atr_avg16_syn_bbr_cpts_4.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_4.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.cbd_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.cbd_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.cbv_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.emc_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.emc_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.fat_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.fat_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.fx_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.ilf_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.ilf_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.mlf_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.mlf_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.or_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.or_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.slf1_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.slf1_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.slf2_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.slf2_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.slf3_avg16_syn_bbr_cpts_6.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.slf3_avg16_syn_bbr_cpts_6.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.uf_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.uf_avg16_syn_bbr_cpts_7.txt --nprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all --lprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all 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/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr DWIs: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/data.nii.gz Gradients: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvecs B-values: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvals Mask: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz BEDPOST directory: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/acomm_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.bodyc_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.bodyp_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.bodypf_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.bodypm_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.bodyt_avg16_syn_bbr_cpts_12.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.rostrum_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.splenium_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/mcp_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.af_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.af_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.ar_avg16_syn_bbr_cpts_4.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.ar_avg16_syn_bbr_cpts_4.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.atr_avg16_syn_bbr_cpts_4.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_4.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.cbd_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.cbd_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.cbv_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.emc_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.emc_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.fat_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.fat_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.fx_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_9.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.ilf_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.ilf_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.mlf_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.mlf_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.or_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.or_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.slf1_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.slf1_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.slf2_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.slf2_avg16_syn_bbr_cpts_8.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.slf3_avg16_syn_bbr_cpts_6.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.slf3_avg16_syn_bbr_cpts_6.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.uf_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.uf_avg16_syn_bbr_cpts_7.txt End ROI 1: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_end1_dil.nii.gz End ROI 2: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_end2_dil.nii.gz Neighbor aseg prior: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all Neighbor aseg label ID list: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all Local aseg label ID list: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz DWI-to-atlas affine registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/diff2syn.lta DWI-to-atlas nonlinear registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z Number of burn-in samples: 200 Number of post-burn-in samples: 7500 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/acomm_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.bodyc_avg16_syn_bbr_cpts_8_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.bodyp_avg16_syn_bbr_cpts_9_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.bodypf_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.bodypm_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.bodyt_avg16_syn_bbr_cpts_12_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.rostrum_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.splenium_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/mcp_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.af_avg16_syn_bbr_cpts_9_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.af_avg16_syn_bbr_cpts_9_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.ar_avg16_syn_bbr_cpts_4_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.ar_avg16_syn_bbr_cpts_4_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.atr_avg16_syn_bbr_cpts_4_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_4_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.cbd_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.cbd_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.cbv_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.emc_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.emc_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.fat_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.fat_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.fx_avg16_syn_bbr_cpts_9_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_9_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.ilf_avg16_syn_bbr_cpts_8_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.ilf_avg16_syn_bbr_cpts_8_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.mlf_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.mlf_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.or_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.or_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.slf1_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.slf1_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.slf2_avg16_syn_bbr_cpts_8_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.slf2_avg16_syn_bbr_cpts_8_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.slf3_avg16_syn_bbr_cpts_6_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.slf3_avg16_syn_bbr_cpts_6_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.uf_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.uf_avg16_syn_bbr_cpts_7_std.txt Loading DWIs from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/data.nii.gz Loading mask from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri.bedpostX Loading b-values from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvals Loading gradients from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvecs INFO: Found 28 baseline images (b = 5) out of a total of 398 frames INFO: Found 482157 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_end1_dil.nii.gz Loading affine registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/diff2syn.lta LTA registration format detected FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -3.375, ref det = -3.375 Loading non-linear registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Reading morph inverse Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.x.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.y.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.z.mgz Loading segmentation map from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/acomm_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/acomm_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/acomm_avg16_syn_bbr_cpts_7_std.txt Processing pathway 1 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr Done in 464.978 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.bodyc_avg16_syn_bbr_cpts_8.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyc_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.bodyc_avg16_syn_bbr_cpts_8_std.txt Processing pathway 2 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr Done in 539.12 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.bodyp_avg16_syn_bbr_cpts_9.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyp_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.bodyp_avg16_syn_bbr_cpts_9_std.txt Processing pathway 3 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr Done in 595.478 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.bodypf_avg16_syn_bbr_cpts_7.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypf_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.bodypf_avg16_syn_bbr_cpts_7_std.txt Processing pathway 4 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Success after 2 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr Done in 424.562 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.bodypm_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodypm_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.bodypm_avg16_syn_bbr_cpts_7_std.txt Processing pathway 5 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr Done in 410.268 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.bodyt_avg16_syn_bbr_cpts_12.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.bodyt_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.bodyt_avg16_syn_bbr_cpts_12_std.txt Processing pathway 6 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 10 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr Done in 955.523 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_5.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_5_std.txt Processing pathway 7 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr Done in 280.562 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.rostrum_avg16_syn_bbr_cpts_5.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.rostrum_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.rostrum_avg16_syn_bbr_cpts_5_std.txt Processing pathway 8 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Success after 3 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr Done in 250.126 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.splenium_avg16_syn_bbr_cpts_7.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.splenium_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.splenium_avg16_syn_bbr_cpts_7_std.txt Processing pathway 9 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr Done in 563.486 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/mcp_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/mcp_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/mcp_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/mcp_avg16_syn_bbr_cpts_7_std.txt Processing pathway 10 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/mcp_avg16_syn_bbr Done in 627.366 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.af_avg16_syn_bbr_cpts_9.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.af_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.af_avg16_syn_bbr_cpts_9_std.txt Processing pathway 11 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr Done in 773.114 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.af_avg16_syn_bbr_cpts_9.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.af_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.af_avg16_syn_bbr_cpts_9_std.txt Processing pathway 12 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr Done in 825.539 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.ar_avg16_syn_bbr_cpts_4.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ar_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.ar_avg16_syn_bbr_cpts_4_std.txt Processing pathway 13 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr Done in 121.849 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.ar_avg16_syn_bbr_cpts_4.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ar_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.ar_avg16_syn_bbr_cpts_4_std.txt Processing pathway 14 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 3 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr Done in 141.025 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.atr_avg16_syn_bbr_cpts_4.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.atr_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.atr_avg16_syn_bbr_cpts_4_std.txt Processing pathway 15 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr Done in 185.389 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_4.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.atr_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.atr_avg16_syn_bbr_cpts_4_std.txt Processing pathway 16 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr Done in 201.338 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.cbd_avg16_syn_bbr_cpts_7.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbd_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.cbd_avg16_syn_bbr_cpts_7_std.txt Processing pathway 17 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr Done in 441.602 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.cbd_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbd_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.cbd_avg16_syn_bbr_cpts_7_std.txt Processing pathway 18 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 2 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr Done in 451.556 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_5.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_5_std.txt Processing pathway 19 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr Done in 197.892 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.cbv_avg16_syn_bbr_cpts_5.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cbv_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.cbv_avg16_syn_bbr_cpts_5_std.txt Processing pathway 20 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 3 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr Done in 214.745 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7_std.txt Processing pathway 21 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr Done in 644.347 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7_std.txt Processing pathway 22 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr Done in 639.855 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.emc_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.emc_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.emc_avg16_syn_bbr_cpts_7_std.txt Processing pathway 23 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Reverting to original control points Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr Done in 409.058 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.emc_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.emc_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.emc_avg16_syn_bbr_cpts_7_std.txt Processing pathway 24 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 4 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 4 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 4 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 4 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 4 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 4 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Reverting to original control points Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr Done in 398.078 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.fat_avg16_syn_bbr_cpts_5.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fat_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.fat_avg16_syn_bbr_cpts_5_std.txt Processing pathway 25 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr Done in 216.615 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.fat_avg16_syn_bbr_cpts_5.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fat_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.fat_avg16_syn_bbr_cpts_5_std.txt Processing pathway 26 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr Done in 213.477 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.fx_avg16_syn_bbr_cpts_9.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.fx_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.fx_avg16_syn_bbr_cpts_9_std.txt Processing pathway 27 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 7 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 5 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr Done in 688.011 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_9.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_9_std.txt Processing pathway 28 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr Done in 700.471 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.ilf_avg16_syn_bbr_cpts_8.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.ilf_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.ilf_avg16_syn_bbr_cpts_8_std.txt Processing pathway 29 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr Done in 457.237 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.ilf_avg16_syn_bbr_cpts_8.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.ilf_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.ilf_avg16_syn_bbr_cpts_8_std.txt Processing pathway 30 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr Done in 379.368 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.mlf_avg16_syn_bbr_cpts_7.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.mlf_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.mlf_avg16_syn_bbr_cpts_7_std.txt Processing pathway 31 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 5 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr Done in 372.323 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.mlf_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.mlf_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.mlf_avg16_syn_bbr_cpts_7_std.txt Processing pathway 32 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 10 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr Done in 350.196 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.or_avg16_syn_bbr_cpts_5.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.or_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.or_avg16_syn_bbr_cpts_5_std.txt Processing pathway 33 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr Done in 269.444 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.or_avg16_syn_bbr_cpts_5.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.or_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.or_avg16_syn_bbr_cpts_5_std.txt Processing pathway 34 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Success after 2 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr Done in 284.117 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.slf1_avg16_syn_bbr_cpts_7.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf1_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.slf1_avg16_syn_bbr_cpts_7_std.txt Processing pathway 35 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 5 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr Done in 518.252 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.slf1_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf1_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.slf1_avg16_syn_bbr_cpts_7_std.txt Processing pathway 36 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr Done in 519.232 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.slf2_avg16_syn_bbr_cpts_8.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf2_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.slf2_avg16_syn_bbr_cpts_8_std.txt Processing pathway 37 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 2 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr Done in 701.741 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.slf2_avg16_syn_bbr_cpts_8.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf2_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.slf2_avg16_syn_bbr_cpts_8_std.txt Processing pathway 38 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 6 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 6 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 6 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 6 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 6 INFO: Attempting to perturb control points INFO: Success after 5 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr Done in 672.143 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.slf3_avg16_syn_bbr_cpts_6.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.slf3_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.slf3_avg16_syn_bbr_cpts_6_std.txt Processing pathway 39 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 5 INFO: Attempting to perturb control points INFO: Success after 2 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr Done in 398.571 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.slf3_avg16_syn_bbr_cpts_6.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.slf3_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.slf3_avg16_syn_bbr_cpts_6_std.txt Processing pathway 40 of 42... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr Done in 393.077 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.uf_avg16_syn_bbr_cpts_7.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.uf_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.uf_avg16_syn_bbr_cpts_7_std.txt Processing pathway 41 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr Done in 408.991 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.uf_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.uf_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.uf_avg16_syn_bbr_cpts_7_std.txt Processing pathway 42 of 42... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr Done in 386.789 sec. dmri_paths done fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/path.pd.nii.gz -thr 52.8000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/path.pd.nii.gz -thr 42.6000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/path.pd.nii.gz -thr 64.2000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/path.pd.nii.gz -thr 30.6000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/path.pd.nii.gz -thr 21.8000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/path.pd.nii.gz -thr 22.0000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/path.pd.nii.gz -thr 30.4000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.nii.gz fslmaths 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/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.nii.gz New invocation of trac-preproc erd37 atalanta.nmr.mgh.harvard.edu Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 7340032 kbytes descriptors 32768 memorylocked unlimited maxproc 2062265 maxlocks unlimited maxsignal 2062265 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 527971832 121100860 239787284 213732 167083688 405227448 Swap: 67108860 0 67108860 #------------------------------------- /usr/local/freesurfer/7.3.2//bin/trac-preproc #------------------------------------- #@# Priors Fri Jul 14 17:34:35 EDT 2023 /usr/local/freesurfer/7.3.2//bin/dmri_train --outdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn --out rh.cst_avg16_syn_bbr --slist /local_mount/space/atalanta/1/scratch/tmp.mgaPPD.16.sub-BANDA001.txt --trk syn/rh.cst.bbr.prep.trk --seg syn/aparc+aseg+thalnuc.nii.gz --cmask syn/cortex+2mm+crblm.nii.gz --lmask 16 --bmask /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/aparc+aseg_mask.nii.gz --fa /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit_FA.nii.gz --cptdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff --regnl /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/syn_warp.m3z --refnl /usr/local/freesurfer/7.3.2//trctrain/hcp/MGH35_HCP_FA_template.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/syn2diff.lta --ncpts 7 --xstr --trunc --aprior 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_train --outdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn --out rh.cst_avg16_syn_bbr --slist /local_mount/space/atalanta/1/scratch/tmp.mgaPPD.16.sub-BANDA001.txt --trk syn/rh.cst.bbr.prep.trk --seg syn/aparc+aseg+thalnuc.nii.gz --cmask syn/cortex+2mm+crblm.nii.gz --lmask 16 --bmask /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/aparc+aseg_mask.nii.gz --fa /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit_FA.nii.gz --cptdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff --regnl /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/syn_warp.m3z --refnl /usr/local/freesurfer/7.3.2//trctrain/hcp/MGH35_HCP_FA_template.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/syn2diff.lta --ncpts 7 --xstr --trunc --aprior sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Output directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn Output directory in test subject's space: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff Training subject directory list: /local_mount/space/atalanta/1/scratch/tmp.mgaPPD.16.sub-BANDA001.txt Location of streamline files relative to base: syn/rh.cst.bbr.prep.trk Location of cortex masks relative to base: syn/cortex+2mm+crblm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 Location of aparc+aseg's relative to base: syn/aparc+aseg+thalnuc.nii.gz Brain mask for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/aparc+aseg_mask.nii.gz FA map for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit_FA.nii.gz Affine registration from atlas to base for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn2diff.lta Nonlinear registration from atlas to base for output subject: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z Nonlinear registration source reference for output subject: /autofs/vast/freesurfer/centos7_x86_64/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz Number of control points for initial spline: 7 Exclude previously chosen center streamlines: 1 Use truncated streamlines: 1 Compute priors on underlying anatomy: 1 Compute priors on shape: 0 Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1001/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1001/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1006/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1006/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1007/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1007/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1008/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1008/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1009/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1009/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1010/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1010/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1011/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1011/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1012/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1012/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1013/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1013/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1015/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1015/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1016/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1016/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1017/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1017/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1019/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1019/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1021/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1021/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1023/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1023/syn/cortex+2mm+crblm.nii.gz Loading segmentation from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1024/syn/aparc+aseg+thalnuc.nii.gz Loading cortex mask from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1024/syn/cortex+2mm+crblm.nii.gz Loading brain mask of output subject from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/aparc+aseg_mask.nii.gz Loading FA map of output subject from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit_FA.nii.gz Loading non-linear registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Reading morph inverse Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.x.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.y.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.z.mgz Loading non-linear registration source for output subject from /autofs/vast/freesurfer/centos7_x86_64/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz Loading affine registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn2diff.lta LTA registration format detected FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -3.375, ref det = -3.375 Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1001/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1006/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1007/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1008/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1009/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1010/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1011/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1012/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1013/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1015/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1016/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1017/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1019/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1021/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1023/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected Loading streamlines from /usr/local/freesurfer/7.3.2//trctrain/hcp/mgh_1024/syn/rh.cst.bbr.prep.trk Pre-sorted training .trk file detected INFO: Rejected 43 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Have 14426 total streamlines (min/mean/max length: 64/80/97) Loading list of excluded streamlines from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_cpts_all.bad.txt INFO: Found 2 streamlines to be excluded Processing pathway 1 of 1... INFO: Have 13012 non-truncated streamlines (min/mean/max length: 64/79/97) Computing path histograms INFO: Total streamline volume is 13420 voxels Finding outlier streamlines Updating streamline distance ranking INFO: Split streamlines into 23 segments Computing prior on underlying anatomy (all streamlines) Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.048189 INFO: Points where local peaks in curvature occur are 47 72 75 (curv = 0.0646993) 44 74 69 (curv = 0.0866778) 43 73 65 (curv = 0.0900639) 45 72 57 (curv = 0.0956453) 46 73 48 (curv = 0.0684447) 52 70 39 (curv = 0.0694279) 55 65 24 (curv = 0.0579518) 58 60 18 (curv = 0.0589828) INFO: Intermediate dominant points are 48 70 87 43 73 65 45 72 57 46 73 48 52 70 39 58 60 18 58 55 9 INFO: Final dominant points are 48 70 87 43 73 65 45 72 57 48 73 45 52 70 39 58 60 18 58 55 9 INFO: Selected control points are 48 70 87 44 74 65 44 73 57 48 73 45 52 70 38 57 61 19 58 55 9 INFO: Distances between consecutive points are 23 8 13 9 22 12 INFO: Selected control points in test subject's space are 56 72 75 55 73 52 55 71 43 60 69 31 64 65 25 69 52 7 70 45 2 INFO: Distances between consecutive points in test subject's space are 23 9 13 8 23 9 Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_* Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_cpts_7.nii.gz Writing spline volume to /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7.nii.gz Done in 4.085 sec. dmri_train done #------------------------------------- trac-preproc finished without error at Fri Jul 14 17:34:44 EDT 2023 /usr/local/freesurfer/7.3.2//bin/dmri_paths --outdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr --dwi /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/data.nii.gz --grad /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvecs --bval /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvals --mask /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_end1_dil.nii.gz --roi2 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_end2_dil.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/syn_warp.m3z --init /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7.txt --nprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all --lprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all --seg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7_std.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_paths --outdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr --dwi /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/data.nii.gz --grad /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvecs --bval /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvals --mask /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_end1_dil.nii.gz --roi2 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_end2_dil.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/syn_warp.m3z --init /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7.txt --nprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all --lprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all --seg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7_std.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Output directory: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr DWIs: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/data.nii.gz Gradients: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvecs B-values: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvals Mask: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz BEDPOST directory: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7.txt End ROI 1: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_end1_dil.nii.gz End ROI 2: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_end2_dil.nii.gz Neighbor aseg prior: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all Neighbor aseg label ID list: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all Local aseg label ID list: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz DWI-to-atlas affine registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/diff2syn.lta DWI-to-atlas nonlinear registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z Number of burn-in samples: 200 Number of post-burn-in samples: 7500 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7_std.txt Loading DWIs from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/data.nii.gz Loading mask from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri.bedpostX Loading b-values from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvals Loading gradients from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvecs INFO: Found 28 baseline images (b = 5) out of a total of 398 frames INFO: Found 482157 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_end1_dil.nii.gz Loading affine registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/diff2syn.lta LTA registration format detected FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -3.375, ref det = -3.375 Loading non-linear registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Reading morph inverse Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.x.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.y.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.z.mgz Loading segmentation map from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.cst_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.cst_avg16_syn_bbr_cpts_7_std.txt Processing pathway 1 of 1... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr Done in 625.579 sec. dmri_paths done fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/path.pd.nii.gz -thr 52.8000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/path.pd.nii.gz -thr 42.6000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/path.pd.nii.gz -thr 64.2000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/path.pd.nii.gz -thr 30.6000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/path.pd.nii.gz -thr 21.8000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/path.pd.nii.gz -thr 22.0000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/path.pd.nii.gz -thr 30.4000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/path.pd.nii.gz -thr 25.6000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/path.pd.nii.gz -thr 35.4000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/mcp_avg16_syn_bbr/path.pd.nii.gz -thr 22.4000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/mcp_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/mcp_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/path.pd.nii.gz -thr 33.0000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/path.pd.nii.gz -thr 28.8000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/path.pd.nii.gz -thr 58.6000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/tmp.nii.gz rm -rf 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/usr/local/freesurfer/7.3.2//trctrain/hcp/syn/acomm.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyp.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodypf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodypm.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyt.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.genu.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.rostrum.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.splenium.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/mcp.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.af.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.af.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.ar.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.ar.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.atr.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.atr.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cbd.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cbd.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cbv.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cbv.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cst.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cst.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.emc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.emc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.fat.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.fat.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.fx.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.fx.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.ilf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.ilf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.mlf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.mlf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.or.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.or.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf1.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf1.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf2.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf2.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf3.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf3.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.uf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.uf.mean.trk --inref /usr/local/freesurfer/7.3.2//trctrain/hcp/MGH35_HCP_FA_template.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/syn_warp.m3z --inv --smooth --outasc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/mcp_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/path.ref.txt --outref /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit_FA.nii.gz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_trk2trk --in /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/acomm.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyp.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodypf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodypm.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyt.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.genu.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.rostrum.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.splenium.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/mcp.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.af.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.af.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.ar.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.ar.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.atr.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.atr.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cbd.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cbd.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cbv.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cbv.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cst.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cst.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.emc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.emc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.fat.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.fat.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.fx.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.fx.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.ilf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.ilf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.mlf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.mlf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.or.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.or.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf1.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf1.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf2.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf2.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf3.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf3.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.uf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.uf.mean.trk --inref /usr/local/freesurfer/7.3.2//trctrain/hcp/MGH35_HCP_FA_template.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/syn_warp.m3z --inv --smooth --outasc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/mcp_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/path.ref.txt --outref /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit_FA.nii.gz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input .trk files: /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/acomm.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyp.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodypf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodypm.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.bodyt.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.genu.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.rostrum.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.splenium.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/mcp.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.af.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.af.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.ar.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.ar.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.atr.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.atr.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cbd.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cbd.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cbv.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cbv.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cst.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.cst.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.emc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.emc.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.fat.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.fat.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.fx.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.fx.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.ilf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.ilf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.mlf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.mlf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.or.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.or.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf1.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf1.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf2.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf2.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.slf3.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.slf3.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.uf.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.uf.mean.trk Output text files: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/mcp_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/path.ref.txt Input reference: /autofs/vast/freesurfer/centos7_x86_64/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz Output reference: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit_FA.nii.gz Affine registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/diff2syn.lta Nonlinear registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z Invert registration: 1 Fill gaps between points: 0 Smoothing streamlines Loading affine registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/diff2syn.lta LTA registration format detected FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -3.375, ref det = -3.375 Loading non-linear registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Reading morph inverse Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.x.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.y.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.z.mgz Processing input file 1 of 42... 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Done in 0.005 sec. dmri_trk2trk done /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path acomm --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path acomm --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: acomm Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr... Done in 0.865 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:46:29 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.Fz4qXJ/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.Fz4qXJ/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.Fz4qXJ/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.Fz4qXJ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.Fz4qXJ/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.Fz4qXJ/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.Fz4qXJ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.Fz4qXJ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.Fz4qXJ/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2166 values in range Counting number of voxels in first frame Found 2165 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2165 2165.000000 143986 1.503618 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 32.62 9.29 -9.65 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 2166 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2166 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2166 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.label 4026 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt1.surf.label" number of vertices = 2897 total surface area = 1862 mm^2 total gray matter volume = 10107 mm^3 average cortical thickness = 3.845 mm +- 0.707 mm average integrated rectified mean curvature = 0.131 average integrated rectified Gaussian curvature = 0.035 folding index = 45 intrinsic curvature index = 3.9 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:46:40 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.rfwh1x/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.rfwh1x/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.rfwh1x/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.rfwh1x/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.rfwh1x/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.rfwh1x/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.rfwh1x/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.rfwh1x/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/tmp.rfwh1x/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2213 values in range Counting number of voxels in first frame Found 2212 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2212 2212.000000 147136 1.503371 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -32.76 9.42 -9.53 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 2213 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2213 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2213 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.label 4680 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/acomm_avg16_syn_bbr/endpt2.surf.label" number of vertices = 3161 total surface area = 2100 mm^2 total gray matter volume = 10768 mm^3 average cortical thickness = 3.835 mm +- 0.686 mm average integrated rectified mean curvature = 0.128 average integrated rectified Gaussian curvature = 0.040 folding index = 50 intrinsic curvature index = 4.9 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path cc.bodyc --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path cc.bodyc --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: cc.bodyc Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr... Done in 0.438 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:46:51 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.O064QJ/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.O064QJ/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.O064QJ/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.O064QJ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.O064QJ/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.O064QJ/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.O064QJ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.O064QJ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.O064QJ/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3269 values in range Counting number of voxels in first frame Found 3268 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3268 3268.000000 143986 2.269665 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 21.30 -30.52 62.01 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 3269 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3269 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3269 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label 16274 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt1.surf.label" number of vertices = 10373 total surface area = 6655 mm^2 total gray matter volume = 21726 mm^3 average cortical thickness = 2.953 mm +- 0.675 mm average integrated rectified mean curvature = 0.099 average integrated rectified Gaussian curvature = 0.018 folding index = 75 intrinsic curvature index = 7.5 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:47:02 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.yMT3op/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.yMT3op/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.yMT3op/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.yMT3op/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.yMT3op/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.yMT3op/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.yMT3op/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.yMT3op/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/tmp.yMT3op/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2786 values in range Counting number of voxels in first frame Found 2785 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2785 2785.000000 147136 1.892807 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -22.66 -36.98 64.70 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 2786 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2786 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2786 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label 14221 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyc_avg16_syn_bbr/endpt2.surf.label" number of vertices = 8405 total surface area = 5264 mm^2 total gray matter volume = 16261 mm^3 average cortical thickness = 2.895 mm +- 0.666 mm average integrated rectified mean curvature = 0.102 average integrated rectified Gaussian curvature = 0.019 folding index = 63 intrinsic curvature index = 6.5 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path cc.bodyp --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path cc.bodyp --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: cc.bodyp Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr... Done in 0.468 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:47:14 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.6fOFmw/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.6fOFmw/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.6fOFmw/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.6fOFmw/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.6fOFmw/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.6fOFmw/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.6fOFmw/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.6fOFmw/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.6fOFmw/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2154 values in range Counting number of voxels in first frame Found 2153 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2153 2153.000000 143986 1.495284 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 15.85 -60.78 43.02 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 2154 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2154 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2154 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label 17039 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt1.surf.label" number of vertices = 8231 total surface area = 5378 mm^2 total gray matter volume = 14756 mm^3 average cortical thickness = 2.651 mm +- 0.490 mm average integrated rectified mean curvature = 0.111 average integrated rectified Gaussian curvature = 0.021 folding index = 86 intrinsic curvature index = 6.9 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:47:25 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.G7iPMl/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.G7iPMl/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.G7iPMl/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.G7iPMl/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.G7iPMl/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.G7iPMl/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.G7iPMl/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.G7iPMl/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/tmp.G7iPMl/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3825 values in range Counting number of voxels in first frame Found 3824 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3824 3824.000000 147136 2.598956 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -19.48 -65.09 42.96 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 3825 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3825 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3825 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label 18962 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyp_avg16_syn_bbr/endpt2.surf.label" number of vertices = 10558 total surface area = 6819 mm^2 total gray matter volume = 20915 mm^3 average cortical thickness = 2.819 mm +- 0.473 mm average integrated rectified mean curvature = 0.119 average integrated rectified Gaussian curvature = 0.022 folding index = 124 intrinsic curvature index = 9.6 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path cc.bodypf --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path cc.bodypf --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: cc.bodypf Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr... Done in 0.487 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:47:36 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.4wdG6x/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.4wdG6x/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.4wdG6x/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.4wdG6x/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.4wdG6x/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.4wdG6x/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.4wdG6x/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.4wdG6x/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.4wdG6x/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2203 values in range Counting number of voxels in first frame Found 2202 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2202 2202.000000 143986 1.529315 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 17.12 21.23 55.46 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 2203 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2203 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2203 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label 14194 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt1.surf.label" number of vertices = 7869 total surface area = 5186 mm^2 total gray matter volume = 17195 mm^3 average cortical thickness = 3.087 mm +- 0.637 mm average integrated rectified mean curvature = 0.124 average integrated rectified Gaussian curvature = 0.028 folding index = 93 intrinsic curvature index = 8.7 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:47:47 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.eSinnn/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.eSinnn/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.eSinnn/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.eSinnn/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.eSinnn/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.eSinnn/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.eSinnn/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.eSinnn/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/tmp.eSinnn/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1645 values in range Counting number of voxels in first frame Found 1644 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 1644 1644.000000 147136 1.117334 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -22.36 18.39 52.35 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 1645 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1645 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1645 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label 13673 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypf_avg16_syn_bbr/endpt2.surf.label" number of vertices = 7069 total surface area = 4690 mm^2 total gray matter volume = 16327 mm^3 average cortical thickness = 3.157 mm +- 0.608 mm average integrated rectified mean curvature = 0.122 average integrated rectified Gaussian curvature = 0.027 folding index = 86 intrinsic curvature index = 8.0 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path cc.bodypm --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path cc.bodypm --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: cc.bodypm Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr... Done in 0.505 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:47:59 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.uwH0yv/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.uwH0yv/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.uwH0yv/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.uwH0yv/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.uwH0yv/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.uwH0yv/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.uwH0yv/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.uwH0yv/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.uwH0yv/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2880 values in range Counting number of voxels in first frame Found 2879 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2879 2879.000000 143986 1.999500 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 13.35 -3.73 64.53 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 2880 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2880 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2880 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label 12528 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt1.surf.label" number of vertices = 8260 total surface area = 5487 mm^2 total gray matter volume = 19835 mm^3 average cortical thickness = 3.223 mm +- 0.601 mm average integrated rectified mean curvature = 0.114 average integrated rectified Gaussian curvature = 0.023 folding index = 84 intrinsic curvature index = 7.6 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:48:09 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.jQbotd/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.jQbotd/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.jQbotd/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.jQbotd/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.jQbotd/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.jQbotd/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.jQbotd/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.jQbotd/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/tmp.jQbotd/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2915 values in range Counting number of voxels in first frame Found 2914 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2914 2914.000000 147136 1.980481 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -19.00 -4.82 64.98 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 2915 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2915 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2915 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label 12943 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodypm_avg16_syn_bbr/endpt2.surf.label" number of vertices = 8594 total surface area = 5745 mm^2 total gray matter volume = 21355 mm^3 average cortical thickness = 3.247 mm +- 0.589 mm average integrated rectified mean curvature = 0.115 average integrated rectified Gaussian curvature = 0.022 folding index = 87 intrinsic curvature index = 7.9 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path cc.bodyt --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path cc.bodyt --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: cc.bodyt Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr... Done in 0.536 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:48:21 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.WunntW/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.WunntW/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.WunntW/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.WunntW/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.WunntW/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.WunntW/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.WunntW/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.WunntW/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.WunntW/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2404 values in range Counting number of voxels in first frame Found 2403 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2403 2403.000000 143986 1.668912 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 51.52 -21.63 18.26 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 2404 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2404 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2404 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label 11298 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt1.surf.label" number of vertices = 6290 total surface area = 3960 mm^2 total gray matter volume = 16833 mm^3 average cortical thickness = 3.505 mm +- 0.643 mm average integrated rectified mean curvature = 0.108 average integrated rectified Gaussian curvature = 0.023 folding index = 70 intrinsic curvature index = 5.7 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:48:32 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.rswINI/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.rswINI/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.rswINI/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.rswINI/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.rswINI/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.rswINI/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.rswINI/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.rswINI/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/tmp.rswINI/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2851 values in range Counting number of voxels in first frame Found 2850 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2850 2850.000000 147136 1.936983 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -50.69 -34.45 7.05 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 2851 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2851 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2851 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label 15037 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.bodyt_avg16_syn_bbr/endpt2.surf.label" number of vertices = 8979 total surface area = 5700 mm^2 total gray matter volume = 20905 mm^3 average cortical thickness = 3.165 mm +- 0.614 mm average integrated rectified mean curvature = 0.109 average integrated rectified Gaussian curvature = 0.023 folding index = 105 intrinsic curvature index = 8.5 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path cc.genu --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path cc.genu --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: cc.genu Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr... Done in 0.513 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:48:44 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.OmS7Ix/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.OmS7Ix/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.OmS7Ix/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.OmS7Ix/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.OmS7Ix/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.OmS7Ix/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.OmS7Ix/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.OmS7Ix/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.OmS7Ix/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2476 values in range Counting number of voxels in first frame Found 2475 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2475 2475.000000 143986 1.718917 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 22.84 43.36 35.70 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 2476 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2476 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2476 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label 12771 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label" number of vertices = 7623 total surface area = 5094 mm^2 total gray matter volume = 16331 mm^3 average cortical thickness = 2.872 mm +- 0.588 mm average integrated rectified mean curvature = 0.135 average integrated rectified Gaussian curvature = 0.034 folding index = 116 intrinsic curvature index = 10.6 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:48:54 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.Ib3iXj/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.Ib3iXj/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.Ib3iXj/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.Ib3iXj/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.Ib3iXj/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.Ib3iXj/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.Ib3iXj/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.Ib3iXj/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.Ib3iXj/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2697 values in range Counting number of voxels in first frame Found 2696 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2696 2696.000000 147136 1.832318 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -21.56 38.08 39.60 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 2697 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2697 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2697 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label 14119 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label" number of vertices = 8341 total surface area = 5511 mm^2 total gray matter volume = 17997 mm^3 average cortical thickness = 2.995 mm +- 0.562 mm average integrated rectified mean curvature = 0.128 average integrated rectified Gaussian curvature = 0.029 folding index = 113 intrinsic curvature index = 9.6 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path cc.rostrum --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path cc.rostrum --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: cc.rostrum Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr... Done in 0.451 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:49:06 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.trTMl3/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.trTMl3/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.trTMl3/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.trTMl3/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.trTMl3/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.trTMl3/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.trTMl3/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.trTMl3/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.trTMl3/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2267 values in range Counting number of voxels in first frame Found 2266 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2266 2266.000000 143986 1.573764 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 13.42 50.17 26.20 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 2267 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2267 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2267 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label 7579 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt1.surf.label" number of vertices = 5341 total surface area = 3685 mm^2 total gray matter volume = 13323 mm^3 average cortical thickness = 2.996 mm +- 0.665 mm average integrated rectified mean curvature = 0.149 average integrated rectified Gaussian curvature = 0.038 folding index = 108 intrinsic curvature index = 8.8 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:49:17 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.pmmXVF/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.pmmXVF/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.pmmXVF/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.pmmXVF/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.pmmXVF/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.pmmXVF/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.pmmXVF/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.pmmXVF/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/tmp.pmmXVF/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2355 values in range Counting number of voxels in first frame Found 2354 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2354 2354.000000 147136 1.599880 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -15.56 50.57 25.27 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 2355 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2355 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2355 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label 7675 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.rostrum_avg16_syn_bbr/endpt2.surf.label" number of vertices = 5067 total surface area = 3398 mm^2 total gray matter volume = 12261 mm^3 average cortical thickness = 3.021 mm +- 0.608 mm average integrated rectified mean curvature = 0.141 average integrated rectified Gaussian curvature = 0.035 folding index = 96 intrinsic curvature index = 7.3 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path cc.splenium --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path cc.splenium --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: cc.splenium Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr... Done in 0.511 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:49:28 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.sZNKre/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.sZNKre/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.sZNKre/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.sZNKre/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.sZNKre/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.sZNKre/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.sZNKre/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.sZNKre/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.sZNKre/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3594 values in range Counting number of voxels in first frame Found 3593 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3593 3593.000000 143986 2.495381 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 17.26 -82.94 26.27 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 3594 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3594 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3594 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label 15665 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt1.surf.label" number of vertices = 10058 total surface area = 6434 mm^2 total gray matter volume = 17713 mm^3 average cortical thickness = 2.526 mm +- 0.565 mm average integrated rectified mean curvature = 0.125 average integrated rectified Gaussian curvature = 0.026 folding index = 127 intrinsic curvature index = 10.5 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:49:39 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.QQFNht/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.QQFNht/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.QQFNht/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.QQFNht/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.QQFNht/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.QQFNht/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.QQFNht/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.QQFNht/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/tmp.QQFNht/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3539 values in range Counting number of voxels in first frame Found 3538 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3538 3538.000000 147136 2.404578 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -23.52 -85.52 20.51 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 3539 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3539 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3539 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label 16955 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.splenium_avg16_syn_bbr/endpt2.surf.label" number of vertices = 10185 total surface area = 6418 mm^2 total gray matter volume = 16800 mm^3 average cortical thickness = 2.466 mm +- 0.543 mm average integrated rectified mean curvature = 0.123 average integrated rectified Gaussian curvature = 0.024 folding index = 126 intrinsic curvature index = 10.1 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/mcp_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path mcp --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/mcp_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/mcp_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/mcp_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path mcp --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/mcp_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/mcp_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/mcp_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: mcp Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/mcp_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/mcp_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/mcp_avg16_syn_bbr... Done in 0.505 sec. dmri_pathstats done /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.af --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.af --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: lh.af Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr... Done in 0.452 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:49:52 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.1zSxBZ/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.1zSxBZ/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.1zSxBZ/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.1zSxBZ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.1zSxBZ/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.1zSxBZ/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.1zSxBZ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.1zSxBZ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.1zSxBZ/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3606 values in range Counting number of voxels in first frame Found 3605 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3605 3605.000000 147136 2.450114 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -35.03 19.94 36.63 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 3606 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3606 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3606 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label 18381 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt1.surf.label" number of vertices = 10656 total surface area = 7010 mm^2 total gray matter volume = 21823 mm^3 average cortical thickness = 2.969 mm +- 0.555 mm average integrated rectified mean curvature = 0.122 average integrated rectified Gaussian curvature = 0.027 folding index = 145 intrinsic curvature index = 11.0 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:50:04 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.tuCEpI/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.tuCEpI/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.tuCEpI/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.tuCEpI/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.tuCEpI/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.tuCEpI/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.tuCEpI/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.tuCEpI/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/tmp.tuCEpI/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 4166 values in range Counting number of voxels in first frame Found 4165 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 4165 4165.000000 147136 2.830714 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -48.90 -43.77 5.15 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 4166 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 4166 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 4166 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label 18117 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.af_avg16_syn_bbr/endpt2.surf.label" number of vertices = 10757 total surface area = 7036 mm^2 total gray matter volume = 22410 mm^3 average cortical thickness = 3.036 mm +- 0.584 mm average integrated rectified mean curvature = 0.109 average integrated rectified Gaussian curvature = 0.021 folding index = 114 intrinsic curvature index = 9.1 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path rh.af --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path rh.af --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: rh.af Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr... Done in 0.501 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:50:17 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.k0eQav/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.k0eQav/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.k0eQav/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.k0eQav/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.k0eQav/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.k0eQav/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.k0eQav/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.k0eQav/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.k0eQav/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3594 values in range Counting number of voxels in first frame Found 3593 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3593 3593.000000 143986 2.495381 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 31.79 25.04 39.20 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 3594 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3594 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3594 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label 17798 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt1.surf.label" number of vertices = 10294 total surface area = 6817 mm^2 total gray matter volume = 20530 mm^3 average cortical thickness = 2.934 mm +- 0.560 mm average integrated rectified mean curvature = 0.125 average integrated rectified Gaussian curvature = 0.027 folding index = 138 intrinsic curvature index = 10.9 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:50:29 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.gQxcnU/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.gQxcnU/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.gQxcnU/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.gQxcnU/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.gQxcnU/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.gQxcnU/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.gQxcnU/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.gQxcnU/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/tmp.gQxcnU/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3712 values in range Counting number of voxels in first frame Found 3711 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3711 3711.000000 143986 2.577334 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 42.47 -51.63 14.73 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 3712 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3712 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3712 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label 19338 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.af_avg16_syn_bbr/endpt2.surf.label" number of vertices = 9921 total surface area = 6518 mm^2 total gray matter volume = 20119 mm^3 average cortical thickness = 3.052 mm +- 0.608 mm average integrated rectified mean curvature = 0.114 average integrated rectified Gaussian curvature = 0.022 folding index = 105 intrinsic curvature index = 8.7 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.ar --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.ar --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: lh.ar Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr... Done in 0.511 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:50:40 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/tmp.kwyh9u/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/tmp.kwyh9u/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/tmp.kwyh9u/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/tmp.kwyh9u/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/tmp.kwyh9u/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/tmp.kwyh9u/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/tmp.kwyh9u/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/tmp.kwyh9u/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/tmp.kwyh9u/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1155 values in range Counting number of voxels in first frame Found 1154 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 1154 1154.000000 147136 0.784308 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -52.08 -22.96 17.45 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 1155 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1155 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1155 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label 3670 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ar_avg16_syn_bbr/endpt2.surf.label" number of vertices = 1706 total surface area = 1073 mm^2 total gray matter volume = 3931 mm^3 average cortical thickness = 3.220 mm +- 0.549 mm average integrated rectified mean curvature = 0.105 average integrated rectified Gaussian curvature = 0.021 folding index = 18 intrinsic curvature index = 1.5 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path rh.ar --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path rh.ar --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: rh.ar Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr... Done in 0.431 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:50:52 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/tmp.YGoFcP/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/tmp.YGoFcP/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/tmp.YGoFcP/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/tmp.YGoFcP/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/tmp.YGoFcP/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/tmp.YGoFcP/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/tmp.YGoFcP/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/tmp.YGoFcP/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/tmp.YGoFcP/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1167 values in range Counting number of voxels in first frame Found 1166 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 1166 1166.000000 143986 0.809801 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 52.68 -16.52 19.62 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 1167 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1167 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1167 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label 4142 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ar_avg16_syn_bbr/endpt2.surf.label" number of vertices = 2154 total surface area = 1301 mm^2 total gray matter volume = 6566 mm^3 average cortical thickness = 3.794 mm +- 0.641 mm average integrated rectified mean curvature = 0.119 average integrated rectified Gaussian curvature = 0.024 folding index = 25 intrinsic curvature index = 2.3 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.atr --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.atr --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: lh.atr Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr... Done in 0.495 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:51:03 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/tmp.Ec8dm4/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/tmp.Ec8dm4/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/tmp.Ec8dm4/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/tmp.Ec8dm4/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/tmp.Ec8dm4/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/tmp.Ec8dm4/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/tmp.Ec8dm4/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/tmp.Ec8dm4/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/tmp.Ec8dm4/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1940 values in range Counting number of voxels in first frame Found 1939 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 1939 1939.000000 147136 1.317828 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -16.79 47.48 34.55 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 1940 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1940 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1940 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label 11169 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.atr_avg16_syn_bbr/endpt1.surf.label" number of vertices = 5683 total surface area = 3820 mm^2 total gray matter volume = 12591 mm^3 average cortical thickness = 2.970 mm +- 0.594 mm average integrated rectified mean curvature = 0.132 average integrated rectified Gaussian curvature = 0.031 folding index = 83 intrinsic curvature index = 7.0 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path rh.atr --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path rh.atr --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: rh.atr Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr... Done in 0.487 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:51:14 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/tmp.WO8zeB/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/tmp.WO8zeB/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/tmp.WO8zeB/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/tmp.WO8zeB/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/tmp.WO8zeB/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/tmp.WO8zeB/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/tmp.WO8zeB/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/tmp.WO8zeB/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/tmp.WO8zeB/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2321 values in range Counting number of voxels in first frame Found 2320 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2320 2320.000000 143986 1.611268 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 19.98 44.14 37.25 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 2321 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2321 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2321 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label 11243 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.atr_avg16_syn_bbr/endpt1.surf.label" number of vertices = 6628 total surface area = 4436 mm^2 total gray matter volume = 13946 mm^3 average cortical thickness = 2.829 mm +- 0.592 mm average integrated rectified mean curvature = 0.133 average integrated rectified Gaussian curvature = 0.032 folding index = 93 intrinsic curvature index = 8.6 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.cbd --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.cbd --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: lh.cbd Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr... Done in 0.504 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:51:26 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.oVGMSU/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.oVGMSU/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.oVGMSU/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.oVGMSU/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.oVGMSU/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.oVGMSU/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.oVGMSU/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.oVGMSU/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.oVGMSU/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1484 values in range Counting number of voxels in first frame Found 1483 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 1483 1483.000000 147136 1.007911 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -11.67 15.45 46.71 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 1484 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1484 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1484 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label 8236 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt1.surf.label" number of vertices = 3906 total surface area = 2579 mm^2 total gray matter volume = 8484 mm^3 average cortical thickness = 3.205 mm +- 0.743 mm average integrated rectified mean curvature = 0.119 average integrated rectified Gaussian curvature = 0.025 folding index = 39 intrinsic curvature index = 4.0 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:51:36 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.7FAJln/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.7FAJln/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.7FAJln/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.7FAJln/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.7FAJln/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.7FAJln/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.7FAJln/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.7FAJln/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/tmp.7FAJln/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1781 values in range Counting number of voxels in first frame Found 1780 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 1780 1780.000000 147136 1.209765 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -15.14 -56.49 27.09 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 1781 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1781 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1781 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label 8305 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbd_avg16_syn_bbr/endpt2.surf.label" number of vertices = 3557 total surface area = 2327 mm^2 total gray matter volume = 6335 mm^3 average cortical thickness = 2.863 mm +- 0.671 mm average integrated rectified mean curvature = 0.130 average integrated rectified Gaussian curvature = 0.028 folding index = 45 intrinsic curvature index = 4.2 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path rh.cbd --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path rh.cbd --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: rh.cbd Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr... Done in 0.57 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:51:48 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.bbcSyV/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.bbcSyV/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.bbcSyV/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.bbcSyV/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.bbcSyV/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.bbcSyV/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.bbcSyV/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.bbcSyV/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.bbcSyV/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1630 values in range Counting number of voxels in first frame Found 1629 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 1629 1629.000000 143986 1.131360 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 10.56 15.71 49.92 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 1630 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1630 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1630 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label 10979 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt1.surf.label" number of vertices = 4959 total surface area = 3279 mm^2 total gray matter volume = 10945 mm^3 average cortical thickness = 3.153 mm +- 0.776 mm average integrated rectified mean curvature = 0.132 average integrated rectified Gaussian curvature = 0.031 folding index = 62 intrinsic curvature index = 6.4 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:51:58 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.JL9Dgf/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.JL9Dgf/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.JL9Dgf/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.JL9Dgf/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.JL9Dgf/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.JL9Dgf/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.JL9Dgf/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.JL9Dgf/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/tmp.JL9Dgf/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2325 values in range Counting number of voxels in first frame Found 2324 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2324 2324.000000 143986 1.614046 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 8.50 -58.17 30.07 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 2325 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2325 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2325 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label 8231 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbd_avg16_syn_bbr/endpt2.surf.label" number of vertices = 4324 total surface area = 2764 mm^2 total gray matter volume = 8312 mm^3 average cortical thickness = 2.848 mm +- 0.644 mm average integrated rectified mean curvature = 0.127 average integrated rectified Gaussian curvature = 0.030 folding index = 55 intrinsic curvature index = 5.1 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.cbv --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.cbv --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: lh.cbv Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr... Done in 0.632 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:52:10 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.Sc9jux/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.Sc9jux/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.Sc9jux/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.Sc9jux/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.Sc9jux/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.Sc9jux/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.Sc9jux/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.Sc9jux/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.Sc9jux/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1784 values in range Counting number of voxels in first frame Found 1783 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 1783 1783.000000 147136 1.211804 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -17.66 -68.91 38.28 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 1784 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1784 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1784 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label 6939 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label" number of vertices = 3686 total surface area = 2407 mm^2 total gray matter volume = 6782 mm^3 average cortical thickness = 2.817 mm +- 0.407 mm average integrated rectified mean curvature = 0.114 average integrated rectified Gaussian curvature = 0.021 folding index = 39 intrinsic curvature index = 2.7 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:52:21 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.HIHQkv/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.HIHQkv/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.HIHQkv/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.HIHQkv/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.HIHQkv/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.HIHQkv/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.HIHQkv/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.HIHQkv/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.HIHQkv/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1025 values in range Counting number of voxels in first frame Found 1024 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 1024 1024.000000 147136 0.695955 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -23.82 -36.54 0.31 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 1025 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1025 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1025 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label 3647 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label" number of vertices = 1697 total surface area = 1137 mm^2 total gray matter volume = 2637 mm^3 average cortical thickness = 2.746 mm +- 1.067 mm average integrated rectified mean curvature = 0.107 average integrated rectified Gaussian curvature = 0.025 folding index = 19 intrinsic curvature index = 1.5 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path rh.cbv --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path rh.cbv --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: rh.cbv Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr... Done in 0.589 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:52:32 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.cEqALS/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.cEqALS/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.cEqALS/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.cEqALS/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.cEqALS/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.cEqALS/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.cEqALS/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.cEqALS/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.cEqALS/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2250 values in range Counting number of voxels in first frame Found 2249 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2249 2249.000000 143986 1.561957 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 7.71 -68.78 34.75 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 2250 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2250 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2250 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label 8033 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt1.surf.label" number of vertices = 4397 total surface area = 2862 mm^2 total gray matter volume = 8318 mm^3 average cortical thickness = 2.674 mm +- 0.537 mm average integrated rectified mean curvature = 0.115 average integrated rectified Gaussian curvature = 0.022 folding index = 48 intrinsic curvature index = 4.1 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:52:42 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.RvVQDn/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.RvVQDn/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.RvVQDn/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.RvVQDn/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.RvVQDn/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.RvVQDn/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.RvVQDn/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.RvVQDn/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/tmp.RvVQDn/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1815 values in range Counting number of voxels in first frame Found 1814 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 1814 1814.000000 143986 1.259845 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 23.86 -28.88 -0.38 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 1815 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1815 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1815 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label 6208 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cbv_avg16_syn_bbr/endpt2.surf.label" number of vertices = 3652 total surface area = 2465 mm^2 total gray matter volume = 5544 mm^3 average cortical thickness = 2.951 mm +- 1.093 mm average integrated rectified mean curvature = 0.114 average integrated rectified Gaussian curvature = 0.026 folding index = 41 intrinsic curvature index = 3.7 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.cst --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.cst --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: lh.cst Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr... Done in 0.511 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:52:53 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.B7BIMv/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.B7BIMv/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.B7BIMv/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.B7BIMv/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.B7BIMv/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.B7BIMv/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.B7BIMv/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.B7BIMv/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.B7BIMv/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1606 values in range Counting number of voxels in first frame Found 1605 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 1605 1605.000000 147136 1.090828 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -17.32 -27.54 65.11 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 1606 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1606 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1606 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label 13882 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label" number of vertices = 6149 total surface area = 3963 mm^2 total gray matter volume = 12086 mm^3 average cortical thickness = 2.970 mm +- 0.567 mm average integrated rectified mean curvature = 0.104 average integrated rectified Gaussian curvature = 0.018 folding index = 45 intrinsic curvature index = 4.6 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path rh.cst --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path rh.cst --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: rh.cst Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr... Done in 0.495 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:53:05 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/tmp.8gPuOp/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/tmp.8gPuOp/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/tmp.8gPuOp/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/tmp.8gPuOp/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/tmp.8gPuOp/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/tmp.8gPuOp/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/tmp.8gPuOp/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/tmp.8gPuOp/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/tmp.8gPuOp/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2173 values in range Counting number of voxels in first frame Found 2172 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2172 2172.000000 143986 1.508480 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 10.35 -32.19 67.46 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 2173 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2173 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2173 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label 11809 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.cst_avg16_syn_bbr/endpt1.surf.label" number of vertices = 6398 total surface area = 4201 mm^2 total gray matter volume = 14418 mm^3 average cortical thickness = 3.076 mm +- 0.697 mm average integrated rectified mean curvature = 0.106 average integrated rectified Gaussian curvature = 0.020 folding index = 55 intrinsic curvature index = 5.1 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.emc --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.emc --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: lh.emc Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr... Done in 0.495 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:53:16 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.X83K6U/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.X83K6U/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.X83K6U/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.X83K6U/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.X83K6U/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.X83K6U/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.X83K6U/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.X83K6U/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.X83K6U/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2941 values in range Counting number of voxels in first frame Found 2940 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2940 2940.000000 147136 1.998151 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -34.06 31.88 20.51 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 2941 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2941 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2941 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label 8581 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt1.surf.label" number of vertices = 6165 total surface area = 4124 mm^2 total gray matter volume = 14484 mm^3 average cortical thickness = 3.064 mm +- 0.589 mm average integrated rectified mean curvature = 0.129 average integrated rectified Gaussian curvature = 0.027 folding index = 88 intrinsic curvature index = 6.6 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:53:27 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.iZAfYK/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.iZAfYK/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.iZAfYK/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.iZAfYK/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.iZAfYK/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.iZAfYK/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.iZAfYK/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.iZAfYK/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/tmp.iZAfYK/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2773 values in range Counting number of voxels in first frame Found 2772 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2772 2772.000000 147136 1.883971 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -52.16 -27.87 -0.90 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 2773 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2773 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2773 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label 9644 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.emc_avg16_syn_bbr/endpt2.surf.label" number of vertices = 5751 total surface area = 3736 mm^2 total gray matter volume = 13546 mm^3 average cortical thickness = 3.149 mm +- 0.664 mm average integrated rectified mean curvature = 0.117 average integrated rectified Gaussian curvature = 0.025 folding index = 79 intrinsic curvature index = 5.5 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path rh.emc --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path rh.emc --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: rh.emc Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr... Done in 0.489 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:53:39 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.Bu9oXf/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.Bu9oXf/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.Bu9oXf/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.Bu9oXf/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.Bu9oXf/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.Bu9oXf/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.Bu9oXf/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.Bu9oXf/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.Bu9oXf/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2874 values in range Counting number of voxels in first frame Found 2873 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2873 2873.000000 143986 1.995333 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 34.00 35.64 21.01 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 2874 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2874 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2874 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label 6952 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt1.surf.label" number of vertices = 4749 total surface area = 3057 mm^2 total gray matter volume = 12066 mm^3 average cortical thickness = 3.202 mm +- 0.604 mm average integrated rectified mean curvature = 0.134 average integrated rectified Gaussian curvature = 0.030 folding index = 74 intrinsic curvature index = 5.5 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:53:50 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.bANqIl/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.bANqIl/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.bANqIl/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.bANqIl/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.bANqIl/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.bANqIl/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.bANqIl/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.bANqIl/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/tmp.bANqIl/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2818 values in range Counting number of voxels in first frame Found 2817 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2817 2817.000000 143986 1.956440 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 48.47 -32.07 4.98 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 2818 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2818 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2818 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label 10860 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.emc_avg16_syn_bbr/endpt2.surf.label" number of vertices = 6387 total surface area = 4238 mm^2 total gray matter volume = 15720 mm^3 average cortical thickness = 3.302 mm +- 0.721 mm average integrated rectified mean curvature = 0.114 average integrated rectified Gaussian curvature = 0.023 folding index = 66 intrinsic curvature index = 6.4 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.fat --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.fat --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: lh.fat Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr... Done in 0.489 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:54:02 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.KiN8o2/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.KiN8o2/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.KiN8o2/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.KiN8o2/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.KiN8o2/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.KiN8o2/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.KiN8o2/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.KiN8o2/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.KiN8o2/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2382 values in range Counting number of voxels in first frame Found 2381 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2381 2381.000000 147136 1.618231 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -16.37 0.23 62.82 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 2382 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2382 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2382 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label 11083 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt1.surf.label" number of vertices = 6669 total surface area = 4467 mm^2 total gray matter volume = 15934 mm^3 average cortical thickness = 3.233 mm +- 0.577 mm average integrated rectified mean curvature = 0.116 average integrated rectified Gaussian curvature = 0.024 folding index = 72 intrinsic curvature index = 6.5 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:54:13 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.OBt8Ds/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.OBt8Ds/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.OBt8Ds/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.OBt8Ds/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.OBt8Ds/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.OBt8Ds/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.OBt8Ds/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.OBt8Ds/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/tmp.OBt8Ds/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2013 values in range Counting number of voxels in first frame Found 2012 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2012 2012.000000 147136 1.367442 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -41.61 6.78 30.61 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 2013 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2013 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2013 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label 6163 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fat_avg16_syn_bbr/endpt2.surf.label" number of vertices = 3351 total surface area = 2192 mm^2 total gray matter volume = 7661 mm^3 average cortical thickness = 3.133 mm +- 0.549 mm average integrated rectified mean curvature = 0.115 average integrated rectified Gaussian curvature = 0.027 folding index = 46 intrinsic curvature index = 3.2 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path rh.fat --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path rh.fat --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: rh.fat Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr... Done in 0.451 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:54:24 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.nBpXTC/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.nBpXTC/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.nBpXTC/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.nBpXTC/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.nBpXTC/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.nBpXTC/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.nBpXTC/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.nBpXTC/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.nBpXTC/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3188 values in range Counting number of voxels in first frame Found 3187 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3187 3187.000000 143986 2.213410 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 10.46 4.29 63.83 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 3188 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3188 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3188 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label 11211 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt1.surf.label" number of vertices = 7862 total surface area = 5183 mm^2 total gray matter volume = 19530 mm^3 average cortical thickness = 3.290 mm +- 0.630 mm average integrated rectified mean curvature = 0.118 average integrated rectified Gaussian curvature = 0.025 folding index = 89 intrinsic curvature index = 7.8 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:54:35 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.doxnC6/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.doxnC6/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.doxnC6/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.doxnC6/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.doxnC6/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.doxnC6/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.doxnC6/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.doxnC6/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/tmp.doxnC6/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2574 values in range Counting number of voxels in first frame Found 2573 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2573 2573.000000 143986 1.786979 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 40.67 5.19 34.16 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 2574 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2574 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2574 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label 8102 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fat_avg16_syn_bbr/endpt2.surf.label" number of vertices = 5027 total surface area = 3406 mm^2 total gray matter volume = 11672 mm^3 average cortical thickness = 3.062 mm +- 0.523 mm average integrated rectified mean curvature = 0.121 average integrated rectified Gaussian curvature = 0.025 folding index = 64 intrinsic curvature index = 5.1 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.fx --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.fx --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: lh.fx Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr... Done in 0.466 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:54:46 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/tmp.oLrxxm/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/tmp.oLrxxm/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/tmp.oLrxxm/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/tmp.oLrxxm/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/tmp.oLrxxm/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/tmp.oLrxxm/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/tmp.oLrxxm/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/tmp.oLrxxm/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/tmp.oLrxxm/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3000 values in range Counting number of voxels in first frame Found 2999 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2999 2999.000000 147136 2.038250 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -33.76 5.19 -8.47 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 3000 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3000 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3000 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label 7947 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.fx_avg16_syn_bbr/endpt2.surf.label" number of vertices = 5336 total surface area = 3554 mm^2 total gray matter volume = 14665 mm^3 average cortical thickness = 3.522 mm +- 0.806 mm average integrated rectified mean curvature = 0.128 average integrated rectified Gaussian curvature = 0.041 folding index = 80 intrinsic curvature index = 8.6 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path rh.fx --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path rh.fx --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: rh.fx Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr... Done in 0.45 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:54:58 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.4nQm02/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.4nQm02/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.4nQm02/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.4nQm02/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.4nQm02/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.4nQm02/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.4nQm02/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.4nQm02/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.4nQm02/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3358 values in range Counting number of voxels in first frame Found 3357 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3357 3357.000000 143986 2.331477 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 33.91 3.62 -7.75 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 3358 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3358 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3358 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label 7436 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label" number of vertices = 5150 total surface area = 3359 mm^2 total gray matter volume = 14462 mm^3 average cortical thickness = 3.585 mm +- 0.903 mm average integrated rectified mean curvature = 0.128 average integrated rectified Gaussian curvature = 0.036 folding index = 72 intrinsic curvature index = 7.6 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.ilf --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.ilf --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: lh.ilf Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr... Done in 0.436 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:55:09 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.8EWWbG/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.8EWWbG/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.8EWWbG/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.8EWWbG/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.8EWWbG/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.8EWWbG/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.8EWWbG/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.8EWWbG/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.8EWWbG/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3390 values in range Counting number of voxels in first frame Found 3389 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3389 3389.000000 147136 2.303311 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -38.60 2.90 -5.24 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 3390 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3390 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3390 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label 9056 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt1.surf.label" number of vertices = 6405 total surface area = 4278 mm^2 total gray matter volume = 17881 mm^3 average cortical thickness = 3.564 mm +- 0.749 mm average integrated rectified mean curvature = 0.117 average integrated rectified Gaussian curvature = 0.030 folding index = 84 intrinsic curvature index = 7.5 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:55:20 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.gCUTkS/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.gCUTkS/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.gCUTkS/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.gCUTkS/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.gCUTkS/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.gCUTkS/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.gCUTkS/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.gCUTkS/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/tmp.gCUTkS/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3491 values in range Counting number of voxels in first frame Found 3490 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3490 3490.000000 147136 2.371955 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -26.89 -79.24 8.28 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 3491 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3491 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3491 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label 22722 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.ilf_avg16_syn_bbr/endpt2.surf.label" number of vertices = 12794 total surface area = 8224 mm^2 total gray matter volume = 19801 mm^3 average cortical thickness = 2.465 mm +- 0.577 mm average integrated rectified mean curvature = 0.134 average integrated rectified Gaussian curvature = 0.027 folding index = 161 intrinsic curvature index = 14.2 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path rh.ilf --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path rh.ilf --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: rh.ilf Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr... Done in 0.548 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:55:32 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.NFPmoF/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.NFPmoF/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.NFPmoF/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.NFPmoF/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.NFPmoF/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.NFPmoF/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.NFPmoF/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.NFPmoF/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.NFPmoF/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3136 values in range Counting number of voxels in first frame Found 3135 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 3135 3135.000000 143986 2.177295 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 39.71 0.58 -4.63 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 3136 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3136 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3136 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label 9592 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt1.surf.label" number of vertices = 7286 total surface area = 4784 mm^2 total gray matter volume = 21448 mm^3 average cortical thickness = 3.656 mm +- 0.795 mm average integrated rectified mean curvature = 0.119 average integrated rectified Gaussian curvature = 0.031 folding index = 91 intrinsic curvature index = 9.2 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:55:43 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.64lUUD/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.64lUUD/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.64lUUD/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.64lUUD/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.64lUUD/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.64lUUD/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.64lUUD/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.64lUUD/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/tmp.64lUUD/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3497 values in range Counting number of voxels in first frame Found 3496 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3496 3496.000000 143986 2.428014 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 18.60 -80.46 9.11 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 3497 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3497 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3497 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label 22738 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.ilf_avg16_syn_bbr/endpt2.surf.label" number of vertices = 13226 total surface area = 8401 mm^2 total gray matter volume = 20239 mm^3 average cortical thickness = 2.431 mm +- 0.578 mm average integrated rectified mean curvature = 0.129 average integrated rectified Gaussian curvature = 0.028 folding index = 150 intrinsic curvature index = 15.5 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.mlf --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.mlf --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: lh.mlf Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr... Done in 0.485 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:55:55 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.NBBHVb/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.NBBHVb/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.NBBHVb/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.NBBHVb/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.NBBHVb/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.NBBHVb/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.NBBHVb/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.NBBHVb/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.NBBHVb/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2473 values in range Counting number of voxels in first frame Found 2472 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2472 2472.000000 147136 1.680078 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -44.83 -0.04 3.44 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 2473 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2473 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2473 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label 7164 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt1.surf.label" number of vertices = 4473 total surface area = 2890 mm^2 total gray matter volume = 12850 mm^3 average cortical thickness = 3.625 mm +- 0.664 mm average integrated rectified mean curvature = 0.108 average integrated rectified Gaussian curvature = 0.024 folding index = 55 intrinsic curvature index = 4.3 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:56:06 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.j3wUk3/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.j3wUk3/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.j3wUk3/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.j3wUk3/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.j3wUk3/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.j3wUk3/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.j3wUk3/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.j3wUk3/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/tmp.j3wUk3/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2982 values in range Counting number of voxels in first frame Found 2981 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2981 2981.000000 147136 2.026017 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -25.85 -82.68 21.47 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 2982 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2982 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2982 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label 19219 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.mlf_avg16_syn_bbr/endpt2.surf.label" number of vertices = 10309 total surface area = 6520 mm^2 total gray matter volume = 16727 mm^3 average cortical thickness = 2.478 mm +- 0.547 mm average integrated rectified mean curvature = 0.121 average integrated rectified Gaussian curvature = 0.024 folding index = 124 intrinsic curvature index = 9.5 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path rh.mlf --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path rh.mlf --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: rh.mlf Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr... Done in 0.502 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:56:18 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.SaUCY4/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.SaUCY4/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.SaUCY4/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.SaUCY4/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.SaUCY4/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.SaUCY4/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.SaUCY4/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.SaUCY4/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.SaUCY4/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1483 values in range Counting number of voxels in first frame Found 1482 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 1482 1482.000000 143986 1.029267 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 49.17 -7.03 12.75 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 1483 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1483 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1483 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label 5493 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt1.surf.label" number of vertices = 2705 total surface area = 1705 mm^2 total gray matter volume = 7529 mm^3 average cortical thickness = 3.670 mm +- 0.662 mm average integrated rectified mean curvature = 0.106 average integrated rectified Gaussian curvature = 0.023 folding index = 28 intrinsic curvature index = 2.6 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:56:28 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.ZX5lDL/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.ZX5lDL/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.ZX5lDL/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.ZX5lDL/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.ZX5lDL/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.ZX5lDL/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.ZX5lDL/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.ZX5lDL/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/tmp.ZX5lDL/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2953 values in range Counting number of voxels in first frame Found 2952 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2952 2952.000000 143986 2.050199 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 18.64 -73.29 38.59 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 2953 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2953 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2953 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label 17926 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.mlf_avg16_syn_bbr/endpt2.surf.label" number of vertices = 10067 total surface area = 6538 mm^2 total gray matter volume = 17395 mm^3 average cortical thickness = 2.591 mm +- 0.478 mm average integrated rectified mean curvature = 0.110 average integrated rectified Gaussian curvature = 0.019 folding index = 101 intrinsic curvature index = 7.4 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.or --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.or --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: lh.or Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr... Done in 0.468 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:56:40 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/tmp.4Cymmb/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/tmp.4Cymmb/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/tmp.4Cymmb/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/tmp.4Cymmb/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/tmp.4Cymmb/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/tmp.4Cymmb/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/tmp.4Cymmb/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/tmp.4Cymmb/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/tmp.4Cymmb/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2796 values in range Counting number of voxels in first frame Found 2795 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2795 2795.000000 147136 1.899603 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -28.06 -82.61 10.58 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 2796 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2796 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2796 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label 15642 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.or_avg16_syn_bbr/endpt2.surf.label" number of vertices = 7809 total surface area = 5012 mm^2 total gray matter volume = 11929 mm^3 average cortical thickness = 2.472 mm +- 0.537 mm average integrated rectified mean curvature = 0.125 average integrated rectified Gaussian curvature = 0.023 folding index = 87 intrinsic curvature index = 7.2 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path rh.or --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path rh.or --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: rh.or Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr... Done in 0.484 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:56:51 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/tmp.o4gVLd/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/tmp.o4gVLd/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/tmp.o4gVLd/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/tmp.o4gVLd/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/tmp.o4gVLd/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/tmp.o4gVLd/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/tmp.o4gVLd/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/tmp.o4gVLd/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/tmp.o4gVLd/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2939 values in range Counting number of voxels in first frame Found 2938 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2938 2938.000000 143986 2.040476 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 13.98 -86.49 9.96 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 2939 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2939 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2939 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label 16014 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.or_avg16_syn_bbr/endpt2.surf.label" number of vertices = 9549 total surface area = 5981 mm^2 total gray matter volume = 14035 mm^3 average cortical thickness = 2.397 mm +- 0.545 mm average integrated rectified mean curvature = 0.131 average integrated rectified Gaussian curvature = 0.030 folding index = 112 intrinsic curvature index = 11.9 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.slf1 --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.slf1 --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: lh.slf1 Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr... Done in 0.441 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:57:03 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.pIbP91/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.pIbP91/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.pIbP91/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.pIbP91/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.pIbP91/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.pIbP91/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.pIbP91/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.pIbP91/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.pIbP91/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2985 values in range Counting number of voxels in first frame Found 2984 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2984 2984.000000 147136 2.028056 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -15.54 17.32 57.91 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 2985 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2985 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2985 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label 13461 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt1.surf.label" number of vertices = 9314 total surface area = 6294 mm^2 total gray matter volume = 23220 mm^3 average cortical thickness = 3.241 mm +- 0.598 mm average integrated rectified mean curvature = 0.121 average integrated rectified Gaussian curvature = 0.025 folding index = 113 intrinsic curvature index = 9.4 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:57:15 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.JpCb55/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.JpCb55/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.JpCb55/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.JpCb55/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.JpCb55/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.JpCb55/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.JpCb55/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.JpCb55/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/tmp.JpCb55/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3647 values in range Counting number of voxels in first frame Found 3646 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3646 3646.000000 147136 2.477980 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -15.57 -66.77 49.45 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 3647 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3647 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3647 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label 9665 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf1_avg16_syn_bbr/endpt2.surf.label" number of vertices = 6583 total surface area = 4261 mm^2 total gray matter volume = 14158 mm^3 average cortical thickness = 2.840 mm +- 0.469 mm average integrated rectified mean curvature = 0.125 average integrated rectified Gaussian curvature = 0.024 folding index = 95 intrinsic curvature index = 6.3 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path rh.slf1 --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path rh.slf1 --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: rh.slf1 Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr... Done in 0.516 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:57:28 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.409hfJ/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.409hfJ/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.409hfJ/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.409hfJ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.409hfJ/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.409hfJ/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.409hfJ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.409hfJ/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.409hfJ/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2684 values in range Counting number of voxels in first frame Found 2683 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2683 2683.000000 143986 1.863376 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 12.64 22.07 54.94 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 2684 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2684 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2684 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label 14195 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt1.surf.label" number of vertices = 8648 total surface area = 5732 mm^2 total gray matter volume = 19646 mm^3 average cortical thickness = 3.171 mm +- 0.653 mm average integrated rectified mean curvature = 0.123 average integrated rectified Gaussian curvature = 0.027 folding index = 100 intrinsic curvature index = 9.6 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:57:38 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.tM6vcp/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.tM6vcp/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.tM6vcp/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.tM6vcp/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.tM6vcp/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.tM6vcp/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.tM6vcp/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.tM6vcp/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/tmp.tM6vcp/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3114 values in range Counting number of voxels in first frame Found 3113 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3113 3113.000000 143986 2.162016 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 9.15 -61.71 53.29 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 3114 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3114 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3114 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label 10011 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf1_avg16_syn_bbr/endpt2.surf.label" number of vertices = 6567 total surface area = 4259 mm^2 total gray matter volume = 12426 mm^3 average cortical thickness = 2.632 mm +- 0.476 mm average integrated rectified mean curvature = 0.115 average integrated rectified Gaussian curvature = 0.020 folding index = 80 intrinsic curvature index = 5.3 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.slf2 --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.slf2 --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: lh.slf2 Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr... Done in 0.546 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:57:50 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.QQpynD/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.QQpynD/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.QQpynD/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.QQpynD/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.QQpynD/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.QQpynD/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.QQpynD/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.QQpynD/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.QQpynD/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2878 values in range Counting number of voxels in first frame Found 2877 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2877 2877.000000 147136 1.955334 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -27.39 28.63 40.37 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 2878 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2878 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2878 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label 16894 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt1.surf.label" number of vertices = 8274 total surface area = 5436 mm^2 total gray matter volume = 15545 mm^3 average cortical thickness = 2.884 mm +- 0.496 mm average integrated rectified mean curvature = 0.124 average integrated rectified Gaussian curvature = 0.028 folding index = 100 intrinsic curvature index = 9.5 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:58:01 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.3KT2w4/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.3KT2w4/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.3KT2w4/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.3KT2w4/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.3KT2w4/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.3KT2w4/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.3KT2w4/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.3KT2w4/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/tmp.3KT2w4/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3716 values in range Counting number of voxels in first frame Found 3715 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3715 3715.000000 147136 2.524875 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -39.43 -67.65 35.45 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 3716 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3716 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3716 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label 14762 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf2_avg16_syn_bbr/endpt2.surf.label" number of vertices = 9069 total surface area = 5914 mm^2 total gray matter volume = 18274 mm^3 average cortical thickness = 2.891 mm +- 0.529 mm average integrated rectified mean curvature = 0.113 average integrated rectified Gaussian curvature = 0.020 folding index = 99 intrinsic curvature index = 7.1 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path rh.slf2 --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path rh.slf2 --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: rh.slf2 Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr... Done in 0.514 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:58:13 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.rSQf2k/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.rSQf2k/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.rSQf2k/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.rSQf2k/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.rSQf2k/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.rSQf2k/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.rSQf2k/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.rSQf2k/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.rSQf2k/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2297 values in range Counting number of voxels in first frame Found 2296 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2296 2296.000000 143986 1.594599 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 26.97 23.90 45.46 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 2297 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2297 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2297 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label 14721 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt1.surf.label" number of vertices = 6971 total surface area = 4605 mm^2 total gray matter volume = 12934 mm^3 average cortical thickness = 2.834 mm +- 0.509 mm average integrated rectified mean curvature = 0.119 average integrated rectified Gaussian curvature = 0.025 folding index = 82 intrinsic curvature index = 7.5 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:58:24 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.JOw9MG/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.JOw9MG/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.JOw9MG/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.JOw9MG/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.JOw9MG/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.JOw9MG/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.JOw9MG/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.JOw9MG/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/tmp.JOw9MG/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3658 values in range Counting number of voxels in first frame Found 3657 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3657 3657.000000 143986 2.539830 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 32.13 -67.73 35.91 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 3658 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3658 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3658 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label 14836 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf2_avg16_syn_bbr/endpt2.surf.label" number of vertices = 8930 total surface area = 5838 mm^2 total gray matter volume = 17018 mm^3 average cortical thickness = 2.782 mm +- 0.509 mm average integrated rectified mean curvature = 0.109 average integrated rectified Gaussian curvature = 0.020 folding index = 92 intrinsic curvature index = 7.1 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.slf3 --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.slf3 --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: lh.slf3 Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr... Done in 0.432 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:58:37 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.nNLgL0/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.nNLgL0/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.nNLgL0/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.nNLgL0/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.nNLgL0/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.nNLgL0/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.nNLgL0/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.nNLgL0/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.nNLgL0/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2601 values in range Counting number of voxels in first frame Found 2600 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2600 2600.000000 147136 1.767073 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -35.23 21.16 34.35 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 2601 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2601 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2601 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label 12454 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt1.surf.label" number of vertices = 6915 total surface area = 4524 mm^2 total gray matter volume = 14309 mm^3 average cortical thickness = 3.004 mm +- 0.550 mm average integrated rectified mean curvature = 0.120 average integrated rectified Gaussian curvature = 0.026 folding index = 85 intrinsic curvature index = 7.0 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:58:48 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.wBvAdb/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.wBvAdb/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.wBvAdb/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.wBvAdb/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.wBvAdb/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.wBvAdb/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.wBvAdb/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.wBvAdb/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/tmp.wBvAdb/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3509 values in range Counting number of voxels in first frame Found 3508 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3508 3508.000000 147136 2.384189 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -46.29 -50.09 36.39 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 3509 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3509 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3509 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label 16728 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.slf3_avg16_syn_bbr/endpt2.surf.label" number of vertices = 10289 total surface area = 6756 mm^2 total gray matter volume = 21209 mm^3 average cortical thickness = 2.989 mm +- 0.544 mm average integrated rectified mean curvature = 0.108 average integrated rectified Gaussian curvature = 0.020 folding index = 98 intrinsic curvature index = 8.1 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path rh.slf3 --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path rh.slf3 --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: rh.slf3 Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr... Done in 0.428 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:59:00 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.s8yr6x/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.s8yr6x/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.s8yr6x/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.s8yr6x/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.s8yr6x/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.s8yr6x/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.s8yr6x/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.s8yr6x/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.s8yr6x/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2620 values in range Counting number of voxels in first frame Found 2619 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2619 2619.000000 143986 1.818927 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 35.45 17.89 35.60 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 2620 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2620 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2620 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label 12527 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt1.surf.label" number of vertices = 7078 total surface area = 4740 mm^2 total gray matter volume = 14773 mm^3 average cortical thickness = 2.967 mm +- 0.563 mm average integrated rectified mean curvature = 0.124 average integrated rectified Gaussian curvature = 0.025 folding index = 91 intrinsic curvature index = 7.3 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:59:11 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.xG7Qol/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.xG7Qol/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.xG7Qol/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.xG7Qol/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.xG7Qol/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.xG7Qol/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.xG7Qol/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.xG7Qol/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/tmp.xG7Qol/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2860 values in range Counting number of voxels in first frame Found 2859 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2859 2859.000000 143986 1.985610 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 38.60 -52.75 41.07 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 2860 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2860 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2860 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label 15227 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.slf3_avg16_syn_bbr/endpt2.surf.label" number of vertices = 7665 total surface area = 5024 mm^2 total gray matter volume = 14672 mm^3 average cortical thickness = 2.867 mm +- 0.514 mm average integrated rectified mean curvature = 0.111 average integrated rectified Gaussian curvature = 0.022 folding index = 77 intrinsic curvature index = 6.5 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.uf --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.uf --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: lh.uf Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr... Done in 0.589 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:59:22 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.JzPcuh/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.JzPcuh/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.JzPcuh/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.JzPcuh/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.JzPcuh/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.JzPcuh/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.JzPcuh/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.JzPcuh/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.JzPcuh/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2705 values in range Counting number of voxels in first frame Found 2704 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2704 2704.000000 147136 1.837756 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -14.60 49.54 24.92 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 2705 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2705 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2705 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label 8760 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt1.surf.label" number of vertices = 5715 total surface area = 3871 mm^2 total gray matter volume = 13230 mm^3 average cortical thickness = 2.987 mm +- 0.626 mm average integrated rectified mean curvature = 0.138 average integrated rectified Gaussian curvature = 0.033 folding index = 101 intrinsic curvature index = 7.6 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:59:34 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.hQhICH/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.hQhICH/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.hQhICH/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.hQhICH/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.hQhICH/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.hQhICH/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.hQhICH/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.hQhICH/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/tmp.hQhICH/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2803 values in range Counting number of voxels in first frame Found 2802 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2802 2802.000000 147136 1.904361 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -36.86 8.18 -6.04 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 2803 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2803 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2803 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label 5648 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.uf_avg16_syn_bbr/endpt2.surf.label" number of vertices = 4107 total surface area = 2716 mm^2 total gray matter volume = 13171 mm^3 average cortical thickness = 3.768 mm +- 0.691 mm average integrated rectified mean curvature = 0.125 average integrated rectified Gaussian curvature = 0.036 folding index = 65 intrinsic curvature index = 5.7 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path rh.uf --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path rh.uf --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: rh.uf Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr... Done in 0.463 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 17:59:46 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.Bl6qGs/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.Bl6qGs/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.Bl6qGs/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.Bl6qGs/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.Bl6qGs/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.Bl6qGs/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.Bl6qGs/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.Bl6qGs/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.Bl6qGs/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2051 values in range Counting number of voxels in first frame Found 2050 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2050 2050.000000 143986 1.423750 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 14.93 49.14 23.26 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 2051 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2051 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2051 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label 7735 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt1.surf.label" number of vertices = 4709 total surface area = 3270 mm^2 total gray matter volume = 11096 mm^3 average cortical thickness = 2.946 mm +- 0.683 mm average integrated rectified mean curvature = 0.147 average integrated rectified Gaussian curvature = 0.036 folding index = 88 intrinsic curvature index = 7.2 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 17:59:56 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.DI0s5M/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.DI0s5M/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.DI0s5M/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.DI0s5M/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.DI0s5M/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.DI0s5M/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.DI0s5M/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.DI0s5M/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/tmp.DI0s5M/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2864 values in range Counting number of voxels in first frame Found 2863 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2863 2863.000000 143986 1.988388 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 34.73 7.18 -5.22 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 2864 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2864 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2864 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label 6323 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.uf_avg16_syn_bbr/endpt2.surf.label" number of vertices = 4553 total surface area = 2960 mm^2 total gray matter volume = 14158 mm^3 average cortical thickness = 3.763 mm +- 0.725 mm average integrated rectified mean curvature = 0.124 average integrated rectified Gaussian curvature = 0.033 folding index = 60 intrinsic curvature index = 5.9 /usr/local/freesurfer/7.3.2//bin/dmri_mergepaths --indir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath --in acomm_avg16_syn_bbr/path.pd.nii.gz cc.bodyc_avg16_syn_bbr/path.pd.nii.gz cc.bodyp_avg16_syn_bbr/path.pd.nii.gz cc.bodypf_avg16_syn_bbr/path.pd.nii.gz cc.bodypm_avg16_syn_bbr/path.pd.nii.gz cc.bodyt_avg16_syn_bbr/path.pd.nii.gz cc.genu_avg16_syn_bbr/path.pd.nii.gz cc.rostrum_avg16_syn_bbr/path.pd.nii.gz cc.splenium_avg16_syn_bbr/path.pd.nii.gz lh.af_avg16_syn_bbr/path.pd.nii.gz lh.ar_avg16_syn_bbr/path.pd.nii.gz lh.atr_avg16_syn_bbr/path.pd.nii.gz lh.cbd_avg16_syn_bbr/path.pd.nii.gz lh.cbv_avg16_syn_bbr/path.pd.nii.gz lh.cst_avg16_syn_bbr/path.pd.nii.gz lh.emc_avg16_syn_bbr/path.pd.nii.gz lh.fat_avg16_syn_bbr/path.pd.nii.gz lh.fx_avg16_syn_bbr/path.pd.nii.gz lh.ilf_avg16_syn_bbr/path.pd.nii.gz lh.mlf_avg16_syn_bbr/path.pd.nii.gz lh.or_avg16_syn_bbr/path.pd.nii.gz lh.slf1_avg16_syn_bbr/path.pd.nii.gz lh.slf2_avg16_syn_bbr/path.pd.nii.gz lh.slf3_avg16_syn_bbr/path.pd.nii.gz lh.uf_avg16_syn_bbr/path.pd.nii.gz mcp_avg16_syn_bbr/path.pd.nii.gz rh.af_avg16_syn_bbr/path.pd.nii.gz rh.ar_avg16_syn_bbr/path.pd.nii.gz rh.atr_avg16_syn_bbr/path.pd.nii.gz rh.cbd_avg16_syn_bbr/path.pd.nii.gz rh.cbv_avg16_syn_bbr/path.pd.nii.gz rh.cst_avg16_syn_bbr/path.pd.nii.gz rh.emc_avg16_syn_bbr/path.pd.nii.gz rh.fat_avg16_syn_bbr/path.pd.nii.gz rh.fx_avg16_syn_bbr/path.pd.nii.gz rh.ilf_avg16_syn_bbr/path.pd.nii.gz rh.mlf_avg16_syn_bbr/path.pd.nii.gz rh.or_avg16_syn_bbr/path.pd.nii.gz rh.slf1_avg16_syn_bbr/path.pd.nii.gz rh.slf2_avg16_syn_bbr/path.pd.nii.gz rh.slf3_avg16_syn_bbr/path.pd.nii.gz rh.uf_avg16_syn_bbr/path.pd.nii.gz --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/merged_avg16_syn_bbr.mgz --ctab /usr/local/freesurfer/7.3.2//FreeSurferColorLUT.txt --thresh .2 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_mergepaths --indir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath --in acomm_avg16_syn_bbr/path.pd.nii.gz cc.bodyc_avg16_syn_bbr/path.pd.nii.gz cc.bodyp_avg16_syn_bbr/path.pd.nii.gz cc.bodypf_avg16_syn_bbr/path.pd.nii.gz cc.bodypm_avg16_syn_bbr/path.pd.nii.gz cc.bodyt_avg16_syn_bbr/path.pd.nii.gz cc.genu_avg16_syn_bbr/path.pd.nii.gz cc.rostrum_avg16_syn_bbr/path.pd.nii.gz cc.splenium_avg16_syn_bbr/path.pd.nii.gz lh.af_avg16_syn_bbr/path.pd.nii.gz lh.ar_avg16_syn_bbr/path.pd.nii.gz lh.atr_avg16_syn_bbr/path.pd.nii.gz lh.cbd_avg16_syn_bbr/path.pd.nii.gz lh.cbv_avg16_syn_bbr/path.pd.nii.gz lh.cst_avg16_syn_bbr/path.pd.nii.gz lh.emc_avg16_syn_bbr/path.pd.nii.gz lh.fat_avg16_syn_bbr/path.pd.nii.gz lh.fx_avg16_syn_bbr/path.pd.nii.gz lh.ilf_avg16_syn_bbr/path.pd.nii.gz lh.mlf_avg16_syn_bbr/path.pd.nii.gz lh.or_avg16_syn_bbr/path.pd.nii.gz lh.slf1_avg16_syn_bbr/path.pd.nii.gz lh.slf2_avg16_syn_bbr/path.pd.nii.gz lh.slf3_avg16_syn_bbr/path.pd.nii.gz lh.uf_avg16_syn_bbr/path.pd.nii.gz mcp_avg16_syn_bbr/path.pd.nii.gz rh.af_avg16_syn_bbr/path.pd.nii.gz rh.ar_avg16_syn_bbr/path.pd.nii.gz rh.atr_avg16_syn_bbr/path.pd.nii.gz rh.cbd_avg16_syn_bbr/path.pd.nii.gz rh.cbv_avg16_syn_bbr/path.pd.nii.gz rh.cst_avg16_syn_bbr/path.pd.nii.gz rh.emc_avg16_syn_bbr/path.pd.nii.gz rh.fat_avg16_syn_bbr/path.pd.nii.gz rh.fx_avg16_syn_bbr/path.pd.nii.gz rh.ilf_avg16_syn_bbr/path.pd.nii.gz rh.mlf_avg16_syn_bbr/path.pd.nii.gz rh.or_avg16_syn_bbr/path.pd.nii.gz rh.slf1_avg16_syn_bbr/path.pd.nii.gz rh.slf2_avg16_syn_bbr/path.pd.nii.gz rh.slf3_avg16_syn_bbr/path.pd.nii.gz rh.uf_avg16_syn_bbr/path.pd.nii.gz --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/merged_avg16_syn_bbr.mgz --ctab /usr/local/freesurfer/7.3.2//FreeSurferColorLUT.txt --thresh .2 sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath Input files: acomm_avg16_syn_bbr/path.pd.nii.gz cc.bodyc_avg16_syn_bbr/path.pd.nii.gz cc.bodyp_avg16_syn_bbr/path.pd.nii.gz cc.bodypf_avg16_syn_bbr/path.pd.nii.gz cc.bodypm_avg16_syn_bbr/path.pd.nii.gz cc.bodyt_avg16_syn_bbr/path.pd.nii.gz cc.genu_avg16_syn_bbr/path.pd.nii.gz cc.rostrum_avg16_syn_bbr/path.pd.nii.gz cc.splenium_avg16_syn_bbr/path.pd.nii.gz lh.af_avg16_syn_bbr/path.pd.nii.gz lh.ar_avg16_syn_bbr/path.pd.nii.gz lh.atr_avg16_syn_bbr/path.pd.nii.gz lh.cbd_avg16_syn_bbr/path.pd.nii.gz lh.cbv_avg16_syn_bbr/path.pd.nii.gz lh.cst_avg16_syn_bbr/path.pd.nii.gz lh.emc_avg16_syn_bbr/path.pd.nii.gz lh.fat_avg16_syn_bbr/path.pd.nii.gz lh.fx_avg16_syn_bbr/path.pd.nii.gz lh.ilf_avg16_syn_bbr/path.pd.nii.gz lh.mlf_avg16_syn_bbr/path.pd.nii.gz lh.or_avg16_syn_bbr/path.pd.nii.gz lh.slf1_avg16_syn_bbr/path.pd.nii.gz lh.slf2_avg16_syn_bbr/path.pd.nii.gz lh.slf3_avg16_syn_bbr/path.pd.nii.gz lh.uf_avg16_syn_bbr/path.pd.nii.gz mcp_avg16_syn_bbr/path.pd.nii.gz rh.af_avg16_syn_bbr/path.pd.nii.gz rh.ar_avg16_syn_bbr/path.pd.nii.gz rh.atr_avg16_syn_bbr/path.pd.nii.gz rh.cbd_avg16_syn_bbr/path.pd.nii.gz rh.cbv_avg16_syn_bbr/path.pd.nii.gz rh.cst_avg16_syn_bbr/path.pd.nii.gz rh.emc_avg16_syn_bbr/path.pd.nii.gz rh.fat_avg16_syn_bbr/path.pd.nii.gz rh.fx_avg16_syn_bbr/path.pd.nii.gz rh.ilf_avg16_syn_bbr/path.pd.nii.gz rh.mlf_avg16_syn_bbr/path.pd.nii.gz rh.or_avg16_syn_bbr/path.pd.nii.gz rh.slf1_avg16_syn_bbr/path.pd.nii.gz rh.slf2_avg16_syn_bbr/path.pd.nii.gz rh.slf3_avg16_syn_bbr/path.pd.nii.gz rh.uf_avg16_syn_bbr/path.pd.nii.gz Output file: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/merged_avg16_syn_bbr.mgz Color table file: /autofs/vast/freesurfer/centos7_x86_64/7.3.2/FreeSurferColorLUT.txt Lower threshold for display: 0.200000 Merging volume 1 of 42... Threshold: 26.2 Name: Anterior Commissure Merging volume 2 of 42... Threshold: 11.2 Name: Corpus Callosum - Body - Central Merging volume 3 of 42... Threshold: 17.2 Name: Corpus Callosum - Body - Parietal Merging volume 4 of 42... Threshold: 14.6 Name: Corpus Callosum - Body - Prefrontal Merging volume 5 of 42... Threshold: 10.2 Name: Corpus Callosum - Body - Premotor Merging volume 6 of 42... Threshold: 8.4 Name: Corpus Callosum - Body - Temporal Merging volume 7 of 42... Threshold: 13.6 Name: Corpus Callosum - Genu Merging volume 8 of 42... Threshold: 13.2 Name: Corpus Callosum - Rostrum Merging volume 9 of 42... Threshold: 14.6 Name: Corpus Callosum - Splenium Merging volume 10 of 42... Threshold: 12.4 Name: Left Arcuate Fasciculus Merging volume 11 of 42... Threshold: 26.8 Name: Left Acoustic Radiation Merging volume 12 of 42... Threshold: 28.6 Name: Left Anterior Thalamic Radiation Merging volume 13 of 42... Threshold: 52.6 Name: Left Cingulum Bundle - Dorsal Merging volume 14 of 42... Threshold: 48 Name: Left Cingulum Bundle - Ventral Merging volume 15 of 42... Threshold: 33 Name: Left Corticospinal Tract Merging volume 16 of 42... Threshold: 22 Name: Left Extreme Capsule Merging volume 17 of 42... Threshold: 20.8 Name: Left Frontal Aslant Tract Merging volume 18 of 42... Threshold: 27 Name: Left Fornix Merging volume 19 of 42... Threshold: 16.2 Name: Left Inferior Longitudinal Fasciculus Merging volume 20 of 42... Threshold: 16 Name: Left Middle Longitudinal Fasciculus Merging volume 21 of 42... Threshold: 22.2 Name: Left Optic Radiation Merging volume 22 of 42... Threshold: 16.6 Name: Left Superior Longitudinal Fasciculus - I Merging volume 23 of 42... Threshold: 15 Name: Left Superior Longitudinal Fasciculus - II Merging volume 24 of 42... Threshold: 17.2 Name: Left Superior Longitudinal Fasciculus - III Merging volume 25 of 42... Threshold: 21.8 Name: Left Uncinate Fasciculus Merging volume 26 of 42... Threshold: 9.6 Name: Middle Cerebellar Peduncle Merging volume 27 of 42... Threshold: 13.6 Name: Right Arcuate Fasciculus Merging volume 28 of 42... Threshold: 31.6 Name: Right Acoustic Radiation Merging volume 29 of 42... Threshold: 32.8 Name: Right Anterior Thalamic Radiation Merging volume 30 of 42... Threshold: 47 Name: Right Cingulum Bundle - Dorsal Merging volume 31 of 42... Threshold: 23 Name: Right Cingulum Bundle - Ventral Merging volume 32 of 42... Threshold: 18 Name: Right Corticospinal Tract Merging volume 33 of 42... Threshold: 29.2 Name: Right Extreme Capsule Merging volume 34 of 42... Threshold: 10 Name: Right Frontal Aslant Tract Merging volume 35 of 42... Threshold: 27.6 Name: Right Fornix Merging volume 36 of 42... Threshold: 11.8 Name: Right Inferior Longitudinal Fasciculus Merging volume 37 of 42... Threshold: 21.2 Name: Right Middle Longitudinal Fasciculus Merging volume 38 of 42... Threshold: 22.6 Name: Right Optic Radiation Merging volume 39 of 42... Threshold: 19.8 Name: Right Superior Longitudinal Fasciculus - I Merging volume 40 of 42... Threshold: 16.8 Name: Right Superior Longitudinal Fasciculus - II Merging volume 41 of 42... Threshold: 25.6 Name: Right Superior Longitudinal Fasciculus - III Merging volume 42 of 42... Threshold: 27 Name: Right Uncinate Fasciculus Done in 6.082 sec. dmri_mergepaths done #------------------------------------- trac-paths finished without error at Fri Jul 14 18:00:12 EDT 2023 New invocation of trac-all Fri Jul 14 19:28:08 EDT 2023 /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/trac-all -path -c dmrirc.rerun Subject sub-BANDA001 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Actual FREESURFER_HOME /autofs/vast/freesurfer/centos7_x86_64/7.3.2 build-stamp.txt: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 erd37 atalanta.nmr.mgh.harvard.edu Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 131070 memorylocked unlimited maxproc 32768 maxlocks unlimited maxsignal 2062265 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 527971832 122333640 238499124 214036 167139068 403994328 Swap: 67108860 0 67108860 ######################################## Program versions: trac-all 7.3.2 mri_convert --all-info ProgramName: mri_convert ProgramArguments: mri_convert --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:28:08-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 FLIRT version 6.0 bbregister 7.3.2 mri_cvs_register 7.3.2 ProgramName: dmri_motion ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_motion --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:28:08-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_train ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_train --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:28:08-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_paths ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_paths --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:28:08-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_pathstats ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:28:08-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_mergepaths ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_mergepaths --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:28:08-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_group ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_group --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:28:08-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /usr/local/freesurfer/7.3.2/ Previous: /usr/local/freesurfer/7.3.2 New invocation of trac-paths erd37 atalanta.nmr.mgh.harvard.edu Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 7340032 kbytes descriptors 32768 memorylocked unlimited maxproc 2062265 maxlocks unlimited maxsignal 2062265 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 527971832 122334224 238497304 215484 167140304 403992328 Swap: 67108860 0 67108860 #------------------------------------- /usr/local/freesurfer/7.3.2//bin/trac-paths #------------------------------------- #@# DWI set selection Fri Jul 14 19:28:11 EDT 2023 ln -sf dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/data.nii.gz ln -sf dwi.bvecs /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvecs ln -sf dwi.bvals /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvals #------------------------------------- #@# Path reconstruction Fri Jul 14 19:28:11 EDT 2023 rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr /usr/local/freesurfer/7.3.2//bin/dmri_paths --outdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr --dwi /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/data.nii.gz --grad /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvecs --bval /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvals --mask /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_end1_dil.nii.gz --roi2 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_end2_dil.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/syn_warp.m3z --init /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_12.txt --nprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all --lprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all --seg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_12_std.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_paths --outdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr --dwi /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/data.nii.gz --grad /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvecs --bval /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvals --mask /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_end1_dil.nii.gz --roi2 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_end2_dil.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/syn_warp.m3z --init /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_12.txt --nprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all --lprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all --seg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_12_std.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Output directory: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr DWIs: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/data.nii.gz Gradients: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvecs B-values: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvals Mask: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz BEDPOST directory: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_7.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_12.txt End ROI 1: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_end1_dil.nii.gz End ROI 2: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_end2_dil.nii.gz Neighbor aseg prior: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all Neighbor aseg label ID list: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all Local aseg label ID list: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz DWI-to-atlas affine registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/diff2syn.lta DWI-to-atlas nonlinear registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z Number of burn-in samples: 200 Number of post-burn-in samples: 7500 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_7_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_12_std.txt Loading DWIs from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/data.nii.gz Loading mask from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri.bedpostX Loading b-values from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvals Loading gradients from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvecs INFO: Found 28 baseline images (b = 5) out of a total of 398 frames INFO: Found 482157 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_end1_dil.nii.gz Loading affine registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/diff2syn.lta LTA registration format detected FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -3.375, ref det = -3.375 Loading non-linear registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Reading morph inverse Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.x.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.y.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.z.mgz Loading segmentation map from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_end2_dil.nii.gz ERROR: Could not open /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_7.txt Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux trac-paths exited with ERRORS at Fri Jul 14 19:29:08 EDT 2023 New invocation of trac-all Fri Jul 14 19:29:53 EDT 2023 /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/trac-all -path -c dmrirc.rerun Subject sub-BANDA001 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Actual FREESURFER_HOME /autofs/vast/freesurfer/centos7_x86_64/7.3.2 build-stamp.txt: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 erd37 atalanta.nmr.mgh.harvard.edu Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 131070 memorylocked unlimited maxproc 32768 maxlocks unlimited maxsignal 2062265 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 527971832 122341308 238501392 214760 167129132 403985972 Swap: 67108860 0 67108860 ######################################## Program versions: trac-all 7.3.2 mri_convert --all-info ProgramName: mri_convert ProgramArguments: mri_convert --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:29:53-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 FLIRT version 6.0 bbregister 7.3.2 mri_cvs_register 7.3.2 ProgramName: dmri_motion ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_motion --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:29:53-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_train ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_train --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:29:53-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_paths ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_paths --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:29:53-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_pathstats ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:29:53-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_mergepaths ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_mergepaths --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:29:53-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_group ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_group --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:29:53-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /usr/local/freesurfer/7.3.2/ Previous: /usr/local/freesurfer/7.3.2 New invocation of trac-all Fri Jul 14 19:35:14 EDT 2023 /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/trac-all -path -c dmrirc.rerun Subject sub-BANDA001 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Actual FREESURFER_HOME /autofs/vast/freesurfer/centos7_x86_64/7.3.2 build-stamp.txt: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 erd37 atalanta.nmr.mgh.harvard.edu Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 131070 memorylocked unlimited maxproc 32768 maxlocks unlimited maxsignal 2062265 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 527971832 124467592 236375660 214036 167128580 401860412 Swap: 67108860 0 67108860 ######################################## Program versions: trac-all 7.3.2 mri_convert --all-info ProgramName: mri_convert ProgramArguments: mri_convert --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:35:14-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 FLIRT version 6.0 bbregister 7.3.2 mri_cvs_register 7.3.2 ProgramName: dmri_motion ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_motion --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:35:14-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_train ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_train --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:35:14-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_paths ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_paths --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:35:14-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_pathstats ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:35:14-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_mergepaths ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_mergepaths --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:35:14-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_group ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_group --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:35:14-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /usr/local/freesurfer/7.3.2/ Previous: /usr/local/freesurfer/7.3.2 New invocation of trac-paths erd37 atalanta.nmr.mgh.harvard.edu Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 7340032 kbytes descriptors 32768 memorylocked unlimited maxproc 2062265 maxlocks unlimited maxsignal 2062265 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 527971832 124472724 236369776 214760 167129332 401854560 Swap: 67108860 0 67108860 #------------------------------------- /usr/local/freesurfer/7.3.2//bin/trac-paths #------------------------------------- #@# DWI set selection Fri Jul 14 19:35:17 EDT 2023 ln -sf dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/data.nii.gz ln -sf dwi.bvecs /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvecs ln -sf dwi.bvals /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvals #------------------------------------- #@# Path reconstruction Fri Jul 14 19:35:17 EDT 2023 rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr /usr/local/freesurfer/7.3.2//bin/dmri_paths --outdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr --dwi /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/data.nii.gz --grad /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvecs --bval /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvals --mask /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_end1_dil.nii.gz --roi2 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_end2_dil.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/syn_warp.m3z --init /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_9.txt --nprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all --lprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all --seg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_9_std.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_paths --outdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr --dwi /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/data.nii.gz --grad /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvecs --bval /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvals --mask /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_end1_dil.nii.gz --roi2 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_end2_dil.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/syn_warp.m3z --init /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_9.txt --nprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all --lprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all --seg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_9_std.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Output directory: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr DWIs: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/data.nii.gz Gradients: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvecs B-values: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvals Mask: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz BEDPOST directory: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_5.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_9.txt End ROI 1: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_end1_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_end1_dil.nii.gz End ROI 2: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_end2_dil.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_end2_dil.nii.gz Neighbor aseg prior: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all Neighbor aseg label ID list: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all Local aseg label ID list: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz DWI-to-atlas affine registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/diff2syn.lta DWI-to-atlas nonlinear registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z Number of burn-in samples: 200 Number of post-burn-in samples: 7500 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_5_std.txt /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_9_std.txt Loading DWIs from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/data.nii.gz Loading mask from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri.bedpostX Loading b-values from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvals Loading gradients from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvecs INFO: Found 28 baseline images (b = 5) out of a total of 398 frames INFO: Found 482157 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_end1_dil.nii.gz Loading affine registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/diff2syn.lta LTA registration format detected FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -3.375, ref det = -3.375 Loading non-linear registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Reading morph inverse Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.x.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.y.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.z.mgz Loading segmentation map from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_5.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/cc.genu_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/cc.genu_avg16_syn_bbr_cpts_5_std.txt Processing pathway 1 of 3... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr Done in 283.389 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_5.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cbv_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.cbv_avg16_syn_bbr_cpts_5_std.txt Processing pathway 2 of 3... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr Done in 184.854 sec. Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_9.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/rh.fx_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/rh.fx_avg16_syn_bbr_cpts_9_std.txt Processing pathway 3 of 3... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr Done in 658.808 sec. dmri_paths done fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/path.pd.nii.gz -thr 28.0000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/path.pd.nii.gz -thr 106.0000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.nii.gz fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/path.pd.nii.gz -thr 56.8000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.nii.gz /usr/local/freesurfer/7.3.2//bin/dmri_trk2trk --in /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.genu.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cbv.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.fx.mean.trk --inref /usr/local/freesurfer/7.3.2//trctrain/hcp/MGH35_HCP_FA_template.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/syn_warp.m3z --inv --smooth --outasc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/path.ref.txt --outref /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit_FA.nii.gz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_trk2trk --in /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.genu.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cbv.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.fx.mean.trk --inref /usr/local/freesurfer/7.3.2//trctrain/hcp/MGH35_HCP_FA_template.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/syn_warp.m3z --inv --smooth --outasc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/path.ref.txt --outref /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit_FA.nii.gz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input .trk files: /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/cc.genu.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cbv.mean.trk /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/rh.fx.mean.trk Output text files: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/path.ref.txt /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/path.ref.txt Input reference: /autofs/vast/freesurfer/centos7_x86_64/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz Output reference: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit_FA.nii.gz Affine registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/diff2syn.lta Nonlinear registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z Invert registration: 1 Fill gaps between points: 0 Smoothing streamlines Loading affine registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/diff2syn.lta LTA registration format detected FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -3.375, ref det = -3.375 Loading non-linear registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Reading morph inverse Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.x.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.y.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.z.mgz Processing input file 1 of 3... Done in 0.006 sec. Processing input file 2 of 3... Done in 0.005 sec. Processing input file 3 of 3... Done in 0.005 sec. dmri_trk2trk done /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path cc.genu --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path cc.genu --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: cc.genu Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr... Done in 0.533 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 19:55:09 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.tRQfpj/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.tRQfpj/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.tRQfpj/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.tRQfpj/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.tRQfpj/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.tRQfpj/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.tRQfpj/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.tRQfpj/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.tRQfpj/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2522 values in range Counting number of voxels in first frame Found 2521 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2521 2521.000000 143986 1.750865 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: 22.59 41.85 39.27 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 2522 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2522 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2522 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label 13243 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt1.surf.label" number of vertices = 8071 total surface area = 5410 mm^2 total gray matter volume = 17539 mm^3 average cortical thickness = 2.866 mm +- 0.592 mm average integrated rectified mean curvature = 0.137 average integrated rectified Gaussian curvature = 0.035 folding index = 139 intrinsic curvature index = 11.2 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 19:55:20 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.CUkDaW/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.CUkDaW/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.CUkDaW/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.CUkDaW/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.CUkDaW/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.CUkDaW/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.CUkDaW/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.CUkDaW/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/tmp.CUkDaW/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2852 values in range Counting number of voxels in first frame Found 2851 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 2851 2851.000000 147136 1.937663 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -24.39 39.16 36.99 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 2852 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2852 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2852 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label 14750 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/cc.genu_avg16_syn_bbr/endpt2.surf.label" number of vertices = 8876 total surface area = 5918 mm^2 total gray matter volume = 19998 mm^3 average cortical thickness = 3.036 mm +- 0.576 mm average integrated rectified mean curvature = 0.130 average integrated rectified Gaussian curvature = 0.029 folding index = 130 intrinsic curvature index = 10.2 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.cbv --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.cbv --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: lh.cbv Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr... Done in 0.475 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 19:55:32 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.f5IBTP/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.f5IBTP/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.f5IBTP/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.f5IBTP/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.f5IBTP/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.f5IBTP/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.f5IBTP/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.f5IBTP/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.f5IBTP/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 1498 values in range Counting number of voxels in first frame Found 1497 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 1497 1497.000000 147136 1.017426 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -17.57 -66.83 35.10 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 1498 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 1498 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 1498 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label 6241 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt1.surf.label" number of vertices = 2855 total surface area = 1846 mm^2 total gray matter volume = 4963 mm^3 average cortical thickness = 2.810 mm +- 0.431 mm average integrated rectified mean curvature = 0.116 average integrated rectified Gaussian curvature = 0.023 folding index = 28 intrinsic curvature index = 2.4 mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 19:55:43 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.um0oSu/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.um0oSu/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.um0oSu/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.um0oSu/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.um0oSu/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.um0oSu/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.um0oSu/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.um0oSu/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/tmp.um0oSu/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 854 values in range Counting number of voxels in first frame Found 853 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 853 853.000000 147136 0.579736 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: -26.76 -38.52 0.47 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 854 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 854 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 854 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label 3113 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cbv_avg16_syn_bbr/endpt2.surf.label" number of vertices = 1348 total surface area = 916 mm^2 total gray matter volume = 1898 mm^3 average cortical thickness = 2.743 mm +- 1.012 mm average integrated rectified mean curvature = 0.104 average integrated rectified Gaussian curvature = 0.021 folding index = 12 intrinsic curvature index = 1.0 /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path rh.fx --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path rh.fx --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: rh.fx Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr... Done in 0.506 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi rh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = rh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 42813 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz Dim: 143986 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz Fri Jul 14 19:55:54 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.NoRP4J/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.NoRP4J/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.NoRP4J/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.NoRP4J/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.NoRP4J/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.NoRP4J/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.NoRP4J/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.NoRP4J/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/tmp.NoRP4J/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 3418 values in range Counting number of voxels in first frame Found 3417 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz Count: 3417 3417.000000 143986 2.373147 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label --surf sub-BANDA001 rh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.bin.mgz Scanning the volume Centroid: 33.62 3.89 -8.14 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Found 3418 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label --s sub-BANDA001 --hemi rh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label regmethod = surface srchemi = rh trghemi = rh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 3418 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 3418 nlabel points Performing mapping from target back to the source label 143986 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label 7177 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.stats sub-BANDA001 rh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/rh.white... Using TH3 vertex volume calc Total face volume 312803 Total vertex volume 308788 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/rh.fx_avg16_syn_bbr/endpt2.surf.label" number of vertices = 4964 total surface area = 3247 mm^2 total gray matter volume = 13638 mm^3 average cortical thickness = 3.539 mm +- 0.951 mm average integrated rectified mean curvature = 0.126 average integrated rectified Gaussian curvature = 0.036 folding index = 68 intrinsic curvature index = 7.1 /usr/local/freesurfer/7.3.2//bin/dmri_mergepaths --indir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath --in acomm_avg16_syn_bbr/path.pd.nii.gz cc.bodyc_avg16_syn_bbr/path.pd.nii.gz cc.bodyp_avg16_syn_bbr/path.pd.nii.gz cc.bodypf_avg16_syn_bbr/path.pd.nii.gz cc.bodypm_avg16_syn_bbr/path.pd.nii.gz cc.bodyt_avg16_syn_bbr/path.pd.nii.gz cc.genu_avg16_syn_bbr/path.pd.nii.gz cc.rostrum_avg16_syn_bbr/path.pd.nii.gz cc.splenium_avg16_syn_bbr/path.pd.nii.gz lh.af_avg16_syn_bbr/path.pd.nii.gz lh.ar_avg16_syn_bbr/path.pd.nii.gz lh.atr_avg16_syn_bbr/path.pd.nii.gz lh.cbd_avg16_syn_bbr/path.pd.nii.gz lh.cbv_avg16_syn_bbr/path.pd.nii.gz lh.cst_avg16_syn_bbr/path.pd.nii.gz lh.emc_avg16_syn_bbr/path.pd.nii.gz lh.fat_avg16_syn_bbr/path.pd.nii.gz lh.fx_avg16_syn_bbr/path.pd.nii.gz lh.ilf_avg16_syn_bbr/path.pd.nii.gz lh.mlf_avg16_syn_bbr/path.pd.nii.gz lh.or_avg16_syn_bbr/path.pd.nii.gz lh.slf1_avg16_syn_bbr/path.pd.nii.gz lh.slf2_avg16_syn_bbr/path.pd.nii.gz lh.slf3_avg16_syn_bbr/path.pd.nii.gz lh.uf_avg16_syn_bbr/path.pd.nii.gz mcp_avg16_syn_bbr/path.pd.nii.gz rh.af_avg16_syn_bbr/path.pd.nii.gz rh.ar_avg16_syn_bbr/path.pd.nii.gz rh.atr_avg16_syn_bbr/path.pd.nii.gz rh.cbd_avg16_syn_bbr/path.pd.nii.gz rh.cbv_avg16_syn_bbr/path.pd.nii.gz rh.cst_avg16_syn_bbr/path.pd.nii.gz rh.emc_avg16_syn_bbr/path.pd.nii.gz rh.fat_avg16_syn_bbr/path.pd.nii.gz rh.fx_avg16_syn_bbr/path.pd.nii.gz rh.ilf_avg16_syn_bbr/path.pd.nii.gz rh.mlf_avg16_syn_bbr/path.pd.nii.gz rh.or_avg16_syn_bbr/path.pd.nii.gz rh.slf1_avg16_syn_bbr/path.pd.nii.gz rh.slf2_avg16_syn_bbr/path.pd.nii.gz rh.slf3_avg16_syn_bbr/path.pd.nii.gz rh.uf_avg16_syn_bbr/path.pd.nii.gz --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/merged_avg16_syn_bbr.mgz --ctab /usr/local/freesurfer/7.3.2//FreeSurferColorLUT.txt --thresh .2 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_mergepaths --indir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath --in acomm_avg16_syn_bbr/path.pd.nii.gz cc.bodyc_avg16_syn_bbr/path.pd.nii.gz cc.bodyp_avg16_syn_bbr/path.pd.nii.gz cc.bodypf_avg16_syn_bbr/path.pd.nii.gz cc.bodypm_avg16_syn_bbr/path.pd.nii.gz cc.bodyt_avg16_syn_bbr/path.pd.nii.gz cc.genu_avg16_syn_bbr/path.pd.nii.gz cc.rostrum_avg16_syn_bbr/path.pd.nii.gz cc.splenium_avg16_syn_bbr/path.pd.nii.gz lh.af_avg16_syn_bbr/path.pd.nii.gz lh.ar_avg16_syn_bbr/path.pd.nii.gz lh.atr_avg16_syn_bbr/path.pd.nii.gz lh.cbd_avg16_syn_bbr/path.pd.nii.gz lh.cbv_avg16_syn_bbr/path.pd.nii.gz lh.cst_avg16_syn_bbr/path.pd.nii.gz lh.emc_avg16_syn_bbr/path.pd.nii.gz lh.fat_avg16_syn_bbr/path.pd.nii.gz lh.fx_avg16_syn_bbr/path.pd.nii.gz lh.ilf_avg16_syn_bbr/path.pd.nii.gz lh.mlf_avg16_syn_bbr/path.pd.nii.gz lh.or_avg16_syn_bbr/path.pd.nii.gz lh.slf1_avg16_syn_bbr/path.pd.nii.gz lh.slf2_avg16_syn_bbr/path.pd.nii.gz lh.slf3_avg16_syn_bbr/path.pd.nii.gz lh.uf_avg16_syn_bbr/path.pd.nii.gz mcp_avg16_syn_bbr/path.pd.nii.gz rh.af_avg16_syn_bbr/path.pd.nii.gz rh.ar_avg16_syn_bbr/path.pd.nii.gz rh.atr_avg16_syn_bbr/path.pd.nii.gz rh.cbd_avg16_syn_bbr/path.pd.nii.gz rh.cbv_avg16_syn_bbr/path.pd.nii.gz rh.cst_avg16_syn_bbr/path.pd.nii.gz rh.emc_avg16_syn_bbr/path.pd.nii.gz rh.fat_avg16_syn_bbr/path.pd.nii.gz rh.fx_avg16_syn_bbr/path.pd.nii.gz rh.ilf_avg16_syn_bbr/path.pd.nii.gz rh.mlf_avg16_syn_bbr/path.pd.nii.gz rh.or_avg16_syn_bbr/path.pd.nii.gz rh.slf1_avg16_syn_bbr/path.pd.nii.gz rh.slf2_avg16_syn_bbr/path.pd.nii.gz rh.slf3_avg16_syn_bbr/path.pd.nii.gz rh.uf_avg16_syn_bbr/path.pd.nii.gz --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/merged_avg16_syn_bbr.mgz --ctab /usr/local/freesurfer/7.3.2//FreeSurferColorLUT.txt --thresh .2 sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath Input files: acomm_avg16_syn_bbr/path.pd.nii.gz cc.bodyc_avg16_syn_bbr/path.pd.nii.gz cc.bodyp_avg16_syn_bbr/path.pd.nii.gz cc.bodypf_avg16_syn_bbr/path.pd.nii.gz cc.bodypm_avg16_syn_bbr/path.pd.nii.gz cc.bodyt_avg16_syn_bbr/path.pd.nii.gz cc.genu_avg16_syn_bbr/path.pd.nii.gz cc.rostrum_avg16_syn_bbr/path.pd.nii.gz cc.splenium_avg16_syn_bbr/path.pd.nii.gz lh.af_avg16_syn_bbr/path.pd.nii.gz lh.ar_avg16_syn_bbr/path.pd.nii.gz lh.atr_avg16_syn_bbr/path.pd.nii.gz lh.cbd_avg16_syn_bbr/path.pd.nii.gz lh.cbv_avg16_syn_bbr/path.pd.nii.gz lh.cst_avg16_syn_bbr/path.pd.nii.gz lh.emc_avg16_syn_bbr/path.pd.nii.gz lh.fat_avg16_syn_bbr/path.pd.nii.gz lh.fx_avg16_syn_bbr/path.pd.nii.gz lh.ilf_avg16_syn_bbr/path.pd.nii.gz lh.mlf_avg16_syn_bbr/path.pd.nii.gz lh.or_avg16_syn_bbr/path.pd.nii.gz lh.slf1_avg16_syn_bbr/path.pd.nii.gz lh.slf2_avg16_syn_bbr/path.pd.nii.gz lh.slf3_avg16_syn_bbr/path.pd.nii.gz lh.uf_avg16_syn_bbr/path.pd.nii.gz mcp_avg16_syn_bbr/path.pd.nii.gz rh.af_avg16_syn_bbr/path.pd.nii.gz rh.ar_avg16_syn_bbr/path.pd.nii.gz rh.atr_avg16_syn_bbr/path.pd.nii.gz rh.cbd_avg16_syn_bbr/path.pd.nii.gz rh.cbv_avg16_syn_bbr/path.pd.nii.gz rh.cst_avg16_syn_bbr/path.pd.nii.gz rh.emc_avg16_syn_bbr/path.pd.nii.gz rh.fat_avg16_syn_bbr/path.pd.nii.gz rh.fx_avg16_syn_bbr/path.pd.nii.gz rh.ilf_avg16_syn_bbr/path.pd.nii.gz rh.mlf_avg16_syn_bbr/path.pd.nii.gz rh.or_avg16_syn_bbr/path.pd.nii.gz rh.slf1_avg16_syn_bbr/path.pd.nii.gz rh.slf2_avg16_syn_bbr/path.pd.nii.gz rh.slf3_avg16_syn_bbr/path.pd.nii.gz rh.uf_avg16_syn_bbr/path.pd.nii.gz Output file: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/merged_avg16_syn_bbr.mgz Color table file: /autofs/vast/freesurfer/centos7_x86_64/7.3.2/FreeSurferColorLUT.txt Lower threshold for display: 0.200000 Merging volume 1 of 42... Threshold: 26.2 Name: Anterior Commissure Merging volume 2 of 42... Threshold: 11.2 Name: Corpus Callosum - Body - Central Merging volume 3 of 42... Threshold: 17.2 Name: Corpus Callosum - Body - Parietal Merging volume 4 of 42... Threshold: 14.6 Name: Corpus Callosum - Body - Prefrontal Merging volume 5 of 42... Threshold: 10.2 Name: Corpus Callosum - Body - Premotor Merging volume 6 of 42... Threshold: 8.4 Name: Corpus Callosum - Body - Temporal Merging volume 7 of 42... Threshold: 12.8 Name: Corpus Callosum - Genu Merging volume 8 of 42... Threshold: 13.2 Name: Corpus Callosum - Rostrum Merging volume 9 of 42... Threshold: 14.6 Name: Corpus Callosum - Splenium Merging volume 10 of 42... Threshold: 12.4 Name: Left Arcuate Fasciculus Merging volume 11 of 42... Threshold: 26.8 Name: Left Acoustic Radiation Merging volume 12 of 42... Threshold: 28.6 Name: Left Anterior Thalamic Radiation Merging volume 13 of 42... Threshold: 52.6 Name: Left Cingulum Bundle - Dorsal Merging volume 14 of 42... Threshold: 50.8 Name: Left Cingulum Bundle - Ventral Merging volume 15 of 42... Threshold: 33 Name: Left Corticospinal Tract Merging volume 16 of 42... Threshold: 22 Name: Left Extreme Capsule Merging volume 17 of 42... Threshold: 20.8 Name: Left Frontal Aslant Tract Merging volume 18 of 42... Threshold: 27 Name: Left Fornix Merging volume 19 of 42... Threshold: 16.2 Name: Left Inferior Longitudinal Fasciculus Merging volume 20 of 42... Threshold: 16 Name: Left Middle Longitudinal Fasciculus Merging volume 21 of 42... Threshold: 22.2 Name: Left Optic Radiation Merging volume 22 of 42... Threshold: 16.6 Name: Left Superior Longitudinal Fasciculus - I Merging volume 23 of 42... Threshold: 15 Name: Left Superior Longitudinal Fasciculus - II Merging volume 24 of 42... Threshold: 17.2 Name: Left Superior Longitudinal Fasciculus - III Merging volume 25 of 42... Threshold: 21.8 Name: Left Uncinate Fasciculus Merging volume 26 of 42... Threshold: 9.6 Name: Middle Cerebellar Peduncle Merging volume 27 of 42... Threshold: 13.6 Name: Right Arcuate Fasciculus Merging volume 28 of 42... Threshold: 31.6 Name: Right Acoustic Radiation Merging volume 29 of 42... Threshold: 32.8 Name: Right Anterior Thalamic Radiation Merging volume 30 of 42... Threshold: 47 Name: Right Cingulum Bundle - Dorsal Merging volume 31 of 42... Threshold: 23 Name: Right Cingulum Bundle - Ventral Merging volume 32 of 42... Threshold: 18 Name: Right Corticospinal Tract Merging volume 33 of 42... Threshold: 29.2 Name: Right Extreme Capsule Merging volume 34 of 42... Threshold: 10 Name: Right Frontal Aslant Tract Merging volume 35 of 42... Threshold: 27.2 Name: Right Fornix Merging volume 36 of 42... Threshold: 11.8 Name: Right Inferior Longitudinal Fasciculus Merging volume 37 of 42... Threshold: 21.2 Name: Right Middle Longitudinal Fasciculus Merging volume 38 of 42... Threshold: 22.6 Name: Right Optic Radiation Merging volume 39 of 42... Threshold: 19.8 Name: Right Superior Longitudinal Fasciculus - I Merging volume 40 of 42... Threshold: 16.8 Name: Right Superior Longitudinal Fasciculus - II Merging volume 41 of 42... Threshold: 25.6 Name: Right Superior Longitudinal Fasciculus - III Merging volume 42 of 42... Threshold: 27 Name: Right Uncinate Fasciculus Done in 6.215 sec. dmri_mergepaths done #------------------------------------- trac-paths finished without error at Fri Jul 14 19:56:11 EDT 2023 New invocation of trac-all Fri Jul 14 19:59:25 EDT 2023 /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/trac-all -path -c dmrirc.rerun Subject sub-BANDA001 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Actual FREESURFER_HOME /autofs/vast/freesurfer/centos7_x86_64/7.3.2 build-stamp.txt: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 erd37 atalanta.nmr.mgh.harvard.edu Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 131070 memorylocked unlimited maxproc 32768 maxlocks unlimited maxsignal 2062265 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 527971832 123665116 237150316 214760 167156400 402662148 Swap: 67108860 0 67108860 ######################################## Program versions: trac-all 7.3.2 mri_convert --all-info ProgramName: mri_convert ProgramArguments: mri_convert --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:59:25-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 FLIRT version 6.0 bbregister 7.3.2 mri_cvs_register 7.3.2 ProgramName: dmri_motion ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_motion --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:59:25-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_train ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_train --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:59:25-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_paths ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_paths --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:59:25-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_pathstats ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:59:25-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_mergepaths ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_mergepaths --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:59:25-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 ProgramName: dmri_group ProgramArguments: /usr/local/freesurfer/7.3.2//bin/dmri_group --all-info ProgramVersion: 7.3.2 TimeStamp: 2023/07/14-23:59:25-GMT BuildTime: Aug 4 2022 00:15:18 BuildStamp: freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 User: erd37 Machine: atalanta.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-1160.92.1.el7.x86_64 CompilerName: GCC CompilerVersion: 4.8.5 INFO: current FREESURFER_HOME does not match that of previous processing. Current: /usr/local/freesurfer/7.3.2/ Previous: /usr/local/freesurfer/7.3.2 New invocation of trac-paths erd37 atalanta.nmr.mgh.harvard.edu Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 7340032 kbytes descriptors 32768 memorylocked unlimited maxproc 2062265 maxlocks unlimited maxsignal 2062265 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 527971832 123667176 237148412 214548 167156244 402660300 Swap: 67108860 0 67108860 #------------------------------------- /usr/local/freesurfer/7.3.2//bin/trac-paths #------------------------------------- #@# DWI set selection Fri Jul 14 19:59:28 EDT 2023 ln -sf dwi.nii.gz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/data.nii.gz ln -sf dwi.bvecs /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvecs ln -sf dwi.bvals /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvals #------------------------------------- #@# Path reconstruction Fri Jul 14 19:59:28 EDT 2023 rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr /usr/local/freesurfer/7.3.2//bin/dmri_paths --outdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr --dwi /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/data.nii.gz --grad /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvecs --bval /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvals --mask /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz --roi2 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end2_dil.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/syn_warp.m3z --init /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt --nprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all --lprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all --seg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7_std.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_paths --outdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr --dwi /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/data.nii.gz --grad /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvecs --bval /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvals --mask /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz --roi2 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end2_dil.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/syn_warp.m3z --init /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt --nprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all --lprior /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all --seg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7_std.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Output directory: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr DWIs: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/data.nii.gz Gradients: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvecs B-values: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvals Mask: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz BEDPOST directory: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt End ROI 1: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz End ROI 2: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end2_dil.nii.gz Neighbor aseg prior: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all Neighbor aseg label ID list: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all Local aseg label ID list: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz DWI-to-atlas affine registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/diff2syn.lta DWI-to-atlas nonlinear registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z Number of burn-in samples: 200 Number of post-burn-in samples: 7500 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7_std.txt Loading DWIs from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/data.nii.gz Loading mask from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri.bedpostX Loading b-values from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvals Loading gradients from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/bvecs INFO: Found 28 baseline images (b = 5) out of a total of 398 frames INFO: Found 482157 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz Loading affine registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/diff2syn.lta LTA registration format detected FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -3.375, ref det = -3.375 Loading non-linear registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Reading morph inverse Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.x.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.y.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.z.mgz Loading segmentation map from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/aparc+aseg+thalnuc.nii.gz Creating output directory /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end1_dil.nii.gz Loading end ROI from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_end2_dil.nii.gz Loading control points from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_0_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_0_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_-1_0.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_-1_0.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_0_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_0_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_0_0_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_0_0_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_-1_1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_-1_1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_1_-1_-1.txt Loading local prior from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/syn/lh.cst_avg16_syn_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dlabel/diff/lh.cst_avg16_syn_bbr_cpts_7_std.txt Processing pathway 1 of 1... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr Done in 620.471 sec. dmri_paths done fslmaths /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/path.pd.nii.gz -thr 30.6000000 /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.nii.gz rm -rf /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.nii.gz /usr/local/freesurfer/7.3.2//bin/dmri_trk2trk --in /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cst.mean.trk --inref /usr/local/freesurfer/7.3.2//trctrain/hcp/MGH35_HCP_FA_template.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/syn_warp.m3z --inv --smooth --outasc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/path.ref.txt --outref /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit_FA.nii.gz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_trk2trk --in /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cst.mean.trk --inref /usr/local/freesurfer/7.3.2//trctrain/hcp/MGH35_HCP_FA_template.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2syn.lta --regnl /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/syn_warp.m3z --inv --smooth --outasc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/path.ref.txt --outref /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit_FA.nii.gz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input .trk files: /usr/local/freesurfer/7.3.2//trctrain/hcp/syn/lh.cst.mean.trk Output text files: /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/path.ref.txt Input reference: /autofs/vast/freesurfer/centos7_x86_64/7.3.2/trctrain/hcp/MGH35_HCP_FA_template.nii.gz Output reference: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit_FA.nii.gz Affine registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/diff2syn.lta Nonlinear registration: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z Invert registration: 1 Fill gaps between points: 0 Smoothing streamlines Loading affine registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/diff2syn.lta LTA registration format detected FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -3.375, ref det = -3.375 Loading non-linear registration from /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z setting orig areas to linear transform determinant scaled 1.00 Reading morph inverse Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.x.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.y.mgz Reading /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/xfms/syn_warp.m3z.inv.z.mgz Processing input file 1 of 1... Done in 0.007 sec. dmri_trk2trk done /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.cst --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/pathstats.byvoxel.txt 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_pathstats --intrc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr --dtbase /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/dtifit --path lh.cst --subj sub-BANDA001 --invox path.ref.txt --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/pathstats.overall.txt --outvox /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/pathstats.byvoxel.txt sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input tracula directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr Input DTI fit base: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dmri/dtifit Pathway name: lh.cst Subject name: sub-BANDA001 Output file for overall measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr... Done in 0.45 sec. dmri_pathstats done mri_vol2surf --mov /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.pd.nii.gz --reg /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta --srcsubject sub-BANDA001 --hemi lh --projdist-avg -3 3 .1 --trgsubject sub-BANDA001 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz srcvol = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.pd.nii.gz srcreg = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dmri/xfms/diff2anatorig.bbr.lta srcregold = 0 srcwarp unspecified surf = white hemi = lh trgsubject = sub-BANDA001 surfreg = sphere.reg ProjDist = 0.5 reshape = 0 interp = nearest float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Input reg is LTA -------- original matrix ----------- 0.99816 -0.03558 0.04910 -1.06357; -0.05870 -0.36451 0.92935 -36.11931; -0.01517 -0.93052 -0.36593 -10.65780; 0.00000 0.00000 0.00000 1.00000; -------- original matrix ----------- Reading surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface Projecting -3 3 0.1 1 -3 -3 3 using old 2 -2.9 -3 3 using old 3 -2.8 -3 3 using old 4 -2.7 -3 3 using old 5 -2.6 -3 3 using old 6 -2.5 -3 3 using old 7 -2.4 -3 3 using old 8 -2.3 -3 3 using old 9 -2.2 -3 3 using old 10 -2.1 -3 3 using old 11 -2 -3 3 using old 12 -1.9 -3 3 using old 13 -1.8 -3 3 using old 14 -1.7 -3 3 using old 15 -1.6 -3 3 using old 16 -1.5 -3 3 using old 17 -1.4 -3 3 using old 18 -1.3 -3 3 using old 19 -1.2 -3 3 using old 20 -1.1 -3 3 using old 21 -1 -3 3 using old 22 -0.900001 -3 3 using old 23 -0.800001 -3 3 using old 24 -0.700001 -3 3 using old 25 -0.600001 -3 3 using old 26 -0.500001 -3 3 using old 27 -0.400001 -3 3 using old 28 -0.300001 -3 3 using old 29 -0.200001 -3 3 using old 30 -0.100001 -3 3 using old 31 -6.10948e-07 -3 3 using old 32 0.0999994 -3 3 using old 33 0.199999 -3 3 using old 34 0.299999 -3 3 using old 35 0.399999 -3 3 using old 36 0.499999 -3 3 using old 37 0.599999 -3 3 using old 38 0.699999 -3 3 using old 39 0.799999 -3 3 using old 40 0.899999 -3 3 using old 41 0.999999 -3 3 using old 42 1.1 -3 3 using old 43 1.2 -3 3 using old 44 1.3 -3 3 using old 45 1.4 -3 3 using old 46 1.5 -3 3 using old 47 1.6 -3 3 using old 48 1.7 -3 3 using old 49 1.8 -3 3 using old 50 1.9 -3 3 using old 51 2 -3 3 using old 52 2.1 -3 3 using old 53 2.2 -3 3 using old 54 2.3 -3 3 using old 55 2.4 -3 3 using old 56 2.5 -3 3 using old 57 2.6 -3 3 using old 58 2.7 -3 3 using old 59 2.8 -3 3 using old 60 2.9 -3 3 using old 61 3 -3 3 using old Done mapping volume to surface Number of source voxels hit = 43850 Writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz Dim: 147136 1 1 fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz Fri Jul 14 20:10:52 EDT 2023 cd /autofs/space/nyx_002/users/edann/test_tutorial /usr/local/freesurfer/7.3.2//bin/fscalc /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz mul 61.00000000000000000000 --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz freesurfer-linux-centos7_x86_64-7.3.2-20220804-6354275 Linux atalanta.nmr.mgh.harvard.edu 3.10.0-1160.92.1.el7.x86_64 #1 SMP Tue Jun 20 11:48:01 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.L0Cn9b/tmp.mgh mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.L0Cn9b/tmp.mgh reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.L0Cn9b/tmp.mgh... ---------------------- mris_calc -o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.L0Cn9b/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.L0Cn9b/tmp.mgh mul 61.00000000000000000000 Saving result to '/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.L0Cn9b/tmp.mgh' (type = MGH ) [ ok ] ---------------------- mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.L0Cn9b/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz mri_convert /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.L0Cn9b/tmp.mgh /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz reading from /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/tmp.L0Cn9b/tmp.mgh... TR=2400.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999223, 0.0236447, -0.0315337) j_ras = (0.0113363, 0.938674, 0.344621) k_ras = (-0.0377483, -0.343995, 0.938212) writing to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz... mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline mri_binarize --min 1 --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz --o /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 input /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.mgz frame 0 nErode3d 0 nErode2d 0 output /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz Binarizing based on threshold min 1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Starting parallel 1 Found 2824 values in range Counting number of voxels in first frame Found 2823 voxels in final mask Writing output to /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz Count: 2823 2823.000000 147136 1.918633 mri_binarize done mri_cor2label --i /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz --id 1 --l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label --surf sub-BANDA001 lh white Loading mri /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.bin.mgz Scanning the volume Centroid: -16.35 -26.61 65.01 mri_cor2label completed SUCCESSFULLY 7.3.2 Loading surf /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Found 2824 label voxels Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label mri_label2label --srclabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label --s sub-BANDA001 --hemi lh --regmethod surface --dilate 5 --erode 5 --trglabel /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label srclabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label srcsubject = sub-BANDA001 trgsubject = sub-BANDA001 trglabel = /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label regmethod = surface srchemi = lh trghemi = lh trgsurface = white srcsurfreg = sphere.reg trgsurfreg = sphere.reg usehash = 1 Use ProjAbs = 0, 0 Use ProjFrac = 0, 0 DoPaint 0 SUBJECTS_DIR /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons FREESURFER_HOME /usr/local/freesurfer/7.3.2/ Loading source label. Found 2824 points in source label. Starting surface-based mapping Reading source registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Reading target surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white Reading target registration /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.sphere.reg Rescaling ... original radius = 100 Building target registration hash (res=16). Building source registration hash (res=16). INFO: found 2824 nlabel points Performing mapping from target back to the source label 147136 Number of reverse mapping hits = 0 Checking for and removing duplicates Writing label file /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label 14381 mri_label2label: Done mris_anatomical_stats -l /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label -f /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.stats sub-BANDA001 lh limiting computations to label /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label. reading volume /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/mri/wm.mgz... reading input surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... reading input pial surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.pial... reading input white surface /autofs/space/nyx_002/users/edann/test_tutorial/diffusion_recons/sub-BANDA001/surf/lh.white... Using TH3 vertex volume calc Total face volume 317209 Total vertex volume 313572 (mask=0) atlas_icv (eTIV) = 1599636 mm^3 (det: 1.217843 ) structure is "/autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/lh.cst_avg16_syn_bbr/endpt1.surf.label" number of vertices = 8147 total surface area = 5397 mm^2 total gray matter volume = 17518 mm^3 average cortical thickness = 3.039 mm +- 0.629 mm average integrated rectified mean curvature = 0.111 average integrated rectified Gaussian curvature = 0.020 folding index = 69 intrinsic curvature index = 6.9 /usr/local/freesurfer/7.3.2//bin/dmri_mergepaths --indir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath --in acomm_avg16_syn_bbr/path.pd.nii.gz cc.bodyc_avg16_syn_bbr/path.pd.nii.gz cc.bodyp_avg16_syn_bbr/path.pd.nii.gz cc.bodypf_avg16_syn_bbr/path.pd.nii.gz cc.bodypm_avg16_syn_bbr/path.pd.nii.gz cc.bodyt_avg16_syn_bbr/path.pd.nii.gz cc.genu_avg16_syn_bbr/path.pd.nii.gz cc.rostrum_avg16_syn_bbr/path.pd.nii.gz cc.splenium_avg16_syn_bbr/path.pd.nii.gz lh.af_avg16_syn_bbr/path.pd.nii.gz lh.ar_avg16_syn_bbr/path.pd.nii.gz lh.atr_avg16_syn_bbr/path.pd.nii.gz lh.cbd_avg16_syn_bbr/path.pd.nii.gz lh.cbv_avg16_syn_bbr/path.pd.nii.gz lh.cst_avg16_syn_bbr/path.pd.nii.gz lh.emc_avg16_syn_bbr/path.pd.nii.gz lh.fat_avg16_syn_bbr/path.pd.nii.gz lh.fx_avg16_syn_bbr/path.pd.nii.gz lh.ilf_avg16_syn_bbr/path.pd.nii.gz lh.mlf_avg16_syn_bbr/path.pd.nii.gz lh.or_avg16_syn_bbr/path.pd.nii.gz lh.slf1_avg16_syn_bbr/path.pd.nii.gz lh.slf2_avg16_syn_bbr/path.pd.nii.gz lh.slf3_avg16_syn_bbr/path.pd.nii.gz lh.uf_avg16_syn_bbr/path.pd.nii.gz mcp_avg16_syn_bbr/path.pd.nii.gz rh.af_avg16_syn_bbr/path.pd.nii.gz rh.ar_avg16_syn_bbr/path.pd.nii.gz rh.atr_avg16_syn_bbr/path.pd.nii.gz rh.cbd_avg16_syn_bbr/path.pd.nii.gz rh.cbv_avg16_syn_bbr/path.pd.nii.gz rh.cst_avg16_syn_bbr/path.pd.nii.gz rh.emc_avg16_syn_bbr/path.pd.nii.gz rh.fat_avg16_syn_bbr/path.pd.nii.gz rh.fx_avg16_syn_bbr/path.pd.nii.gz rh.ilf_avg16_syn_bbr/path.pd.nii.gz rh.mlf_avg16_syn_bbr/path.pd.nii.gz rh.or_avg16_syn_bbr/path.pd.nii.gz rh.slf1_avg16_syn_bbr/path.pd.nii.gz rh.slf2_avg16_syn_bbr/path.pd.nii.gz rh.slf3_avg16_syn_bbr/path.pd.nii.gz rh.uf_avg16_syn_bbr/path.pd.nii.gz --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/merged_avg16_syn_bbr.mgz --ctab /usr/local/freesurfer/7.3.2//FreeSurferColorLUT.txt --thresh .2 7.3.2 cwd /autofs/space/nyx_002/users/edann/test_tutorial cmdline /usr/local/freesurfer/7.3.2//bin/dmri_mergepaths --indir /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath --in acomm_avg16_syn_bbr/path.pd.nii.gz cc.bodyc_avg16_syn_bbr/path.pd.nii.gz cc.bodyp_avg16_syn_bbr/path.pd.nii.gz cc.bodypf_avg16_syn_bbr/path.pd.nii.gz cc.bodypm_avg16_syn_bbr/path.pd.nii.gz cc.bodyt_avg16_syn_bbr/path.pd.nii.gz cc.genu_avg16_syn_bbr/path.pd.nii.gz cc.rostrum_avg16_syn_bbr/path.pd.nii.gz cc.splenium_avg16_syn_bbr/path.pd.nii.gz lh.af_avg16_syn_bbr/path.pd.nii.gz lh.ar_avg16_syn_bbr/path.pd.nii.gz lh.atr_avg16_syn_bbr/path.pd.nii.gz lh.cbd_avg16_syn_bbr/path.pd.nii.gz lh.cbv_avg16_syn_bbr/path.pd.nii.gz lh.cst_avg16_syn_bbr/path.pd.nii.gz lh.emc_avg16_syn_bbr/path.pd.nii.gz lh.fat_avg16_syn_bbr/path.pd.nii.gz lh.fx_avg16_syn_bbr/path.pd.nii.gz lh.ilf_avg16_syn_bbr/path.pd.nii.gz lh.mlf_avg16_syn_bbr/path.pd.nii.gz lh.or_avg16_syn_bbr/path.pd.nii.gz lh.slf1_avg16_syn_bbr/path.pd.nii.gz lh.slf2_avg16_syn_bbr/path.pd.nii.gz lh.slf3_avg16_syn_bbr/path.pd.nii.gz lh.uf_avg16_syn_bbr/path.pd.nii.gz mcp_avg16_syn_bbr/path.pd.nii.gz rh.af_avg16_syn_bbr/path.pd.nii.gz rh.ar_avg16_syn_bbr/path.pd.nii.gz rh.atr_avg16_syn_bbr/path.pd.nii.gz rh.cbd_avg16_syn_bbr/path.pd.nii.gz rh.cbv_avg16_syn_bbr/path.pd.nii.gz rh.cst_avg16_syn_bbr/path.pd.nii.gz rh.emc_avg16_syn_bbr/path.pd.nii.gz rh.fat_avg16_syn_bbr/path.pd.nii.gz rh.fx_avg16_syn_bbr/path.pd.nii.gz rh.ilf_avg16_syn_bbr/path.pd.nii.gz rh.mlf_avg16_syn_bbr/path.pd.nii.gz rh.or_avg16_syn_bbr/path.pd.nii.gz rh.slf1_avg16_syn_bbr/path.pd.nii.gz rh.slf2_avg16_syn_bbr/path.pd.nii.gz rh.slf3_avg16_syn_bbr/path.pd.nii.gz rh.uf_avg16_syn_bbr/path.pd.nii.gz --out /autofs/space/nyx_002/users/edann/test_tutorial//trc/sub-BANDA001/dpath/merged_avg16_syn_bbr.mgz --ctab /usr/local/freesurfer/7.3.2//FreeSurferColorLUT.txt --thresh .2 sysname Linux hostname atalanta.nmr.mgh.harvard.edu machine x86_64 user erd37 Input directory: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath Input files: acomm_avg16_syn_bbr/path.pd.nii.gz cc.bodyc_avg16_syn_bbr/path.pd.nii.gz cc.bodyp_avg16_syn_bbr/path.pd.nii.gz cc.bodypf_avg16_syn_bbr/path.pd.nii.gz cc.bodypm_avg16_syn_bbr/path.pd.nii.gz cc.bodyt_avg16_syn_bbr/path.pd.nii.gz cc.genu_avg16_syn_bbr/path.pd.nii.gz cc.rostrum_avg16_syn_bbr/path.pd.nii.gz cc.splenium_avg16_syn_bbr/path.pd.nii.gz lh.af_avg16_syn_bbr/path.pd.nii.gz lh.ar_avg16_syn_bbr/path.pd.nii.gz lh.atr_avg16_syn_bbr/path.pd.nii.gz lh.cbd_avg16_syn_bbr/path.pd.nii.gz lh.cbv_avg16_syn_bbr/path.pd.nii.gz lh.cst_avg16_syn_bbr/path.pd.nii.gz lh.emc_avg16_syn_bbr/path.pd.nii.gz lh.fat_avg16_syn_bbr/path.pd.nii.gz lh.fx_avg16_syn_bbr/path.pd.nii.gz lh.ilf_avg16_syn_bbr/path.pd.nii.gz lh.mlf_avg16_syn_bbr/path.pd.nii.gz lh.or_avg16_syn_bbr/path.pd.nii.gz lh.slf1_avg16_syn_bbr/path.pd.nii.gz lh.slf2_avg16_syn_bbr/path.pd.nii.gz lh.slf3_avg16_syn_bbr/path.pd.nii.gz lh.uf_avg16_syn_bbr/path.pd.nii.gz mcp_avg16_syn_bbr/path.pd.nii.gz rh.af_avg16_syn_bbr/path.pd.nii.gz rh.ar_avg16_syn_bbr/path.pd.nii.gz rh.atr_avg16_syn_bbr/path.pd.nii.gz rh.cbd_avg16_syn_bbr/path.pd.nii.gz rh.cbv_avg16_syn_bbr/path.pd.nii.gz rh.cst_avg16_syn_bbr/path.pd.nii.gz rh.emc_avg16_syn_bbr/path.pd.nii.gz rh.fat_avg16_syn_bbr/path.pd.nii.gz rh.fx_avg16_syn_bbr/path.pd.nii.gz rh.ilf_avg16_syn_bbr/path.pd.nii.gz rh.mlf_avg16_syn_bbr/path.pd.nii.gz rh.or_avg16_syn_bbr/path.pd.nii.gz rh.slf1_avg16_syn_bbr/path.pd.nii.gz rh.slf2_avg16_syn_bbr/path.pd.nii.gz rh.slf3_avg16_syn_bbr/path.pd.nii.gz rh.uf_avg16_syn_bbr/path.pd.nii.gz Output file: /autofs/space/nyx_002/users/edann/test_tutorial/trc/sub-BANDA001/dpath/merged_avg16_syn_bbr.mgz Color table file: /autofs/vast/freesurfer/centos7_x86_64/7.3.2/FreeSurferColorLUT.txt Lower threshold for display: 0.200000 Merging volume 1 of 42... Threshold: 26.2 Name: Anterior Commissure Merging volume 2 of 42... Threshold: 11.2 Name: Corpus Callosum - Body - Central Merging volume 3 of 42... Threshold: 17.2 Name: Corpus Callosum - Body - Parietal Merging volume 4 of 42... Threshold: 14.6 Name: Corpus Callosum - Body - Prefrontal Merging volume 5 of 42... Threshold: 10.2 Name: Corpus Callosum - Body - Premotor Merging volume 6 of 42... Threshold: 8.4 Name: Corpus Callosum - Body - Temporal Merging volume 7 of 42... Threshold: 12.8 Name: Corpus Callosum - Genu Merging volume 8 of 42... Threshold: 13.2 Name: Corpus Callosum - Rostrum Merging volume 9 of 42... Threshold: 14.6 Name: Corpus Callosum - Splenium Merging volume 10 of 42... Threshold: 12.4 Name: Left Arcuate Fasciculus Merging volume 11 of 42... Threshold: 26.8 Name: Left Acoustic Radiation Merging volume 12 of 42... Threshold: 28.6 Name: Left Anterior Thalamic Radiation Merging volume 13 of 42... Threshold: 52.6 Name: Left Cingulum Bundle - Dorsal Merging volume 14 of 42... Threshold: 50.8 Name: Left Cingulum Bundle - Ventral Merging volume 15 of 42... Threshold: 15.2 Name: Left Corticospinal Tract Merging volume 16 of 42... Threshold: 22 Name: Left Extreme Capsule Merging volume 17 of 42... Threshold: 20.8 Name: Left Frontal Aslant Tract Merging volume 18 of 42... Threshold: 27 Name: Left Fornix Merging volume 19 of 42... Threshold: 16.2 Name: Left Inferior Longitudinal Fasciculus Merging volume 20 of 42... Threshold: 16 Name: Left Middle Longitudinal Fasciculus Merging volume 21 of 42... Threshold: 22.2 Name: Left Optic Radiation Merging volume 22 of 42... Threshold: 16.6 Name: Left Superior Longitudinal Fasciculus - I Merging volume 23 of 42... Threshold: 15 Name: Left Superior Longitudinal Fasciculus - II Merging volume 24 of 42... Threshold: 17.2 Name: Left Superior Longitudinal Fasciculus - III Merging volume 25 of 42... Threshold: 21.8 Name: Left Uncinate Fasciculus Merging volume 26 of 42... Threshold: 9.6 Name: Middle Cerebellar Peduncle Merging volume 27 of 42... Threshold: 13.6 Name: Right Arcuate Fasciculus Merging volume 28 of 42... Threshold: 31.6 Name: Right Acoustic Radiation Merging volume 29 of 42... Threshold: 32.8 Name: Right Anterior Thalamic Radiation Merging volume 30 of 42... Threshold: 47 Name: Right Cingulum Bundle - Dorsal Merging volume 31 of 42... Threshold: 23 Name: Right Cingulum Bundle - Ventral Merging volume 32 of 42... Threshold: 18 Name: Right Corticospinal Tract Merging volume 33 of 42... Threshold: 29.2 Name: Right Extreme Capsule Merging volume 34 of 42... Threshold: 10 Name: Right Frontal Aslant Tract Merging volume 35 of 42... Threshold: 27.2 Name: Right Fornix Merging volume 36 of 42... Threshold: 11.8 Name: Right Inferior Longitudinal Fasciculus Merging volume 37 of 42... Threshold: 21.2 Name: Right Middle Longitudinal Fasciculus Merging volume 38 of 42... Threshold: 22.6 Name: Right Optic Radiation Merging volume 39 of 42... Threshold: 19.8 Name: Right Superior Longitudinal Fasciculus - I Merging volume 40 of 42... Threshold: 16.8 Name: Right Superior Longitudinal Fasciculus - II Merging volume 41 of 42... Threshold: 25.6 Name: Right Superior Longitudinal Fasciculus - III Merging volume 42 of 42... Threshold: 27 Name: Right Uncinate Fasciculus Done in 6.215 sec. dmri_mergepaths done #------------------------------------- trac-paths finished without error at Fri Jul 14 20:11:08 EDT 2023